RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 ETDBQ3ZM63 59 aa3.17□□□□□ -1.9
SCFD1-215ENST00000555259 C10orf95Q9H7T3 257 aa3.17□□□□□ -1.9
SCFD1-215ENST00000555259 SMIM6P0DI80 62 aa3.16□□□□□ -1.9
SCFD1-215ENST00000555259 H3BPC8 53 aa3.15□□□□□ -1.91
SCFD1-215ENST00000555259 ACYP2P14621 99 aa3.14□□□□□ -1.91
SCFD1-215ENST00000555259 KRTAP5-8O75690 187 aa3.12□□□□□ -1.91
SCFD1-215ENST00000555259 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
SCFD1-215ENST00000555259 F8W1H4 67 aa3.11□□□□□ -1.91
SCFD1-215ENST00000555259 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.92
SCFD1-215ENST00000555259 V9GYY9 64 aa3.08□□□□□ -1.92
SCFD1-215ENST00000555259 FAM240AA0A1B0GVK7 77 aa3.08□□□□□ -1.92
SCFD1-215ENST00000555259 CHKB-CPT1BH3BT56 60 aa3.08□□□□□ -1.92
SCFD1-215ENST00000555259 COL5A1-AS1Q5SY13 56 aa3.06□□□□□ -1.92
SCFD1-215ENST00000555259 SPINT4Q6UDR6 99 aa3.06□□□□□ -1.92
SCFD1-215ENST00000555259 GTF2H5Q6ZYL4 71 aa3.06□□□□□ -1.92
SCFD1-215ENST00000555259 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
SCFD1-215ENST00000555259 LINC00643Q86TS7 51 aa3.03□□□□□ -1.92
SCFD1-215ENST00000555259 KRTAP12-1P59990 96 aa3□□□□□ -1.93
SCFD1-215ENST00000555259 SCGB1A1P11684 91 aa3□□□□□ -1.93
SCFD1-215ENST00000555259 KRTAP12-3P60328 96 aa3□□□□□ -1.93
SCFD1-215ENST00000555259 SPATA8Q6RVD6 105 aa2.99□□□□□ -1.93
SCFD1-215ENST00000555259 TNP1P09430 55 aa2.98□□□□□ -1.93
SCFD1-215ENST00000555259 PRAC1Q96KF2 57 aa2.92□□□□□ -1.94
SCFD1-215ENST00000555259 A0A1B0GV90 55 aa2.91□□□□□ -1.94
SCFD1-215ENST00000555259 SMIM20Q8N5G0 67 aa2.88□□□□□ -1.95
SCFD1-215ENST00000555259 PRO0628Q9UI54 55 aa2.88□□□□□ -1.95
SCFD1-215ENST00000555259 A0A1B0GU33 70 aa2.87□□□□□ -1.95
SCFD1-215ENST00000555259 KRTAP6-1Q3LI64 71 aa2.87□□□□□ -1.95
SCFD1-215ENST00000555259 SERP1Q9Y6X1 66 aa2.87□□□□□ -1.95
SCFD1-215ENST00000555259 MT1AP04731 61 aa2.86□□□□□ -1.95
SCFD1-215ENST00000555259 MT3P25713 68 aa2.86□□□□□ -1.95
SCFD1-215ENST00000555259 KRTAP6-2Q3LI66 62 aa2.83□□□□□ -1.96
SCFD1-215ENST00000555259 K7ERU9 68 aa2.82□□□□□ -1.96
SCFD1-215ENST00000555259 SPANXA2-OT1Q8N9U9 137 aa2.81□□□□□ -1.96
SCFD1-215ENST00000555259 A8MU10 97 aa2.79□□□□□ -1.96
SCFD1-215ENST00000555259 SMIM26A0A096LP01 95 aa2.78□□□□□ -1.96
SCFD1-215ENST00000555259 SNURFQ9Y675 71 aa2.78□□□□□ -1.96
SCFD1-215ENST00000555259 RPS28P62857 69 aaKnown RBP2.77□□□□□ -1.97
SCFD1-215ENST00000555259 PMAIP1Q13794 54 aa2.77□□□□□ -1.97
SCFD1-215ENST00000555259 COA5Q86WW8 74 aa2.76□□□□□ -1.97
SCFD1-215ENST00000555259 NDUFAF8A1L188 74 aa2.74□□□□□ -1.97
SCFD1-215ENST00000555259 KRTAP25-1Q3LHN0 102 aa2.71□□□□□ -1.98
SCFD1-215ENST00000555259 LCE3CQ5T5A8 94 aa2.71□□□□□ -1.98
SCFD1-215ENST00000555259 J3QR89 54 aa2.7□□□□□ -1.98
SCFD1-215ENST00000555259 PSPHP1O15172 72 aa2.67□□□□□ -1.98
SCFD1-215ENST00000555259 ANAPC13Q9BS18 74 aa2.67□□□□□ -1.98
SCFD1-215ENST00000555259 KRTAP9-6A8MVA2 160 aa2.66□□□□□ -1.98
SCFD1-215ENST00000555259 SERP2Q8N6R1 65 aa2.66□□□□□ -1.98
SCFD1-215ENST00000555259 A0A1B0GU69 56 aa2.62□□□□□ -1.99
SCFD1-215ENST00000555259 KTN1-AS1Q86SY8 53 aa2.57□□□□□ -2
SCFD1-215ENST00000555259 LCE1FQ5T754 118 aa2.55□□□□□ -2
SCFD1-215ENST00000555259 BRK1Q8WUW1 75 aa2.54□□□□□ -2
SCFD1-215ENST00000555259 TMEM258P61165 79 aa2.53□□□□□ -2
SCFD1-215ENST00000555259 CCDC179H3BU77 68 aa2.53□□□□□ -2.01
SCFD1-215ENST00000555259 PRR15LQ9BU68 103 aa2.46□□□□□ -2.02
SCFD1-215ENST00000555259 K7ERS5 55 aa2.45□□□□□ -2.02
SCFD1-215ENST00000555259 H7BZZ5 65 aa2.44□□□□□ -2.02
SCFD1-215ENST00000555259 LUZP6Q538Z0 58 aa2.41□□□□□ -2.02
SCFD1-215ENST00000555259 LCE1BQ5T7P3 118 aa2.41□□□□□ -2.02
SCFD1-215ENST00000555259 COX7CP15954 63 aa2.39□□□□□ -2.03
SCFD1-215ENST00000555259 A6NED7 52 aa2.38□□□□□ -2.03
SCFD1-215ENST00000555259 ATP5EP56381 51 aaPredicted RBP2.38□□□□□ -2.03
SCFD1-215ENST00000555259 LCE1CQ5T751 118 aa2.35□□□□□ -2.03
SCFD1-215ENST00000555259 UQCR11O14957 56 aa2.32□□□□□ -2.04
SCFD1-215ENST00000555259 LINC01558Q9Y6Z2 57 aa2.28□□□□□ -2.04
SCFD1-215ENST00000555259 Q1T7F1 81 aa2.27□□□□□ -2.05
SCFD1-215ENST00000555259 ROMO1P60602 79 aa2.25□□□□□ -2.05
SCFD1-215ENST00000555259 MIR22HGQ0VDD5 57 aa2.23□□□□□ -2.05
SCFD1-215ENST00000555259 PHGR1C9JFL3 82 aa2.22□□□□□ -2.05
SCFD1-215ENST00000555259 LCE3EQ5T5B0 92 aa2.2□□□□□ -2.06
SCFD1-215ENST00000555259 CDC42SE1Q9NRR8 79 aa2.19□□□□□ -2.06
SCFD1-215ENST00000555259 MUC19Q7Z5P9 8384 aa1.93□□□□□ -2.1
SCFD1-215ENST00000555259 KRTAP21-2Q3LI59 83 aa1.9□□□□□ -2.1
SCFD1-215ENST00000555259 INE1O15225 51 aa1.88□□□□□ -2.11
SCFD1-215ENST00000555259 LCE3DQ9BYE3 92 aa1.87□□□□□ -2.11
SCFD1-215ENST00000555259 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
SCFD1-215ENST00000555259 MUC16Q8WXI7 14507 aa1.28□□□□□ -2.2
SCFD1-215ENST00000555259 PRM1P04553 51 aa1.02□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 100.3 ms