RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 KRTAP19-6Q3LI70 58 aa2.55□□□□□ -2
SYNE3-205ENST00000557275 LPAP08519 4548 aa2.52□□□□□ -2.01
SYNE3-205ENST00000557275 LCE1AQ5T7P2 110 aa2.52□□□□□ -2.01
SYNE3-205ENST00000557275 EPPK1P58107 5090 aaKnown RBP2.51□□□□□ -2.01
SYNE3-205ENST00000557275 LCE4AQ5TA78 99 aa2.5□□□□□ -2.01
SYNE3-205ENST00000557275 KRTAP2-3P0C7H8 128 aa2.5□□□□□ -2.01
SYNE3-205ENST00000557275 KRTAP2-4Q9BYR9 128 aa2.5□□□□□ -2.01
SYNE3-205ENST00000557275 KRTAP2-1Q9BYU5 128 aa2.5□□□□□ -2.01
SYNE3-205ENST00000557275 KIAA1109Q2LD37 5005 aa2.49□□□□□ -2.01
SYNE3-205ENST00000557275 RNF213Q63HN8 5207 aa2.48□□□□□ -2.01
SYNE3-205ENST00000557275 KRTAP9-6A0A140TA67 174 aa2.48□□□□□ -2.01
SYNE3-205ENST00000557275 UBR4Q5T4S7 5183 aa2.47□□□□□ -2.01
SYNE3-205ENST00000557275 MUC12Q9UKN1 5478 aa2.47□□□□□ -2.01
SYNE3-205ENST00000557275 ABCA13Q86UQ4 5058 aa2.46□□□□□ -2.01
SYNE3-205ENST00000557275 SYNE2Q8WXH0 6885 aaKnown RBP2.45□□□□□ -2.02
SYNE3-205ENST00000557275 KRTAP17-1Q9BYP8 105 aa2.45□□□□□ -2.02
SYNE3-205ENST00000557275 LCE5AQ5TCM9 118 aa2.45□□□□□ -2.02
SYNE3-205ENST00000557275 KRTAP4-7Q9BYR0 210 aa2.39□□□□□ -2.03
SYNE3-205ENST00000557275 KRTAP9-7A8MTY7 169 aa2.38□□□□□ -2.03
SYNE3-205ENST00000557275 KRTAP6-2Q3LI66 62 aa2.36□□□□□ -2.03
SYNE3-205ENST00000557275 FSIP2Q5CZC0 6907 aa2.35□□□□□ -2.03
SYNE3-205ENST00000557275 KRTAP6-3Q3LI67 103 aa2.35□□□□□ -2.03
SYNE3-205ENST00000557275 KRTAP9-9Q9BYP9 154 aa2.34□□□□□ -2.03
SYNE3-205ENST00000557275 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
SYNE3-205ENST00000557275 LCE1EQ5T753 118 aa2.33□□□□□ -2.04
SYNE3-205ENST00000557275 LCE1FQ5T754 118 aa2.33□□□□□ -2.04
SYNE3-205ENST00000557275 LOC100996750A0A140TA64 210 aa2.31□□□□□ -2.04
SYNE3-205ENST00000557275 KRTAP2-2Q9BYT5 123 aa2.3□□□□□ -2.04
SYNE3-205ENST00000557275 DSTQ03001 7570 aaKnown RBP2.26□□□□□ -2.05
SYNE3-205ENST00000557275 KRTAP9-4Q9BYQ2 154 aa2.25□□□□□ -2.05
SYNE3-205ENST00000557275 KRTAP19-7Q3SYF9 63 aa2.25□□□□□ -2.05
SYNE3-205ENST00000557275 FAT4Q6V0I7 4981 aa2.24□□□□□ -2.05
SYNE3-205ENST00000557275 KRTAP19-2Q3LHN2 52 aa2.23□□□□□ -2.05
SYNE3-205ENST00000557275 LCE2AQ5TA79 106 aaPredicted RBP2.23□□□□□ -2.05
SYNE3-205ENST00000557275 GPR98Q8WXG9 6306 aa2.21□□□□□ -2.05
SYNE3-205ENST00000557275 SYNE1Q8NF91 8797 aaKnown RBP2.19□□□□□ -2.06
SYNE3-205ENST00000557275 KRTAP4-3Q9BYR4 195 aa2.19□□□□□ -2.06
SYNE3-205ENST00000557275 KRTAP4-9Q9BYQ8 210 aa2.18□□□□□ -2.06
SYNE3-205ENST00000557275 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.18□□□□□ -2.06
SYNE3-205ENST00000557275 OBSCNQ5VST9 7968 aa2.17□□□□□ -2.06
SYNE3-205ENST00000557275 KRTAP6-1Q3LI64 71 aa2.15□□□□□ -2.06
SYNE3-205ENST00000557275 KRTAP9-6A8MVA2 160 aa2.12□□□□□ -2.07
SYNE3-205ENST00000557275 MDN1Q9NU22 5596 aa2.1□□□□□ -2.07
SYNE3-205ENST00000557275 USH2AO75445 5202 aa2.07□□□□□ -2.08
SYNE3-205ENST00000557275 KMT2DO14686 5537 aa2.06□□□□□ -2.08
SYNE3-205ENST00000557275 MACF1Q9UPN3 7388 aaKnown RBP2.05□□□□□ -2.08
SYNE3-205ENST00000557275 MUC2Q02817 5179 aa2.05□□□□□ -2.08
SYNE3-205ENST00000557275 NEBP20929 6669 aa2.01□□□□□ -2.09
SYNE3-205ENST00000557275 KRTAP4-11Q9BYQ6 195 aa1.89□□□□□ -2.11
SYNE3-205ENST00000557275 FCGBPQ9Y6R7 5405 aaPredicted RBP1.88□□□□□ -2.11
SYNE3-205ENST00000557275 KRTAP5-9P26371 169 aa1.86□□□□□ -2.11
SYNE3-205ENST00000557275 SSPOA2VEC9 5147 aa1.83□□□□□ -2.12
SYNE3-205ENST00000557275 KRTAP20-2Q3LI61 65 aa1.79□□□□□ -2.12
SYNE3-205ENST00000557275 KRTAP5-4Q6L8H1 288 aa1.78□□□□□ -2.12
SYNE3-205ENST00000557275 MUC5BQ9HC84 5762 aaPredicted RBP1.77□□□□□ -2.13
SYNE3-205ENST00000557275 KRTAP4-6Q9BYQ5 205 aa1.74□□□□□ -2.13
SYNE3-205ENST00000557275 AHNAK2Q8IVF2 5795 aa1.74□□□□□ -2.13
SYNE3-205ENST00000557275 KRTAP5-5Q701N2 237 aaPredicted RBP1.68□□□□□ -2.14
SYNE3-205ENST00000557275 MUC5ACP98088 5654 aa1.67□□□□□ -2.14
SYNE3-205ENST00000557275 HMCN1Q96RW7 5635 aa1.64□□□□□ -2.15
SYNE3-205ENST00000557275 KRTAP4-4Q9BYR3 166 aa1.58□□□□□ -2.16
SYNE3-205ENST00000557275 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
SYNE3-205ENST00000557275 KRTAP4-12Q9BQ66 201 aa1.57□□□□□ -2.16
SYNE3-205ENST00000557275 KRTAP4-2Q9BYR5 136 aa1.57□□□□□ -2.16
SYNE3-205ENST00000557275 KRTAP5-3Q6L8H2 238 aa1.56□□□□□ -2.16
SYNE3-205ENST00000557275 AHNAKQ09666 5890 aaKnown RBP1.47□□□□□ -2.17
SYNE3-205ENST00000557275 PHGR1C9JFL3 82 aa1.4□□□□□ -2.18
SYNE3-205ENST00000557275 KRTAP5-10Q6L8G5 202 aa1.31□□□□□ -2.2
SYNE3-205ENST00000557275 KRTAP5-8O75690 187 aa1.29□□□□□ -2.2
SYNE3-205ENST00000557275 KRTAP5-11Q6L8G4 156 aa1.27□□□□□ -2.21
SYNE3-205ENST00000557275 KRTAP5-2Q701N4 177 aa1.19□□□□□ -2.22
SYNE3-205ENST00000557275 KRTAP21-1Q3LI58 79 aa1.18□□□□□ -2.22
SYNE3-205ENST00000557275 MUC16Q8WXI7 14507 aa1.15□□□□□ -2.22
SYNE3-205ENST00000557275 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.14□□□□□ -2.23
SYNE3-205ENST00000557275 KRTAP21-2Q3LI59 83 aa1.1□□□□□ -2.23
SYNE3-205ENST00000557275 KRTAP5-1Q6L8H4 278 aa1.07□□□□□ -2.24
SYNE3-205ENST00000557275 KRTAP5-7Q6L8G8 165 aa1.02□□□□□ -2.25
Retrieved 77 of 20,778 RNA–protein pairs in 110 ms