RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PMAIP1Q13794 54 aa7.55□□□□□ -1.2
VTI1B-205ENST00000555543 KRTAP19-5Q3LI72 72 aa7.54□□□□□ -1.2
VTI1B-205ENST00000555543 KRTAP19-3Q7Z4W3 81 aa7.54□□□□□ -1.2
VTI1B-205ENST00000555543 C10orf95Q9H7T3 257 aa7.52□□□□□ -1.21
VTI1B-205ENST00000555543 DSTQ03001 7570 aaKnown RBP7.49□□□□□ -1.21
VTI1B-205ENST00000555543 ROMO1P60602 79 aa7.43□□□□□ -1.22
VTI1B-205ENST00000555543 LCE3AQ5TA76 89 aa7.42□□□□□ -1.22
VTI1B-205ENST00000555543 TNP1P09430 55 aa7.41□□□□□ -1.22
VTI1B-205ENST00000555543 MT1GP13640 62 aa7.35□□□□□ -1.23
VTI1B-205ENST00000555543 MT1LQ93083 61 aa7.32□□□□□ -1.24
VTI1B-205ENST00000555543 MT1MQ8N339 61 aa7.27□□□□□ -1.25
VTI1B-205ENST00000555543 PP632Q6XCG6 107 aa7.26□□□□□ -1.25
VTI1B-205ENST00000555543 KRTAP25-1Q3LHN0 102 aa7.22□□□□□ -1.25
VTI1B-205ENST00000555543 KTN1-AS1Q86SY8 53 aa7.2□□□□□ -1.26
VTI1B-205ENST00000555543 KRTAP4-9Q9BYQ8 210 aa7.13□□□□□ -1.27
VTI1B-205ENST00000555543 KRTAP4-3Q9BYR4 195 aa7.13□□□□□ -1.27
VTI1B-205ENST00000555543 KRTAP12-3P60328 96 aa7.1□□□□□ -1.27
VTI1B-205ENST00000555543 PRAC1Q96KF2 57 aa7.08□□□□□ -1.28
VTI1B-205ENST00000555543 GPR98Q8WXG9 6306 aa7.05□□□□□ -1.28
VTI1B-205ENST00000555543 KRTAP23-1A1A580 65 aa7□□□□□ -1.29
VTI1B-205ENST00000555543 KRTAP4-7Q9BYR0 210 aa7□□□□□ -1.29
VTI1B-205ENST00000555543 LCE1DQ5T752 114 aa6.98□□□□□ -1.29
VTI1B-205ENST00000555543 HMCN1Q96RW7 5635 aa6.97□□□□□ -1.29
VTI1B-205ENST00000555543 LCE4AQ5TA78 99 aa6.95□□□□□ -1.3
VTI1B-205ENST00000555543 MT4P47944 62 aa6.9□□□□□ -1.3
VTI1B-205ENST00000555543 KRTAP5-4Q6L8H1 288 aa6.88□□□□□ -1.31
VTI1B-205ENST00000555543 SVIPQ8NHG7 77 aa6.77□□□□□ -1.33
VTI1B-205ENST00000555543 KRTAP4-6Q9BYQ5 205 aa6.73□□□□□ -1.33
VTI1B-205ENST00000555543 AHNAK2Q8IVF2 5795 aa6.69□□□□□ -1.34
VTI1B-205ENST00000555543 KRTAP5-5Q701N2 237 aaPredicted RBP6.67□□□□□ -1.34
VTI1B-205ENST00000555543 KRTAP15-1Q3LI76 137 aa6.66□□□□□ -1.34
VTI1B-205ENST00000555543 LOC100996750A0A140TA64 210 aa6.62□□□□□ -1.35
VTI1B-205ENST00000555543 KRTAP19-4Q3LI73 84 aa6.62□□□□□ -1.35
VTI1B-205ENST00000555543 KRTAP5-10Q6L8G5 202 aa6.56□□□□□ -1.36
VTI1B-205ENST00000555543 LCE3CQ5T5A8 94 aa6.55□□□□□ -1.36
VTI1B-205ENST00000555543 KRTAP20-2Q3LI61 65 aa6.49□□□□□ -1.37
VTI1B-205ENST00000555543 SYNE1Q8NF91 8797 aaKnown RBP6.46□□□□□ -1.38
VTI1B-205ENST00000555543 SPRR5A0A1B0GTR4 108 aa6.43□□□□□ -1.38
VTI1B-205ENST00000555543 KRTAP12-4P60329 112 aa6.41□□□□□ -1.38
VTI1B-205ENST00000555543 KRTAP5-7Q6L8G8 165 aa6.34□□□□□ -1.39
VTI1B-205ENST00000555543 KRTAP5-3Q6L8H2 238 aa6.33□□□□□ -1.4
VTI1B-205ENST00000555543 KRTAP9-6A8MVA2 160 aa6.24□□□□□ -1.41
VTI1B-205ENST00000555543 MT1AP04731 61 aa6.22□□□□□ -1.41
VTI1B-205ENST00000555543 KRTAP6-1Q3LI64 71 aa6.2□□□□□ -1.42
VTI1B-205ENST00000555543 KRTAP5-2Q701N4 177 aa6.05□□□□□ -1.44
VTI1B-205ENST00000555543 KRTAP9-4Q9BYQ2 154 aa5.99□□□□□ -1.45
VTI1B-205ENST00000555543 KRTAP6-2Q3LI66 62 aa5.9□□□□□ -1.46
VTI1B-205ENST00000555543 KRTAP4-11Q9BYQ6 195 aa5.89□□□□□ -1.47
VTI1B-205ENST00000555543 LUZP6Q538Z0 58 aa5.81□□□□□ -1.48
VTI1B-205ENST00000555543 OBSCNQ5VST9 7968 aa5.74□□□□□ -1.49
VTI1B-205ENST00000555543 KRTAP5-8O75690 187 aa5.71□□□□□ -1.5
VTI1B-205ENST00000555543 MT3P25713 68 aa5.66□□□□□ -1.5
VTI1B-205ENST00000555543 NDUFAF8A1L188 74 aa5.55□□□□□ -1.52
VTI1B-205ENST00000555543 MUC5ACP98088 5654 aa5.52□□□□□ -1.53
VTI1B-205ENST00000555543 MUC5BQ9HC84 5762 aaPredicted RBP5.52□□□□□ -1.53
VTI1B-205ENST00000555543 AHNAKQ09666 5890 aaKnown RBP5.49□□□□□ -1.53
VTI1B-205ENST00000555543 KRTAP5-1Q6L8H4 278 aa5.41□□□□□ -1.54
VTI1B-205ENST00000555543 KRTAP9-9Q9BYP9 154 aa5.35□□□□□ -1.55
VTI1B-205ENST00000555543 LCE1EQ5T753 118 aa5.17□□□□□ -1.58
VTI1B-205ENST00000555543 KRTAP4-2Q9BYR5 136 aa4.93□□□□□ -1.62
VTI1B-205ENST00000555543 LCE1BQ5T7P3 118 aa4.89□□□□□ -1.63
VTI1B-205ENST00000555543 A0A0A0MQY5 61 aa4.86□□□□□ -1.63
VTI1B-205ENST00000555543 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
VTI1B-205ENST00000555543 LCE3DQ9BYE3 92 aa4.72□□□□□ -1.65
VTI1B-205ENST00000555543 INE1O15225 51 aa4.62□□□□□ -1.67
VTI1B-205ENST00000555543 H3BS24 57 aa4.59□□□□□ -1.67
VTI1B-205ENST00000555543 LCE3EQ5T5B0 92 aa4.51□□□□□ -1.69
VTI1B-205ENST00000555543 KRTAP4-12Q9BQ66 201 aa4.43□□□□□ -1.7
VTI1B-205ENST00000555543 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.39□□□□□ -1.71
VTI1B-205ENST00000555543 KRTAP5-11Q6L8G4 156 aa4.36□□□□□ -1.71
VTI1B-205ENST00000555543 LCE1FQ5T754 118 aa4.18□□□□□ -1.74
VTI1B-205ENST00000555543 KRTAP21-2Q3LI59 83 aa4.08□□□□□ -1.76
VTI1B-205ENST00000555543 PRM1P04553 51 aa3.85□□□□□ -1.79
VTI1B-205ENST00000555543 PHGR1C9JFL3 82 aa3.81□□□□□ -1.8
VTI1B-205ENST00000555543 KRTAP4-4Q9BYR3 166 aa3.74□□□□□ -1.81
VTI1B-205ENST00000555543 MUC19Q7Z5P9 8384 aa3.53□□□□□ -1.84
VTI1B-205ENST00000555543 KRTAP21-1Q3LI58 79 aa2.89□□□□□ -1.95
VTI1B-205ENST00000555543 MUC16Q8WXI7 14507 aa2.51□□□□□ -2.01
Retrieved 78 of 20,778 RNA–protein pairs in 101.8 ms