RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 KRTAP9-6A8MVA2 160 aa5.72□□□□□ -1.49
SHMT2-232ENST00000557487 KRTAP6-3Q3LI67 103 aa5.72□□□□□ -1.49
SHMT2-232ENST00000557487 KRTAP19-7Q3SYF9 63 aa5.71□□□□□ -1.5
SHMT2-232ENST00000557487 KRTAP4-8A0A0G2JLE6 195 aa5.7□□□□□ -1.5
SHMT2-232ENST00000557487 KRTAP4-8Q9BYQ9 185 aa5.7□□□□□ -1.5
SHMT2-232ENST00000557487 SYNE2Q8WXH0 6885 aaKnown RBP5.7□□□□□ -1.5
SHMT2-232ENST00000557487 MT1LQ93083 61 aa5.58□□□□□ -1.52
SHMT2-232ENST00000557487 MT1EP04732 61 aa5.56□□□□□ -1.52
SHMT2-232ENST00000557487 KRTAP5-9P26371 169 aa5.56□□□□□ -1.52
SHMT2-232ENST00000557487 KRTAP4-7Q9BYR0 210 aa5.51□□□□□ -1.53
SHMT2-232ENST00000557487 KMT2DO14686 5537 aa5.44□□□□□ -1.54
SHMT2-232ENST00000557487 NEBP20929 6669 aa5.37□□□□□ -1.55
SHMT2-232ENST00000557487 SPRR2FQ96RM1 72 aa5.37□□□□□ -1.55
SHMT2-232ENST00000557487 MUC12Q9UKN1 5478 aa5.37□□□□□ -1.55
SHMT2-232ENST00000557487 SPRR2EP22531 72 aa5.25□□□□□ -1.57
SHMT2-232ENST00000557487 SPRR2BP35325 72 aa5.25□□□□□ -1.57
SHMT2-232ENST00000557487 SPRR2AP35326 72 aa5.25□□□□□ -1.57
SHMT2-232ENST00000557487 MDN1Q9NU22 5596 aa5.24□□□□□ -1.57
SHMT2-232ENST00000557487 LCE1AQ5T7P2 110 aa5.24□□□□□ -1.57
SHMT2-232ENST00000557487 MT1GP13640 62 aa5.21□□□□□ -1.57
SHMT2-232ENST00000557487 KRTAP19-3Q7Z4W3 81 aa5.18□□□□□ -1.58
SHMT2-232ENST00000557487 KRTAP20-1Q3LI63 56 aa5.17□□□□□ -1.58
SHMT2-232ENST00000557487 MT1MQ8N339 61 aa5.17□□□□□ -1.58
SHMT2-232ENST00000557487 LOC100996750A0A140TA64 210 aa5.13□□□□□ -1.59
SHMT2-232ENST00000557487 KRTAP4-3Q9BYR4 195 aa5.11□□□□□ -1.59
SHMT2-232ENST00000557487 SPRR2DP22532 72 aa5.07□□□□□ -1.6
SHMT2-232ENST00000557487 KRTAP12-4P60329 112 aa5.03□□□□□ -1.6
SHMT2-232ENST00000557487 LCE5AQ5TCM9 118 aa5□□□□□ -1.61
SHMT2-232ENST00000557487 KRTAP2-2Q9BYT5 123 aa4.97□□□□□ -1.61
SHMT2-232ENST00000557487 LCE3BQ5TA77 95 aa4.93□□□□□ -1.62
SHMT2-232ENST00000557487 MT1AP04731 61 aa4.89□□□□□ -1.63
SHMT2-232ENST00000557487 DSTQ03001 7570 aaKnown RBP4.71□□□□□ -1.66
SHMT2-232ENST00000557487 KRTAP6-1Q3LI64 71 aa4.68□□□□□ -1.66
SHMT2-232ENST00000557487 LCE3DQ9BYE3 92 aa4.68□□□□□ -1.66
SHMT2-232ENST00000557487 LCE3EQ5T5B0 92 aa4.66□□□□□ -1.66
SHMT2-232ENST00000557487 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
SHMT2-232ENST00000557487 KRTAP5-5Q701N2 237 aaPredicted RBP4.58□□□□□ -1.68
SHMT2-232ENST00000557487 LCE4AQ5TA78 99 aa4.54□□□□□ -1.68
SHMT2-232ENST00000557487 SYNE1Q8NF91 8797 aaKnown RBP4.53□□□□□ -1.68
SHMT2-232ENST00000557487 KRTAP5-4Q6L8H1 288 aa4.51□□□□□ -1.69
SHMT2-232ENST00000557487 PRM1P04553 51 aa4.46□□□□□ -1.7
SHMT2-232ENST00000557487 LCE1DQ5T752 114 aa4.46□□□□□ -1.7
SHMT2-232ENST00000557487 KRTAP9-4Q9BYQ2 154 aa4.43□□□□□ -1.7
SHMT2-232ENST00000557487 MT4P47944 62 aa4.4□□□□□ -1.7
SHMT2-232ENST00000557487 KRTAP4-6Q9BYQ5 205 aa4.33□□□□□ -1.72
SHMT2-232ENST00000557487 HMCN1Q96RW7 5635 aa4.3□□□□□ -1.72
SHMT2-232ENST00000557487 KRTAP6-2Q3LI66 62 aa4.29□□□□□ -1.72
SHMT2-232ENST00000557487 MT3P25713 68 aa4.26□□□□□ -1.73
SHMT2-232ENST00000557487 KRTAP20-2Q3LI61 65 aa4.21□□□□□ -1.74
SHMT2-232ENST00000557487 GPR98Q8WXG9 6306 aa4.13□□□□□ -1.75
SHMT2-232ENST00000557487 KRTAP5-3Q6L8H2 238 aa4.1□□□□□ -1.75
SHMT2-232ENST00000557487 AHNAK2Q8IVF2 5795 aa4.07□□□□□ -1.76
SHMT2-232ENST00000557487 KRTAP5-10Q6L8G5 202 aa4.05□□□□□ -1.76
SHMT2-232ENST00000557487 KRTAP4-12Q9BQ66 201 aa3.99□□□□□ -1.77
SHMT2-232ENST00000557487 KRTAP5-2Q701N4 177 aa3.99□□□□□ -1.77
SHMT2-232ENST00000557487 KRTAP9-9Q9BYP9 154 aa3.89□□□□□ -1.79
SHMT2-232ENST00000557487 KRTAP5-7Q6L8G8 165 aa3.89□□□□□ -1.79
SHMT2-232ENST00000557487 OBSCNQ5VST9 7968 aa3.84□□□□□ -1.79
SHMT2-232ENST00000557487 KRTAP4-11Q9BYQ6 195 aa3.8□□□□□ -1.8
SHMT2-232ENST00000557487 KRTAP5-8O75690 187 aa3.68□□□□□ -1.82
SHMT2-232ENST00000557487 KRTAP5-1Q6L8H4 278 aa3.52□□□□□ -1.85
SHMT2-232ENST00000557487 LCE1EQ5T753 118 aa3.48□□□□□ -1.85
SHMT2-232ENST00000557487 MUC5ACP98088 5654 aa3.44□□□□□ -1.86
SHMT2-232ENST00000557487 MUC5BQ9HC84 5762 aaPredicted RBP3.32□□□□□ -1.88
SHMT2-232ENST00000557487 AHNAKQ09666 5890 aaKnown RBP3.28□□□□□ -1.88
SHMT2-232ENST00000557487 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.88
SHMT2-232ENST00000557487 LCE1CQ5T751 118 aa3.27□□□□□ -1.89
SHMT2-232ENST00000557487 KRTAP4-2Q9BYR5 136 aa3.24□□□□□ -1.89
SHMT2-232ENST00000557487 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.13□□□□□ -1.91
SHMT2-232ENST00000557487 KRTAP21-2Q3LI59 83 aa3.05□□□□□ -1.92
SHMT2-232ENST00000557487 LCE1FQ5T754 118 aa2.94□□□□□ -1.94
SHMT2-232ENST00000557487 KRTAP21-1Q3LI58 79 aa2.89□□□□□ -1.95
SHMT2-232ENST00000557487 KRTAP5-11Q6L8G4 156 aa2.89□□□□□ -1.95
SHMT2-232ENST00000557487 KRTAP4-4Q9BYR3 166 aa2.64□□□□□ -1.99
SHMT2-232ENST00000557487 PHGR1C9JFL3 82 aa2.48□□□□□ -2.01
SHMT2-232ENST00000557487 MUC19Q7Z5P9 8384 aa2.44□□□□□ -2.02
SHMT2-232ENST00000557487 MUC16Q8WXI7 14507 aa1.66□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 18.5 ms