RNA–Protein interactions for RNA: ENST00000555002.5

SYNE2-216, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 11,532 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-216ENST00000555002 KRTAP19-6Q3LI70 58 aa2.04□□□□□ -2.08
SYNE2-216ENST00000555002 TNXBP22105 4242 aa2.04□□□□□ -2.08
SYNE2-216ENST00000555002 KRTAP4-9Q9BYQ8 210 aa2.04□□□□□ -2.08
SYNE2-216ENST00000555002 LRP1BQ9NZR2 4599 aa2□□□□□ -2.09
SYNE2-216ENST00000555002 KRTAP9-6A0A140TA67 174 aa1.99□□□□□ -2.09
SYNE2-216ENST00000555002 HYDINQ4G0P3 5121 aa1.99□□□□□ -2.09
SYNE2-216ENST00000555002 KRTAP19-2Q3LHN2 52 aa1.95□□□□□ -2.1
SYNE2-216ENST00000555002 LCE2AQ5TA79 106 aaPredicted RBP1.95□□□□□ -2.1
SYNE2-216ENST00000555002 SYNE1Q8NF91 8797 aaKnown RBP1.93□□□□□ -2.1
SYNE2-216ENST00000555002 MT1AP04731 61 aa1.93□□□□□ -2.1
SYNE2-216ENST00000555002 RNF213Q63HN8 5207 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 KRTAP6-2Q3LI66 62 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 KRTAP2-3P0C7H8 128 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 KRTAP2-4Q9BYR9 128 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 KRTAP2-1Q9BYU5 128 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 HERC2O95714 4834 aa1.91□□□□□ -2.1
SYNE2-216ENST00000555002 HERC1Q15751 4861 aa1.9□□□□□ -2.11
SYNE2-216ENST00000555002 MUC17Q685J3 4493 aa1.88□□□□□ -2.11
SYNE2-216ENST00000555002 EPPK1P58107 5090 aaKnown RBP1.88□□□□□ -2.11
SYNE2-216ENST00000555002 KRTAP9-7A8MTY7 169 aa1.87□□□□□ -2.11
SYNE2-216ENST00000555002 LCE4AQ5TA78 99 aa1.87□□□□□ -2.11
SYNE2-216ENST00000555002 KMT2CQ8NEZ4 4911 aaKnown RBP1.87□□□□□ -2.11
SYNE2-216ENST00000555002 LRP2P98164 4655 aa1.87□□□□□ -2.11
SYNE2-216ENST00000555002 ABCA13Q86UQ4 5058 aa1.85□□□□□ -2.11
SYNE2-216ENST00000555002 KRTAP6-1Q3LI64 71 aa1.83□□□□□ -2.12
SYNE2-216ENST00000555002 KRTAP9-9Q9BYP9 154 aa1.8□□□□□ -2.12
SYNE2-216ENST00000555002 LPAP08519 4548 aa1.78□□□□□ -2.12
SYNE2-216ENST00000555002 KRTAP9-4Q9BYQ2 154 aa1.77□□□□□ -2.13
SYNE2-216ENST00000555002 UBR4Q5T4S7 5183 aa1.77□□□□□ -2.13
SYNE2-216ENST00000555002 KRTAP19-7Q3SYF9 63 aa1.75□□□□□ -2.13
SYNE2-216ENST00000555002 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.75□□□□□ -2.13
SYNE2-216ENST00000555002 KRTAP6-3Q3LI67 103 aa1.74□□□□□ -2.13
SYNE2-216ENST00000555002 KRTAP2-2Q9BYT5 123 aa1.74□□□□□ -2.13
SYNE2-216ENST00000555002 KRTAP20-2Q3LI61 65 aa1.69□□□□□ -2.14
SYNE2-216ENST00000555002 HMCN2Q8NDA2 5059 aa1.69□□□□□ -2.14
SYNE2-216ENST00000555002 SYNE2Q8WXH0 6885 aaKnown RBP1.68□□□□□ -2.14
SYNE2-216ENST00000555002 FAT4Q6V0I7 4981 aa1.67□□□□□ -2.14
SYNE2-216ENST00000555002 KRTAP4-11Q9BYQ6 195 aa1.65□□□□□ -2.15
SYNE2-216ENST00000555002 DSTQ03001 7570 aaKnown RBP1.64□□□□□ -2.15
SYNE2-216ENST00000555002 USH2AO75445 5202 aa1.63□□□□□ -2.15
SYNE2-216ENST00000555002 KRTAP9-6A8MVA2 160 aa1.63□□□□□ -2.15
SYNE2-216ENST00000555002 KRTAP4-4Q9BYR3 166 aa1.62□□□□□ -2.15
SYNE2-216ENST00000555002 MUC12Q9UKN1 5478 aa1.61□□□□□ -2.15
SYNE2-216ENST00000555002 MUC2Q02817 5179 aa1.61□□□□□ -2.15
SYNE2-216ENST00000555002 MACF1Q9UPN3 7388 aaKnown RBP1.59□□□□□ -2.15
SYNE2-216ENST00000555002 KRTAP4-12Q9BQ66 201 aa1.59□□□□□ -2.16
SYNE2-216ENST00000555002 KRTAP4-2Q9BYR5 136 aa1.59□□□□□ -2.16
SYNE2-216ENST00000555002 GPR98Q8WXG9 6306 aa1.58□□□□□ -2.16
SYNE2-216ENST00000555002 KRTAP4-6Q9BYQ5 205 aa1.55□□□□□ -2.16
SYNE2-216ENST00000555002 OBSCNQ5VST9 7968 aa1.51□□□□□ -2.17
SYNE2-216ENST00000555002 FSIP2Q5CZC0 6907 aa1.5□□□□□ -2.17
SYNE2-216ENST00000555002 NEBP20929 6669 aa1.5□□□□□ -2.17
SYNE2-216ENST00000555002 MUC19Q7Z5P9 8384 aa1.47□□□□□ -2.17
SYNE2-216ENST00000555002 FCGBPQ9Y6R7 5405 aaPredicted RBP1.44□□□□□ -2.18
SYNE2-216ENST00000555002 KMT2DO14686 5537 aa1.38□□□□□ -2.19
SYNE2-216ENST00000555002 MDN1Q9NU22 5596 aa1.38□□□□□ -2.19
SYNE2-216ENST00000555002 SSPOA2VEC9 5147 aa1.38□□□□□ -2.19
SYNE2-216ENST00000555002 KRTAP5-9P26371 169 aa1.34□□□□□ -2.19
SYNE2-216ENST00000555002 KRTAP5-4Q6L8H1 288 aa1.31□□□□□ -2.2
SYNE2-216ENST00000555002 KRTAP5-5Q701N2 237 aaPredicted RBP1.26□□□□□ -2.21
SYNE2-216ENST00000555002 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
SYNE2-216ENST00000555002 PHGR1C9JFL3 82 aa1.19□□□□□ -2.22
SYNE2-216ENST00000555002 AHNAK2Q8IVF2 5795 aa1.17□□□□□ -2.22
SYNE2-216ENST00000555002 HMCN1Q96RW7 5635 aa1.15□□□□□ -2.23
SYNE2-216ENST00000555002 MUC5ACP98088 5654 aa1.13□□□□□ -2.23
SYNE2-216ENST00000555002 KRTAP5-3Q6L8H2 238 aa1.11□□□□□ -2.23
SYNE2-216ENST00000555002 KRTAP5-8O75690 187 aa1.04□□□□□ -2.24
SYNE2-216ENST00000555002 KRTAP5-7Q6L8G8 165 aa1.02□□□□□ -2.25
SYNE2-216ENST00000555002 KRTAP5-2Q701N4 177 aa1.01□□□□□ -2.25
SYNE2-216ENST00000555002 KRTAP5-10Q6L8G5 202 aa0.96□□□□□ -2.26
SYNE2-216ENST00000555002 AHNAKQ09666 5890 aaKnown RBP0.93□□□□□ -2.26
SYNE2-216ENST00000555002 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.89□□□□□ -2.27
SYNE2-216ENST00000555002 KRTAP5-1Q6L8H4 278 aa0.88□□□□□ -2.27
SYNE2-216ENST00000555002 KRTAP21-1Q3LI58 79 aa0.85□□□□□ -2.27
SYNE2-216ENST00000555002 KRTAP21-2Q3LI59 83 aa0.84□□□□□ -2.28
SYNE2-216ENST00000555002 KRTAP5-11Q6L8G4 156 aa0.83□□□□□ -2.28
SYNE2-216ENST00000555002 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 77 of 20,778 RNA–protein pairs in 90.5 ms