RNA–Protein interactions for RNA: ENST00000552620.1

CHMP4A-210, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 716 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-210ENST00000552620 PRO2289Q9P1D8 64 aa2.53□□□□□ -2
CHMP4A-210ENST00000552620 PCLOQ9Y6V0 5065 aa2.51□□□□□ -2.01
CHMP4A-210ENST00000552620 SPRR5A0A1B0GTR4 108 aa2.49□□□□□ -2.01
CHMP4A-210ENST00000552620 M0R2T5 61 aa2.48□□□□□ -2.01
CHMP4A-210ENST00000552620 OBSCNQ5VST9 7968 aa2.48□□□□□ -2.01
CHMP4A-210ENST00000552620 MT1HP80294 61 aa2.47□□□□□ -2.01
CHMP4A-210ENST00000552620 KRTAP19-8Q3LI54 63 aa2.46□□□□□ -2.02
CHMP4A-210ENST00000552620 RNF213Q63HN8 5207 aa2.45□□□□□ -2.02
CHMP4A-210ENST00000552620 KRTAP10-10P60014 251 aa2.44□□□□□ -2.02
CHMP4A-210ENST00000552620 MT2AP02795 61 aa2.43□□□□□ -2.02
CHMP4A-210ENST00000552620 MUC2Q02817 5179 aa2.42□□□□□ -2.02
CHMP4A-210ENST00000552620 MT1FP04733 61 aa2.42□□□□□ -2.02
CHMP4A-210ENST00000552620 FAT4Q6V0I7 4981 aa2.41□□□□□ -2.02
CHMP4A-210ENST00000552620 LCE3AQ5TA76 89 aa2.4□□□□□ -2.03
CHMP4A-210ENST00000552620 KRTAP8-1Q8IUC2 63 aa2.4□□□□□ -2.03
CHMP4A-210ENST00000552620 MT1BP07438 61 aa2.37□□□□□ -2.03
CHMP4A-210ENST00000552620 UBR4Q5T4S7 5183 aa2.36□□□□□ -2.03
CHMP4A-210ENST00000552620 MT1XP80297 61 aa2.36□□□□□ -2.03
CHMP4A-210ENST00000552620 KRTAP4-3Q9BYR4 195 aa2.35□□□□□ -2.03
CHMP4A-210ENST00000552620 KRTAP12-3P60328 96 aa2.32□□□□□ -2.04
CHMP4A-210ENST00000552620 LCE3DQ9BYE3 92 aa2.32□□□□□ -2.04
CHMP4A-210ENST00000552620 INE1O15225 51 aa2.31□□□□□ -2.04
CHMP4A-210ENST00000552620 KRTAP5-2Q701N4 177 aa2.23□□□□□ -2.05
CHMP4A-210ENST00000552620 KRTAP19-5Q3LI72 72 aa2.2□□□□□ -2.06
CHMP4A-210ENST00000552620 KRTAP5-5Q701N2 237 aaPredicted RBP2.18□□□□□ -2.06
CHMP4A-210ENST00000552620 KRTAP19-7Q3SYF9 63 aa2.1□□□□□ -2.07
CHMP4A-210ENST00000552620 USH2AO75445 5202 aa2.09□□□□□ -2.08
CHMP4A-210ENST00000552620 KRTAP2-3P0C7H8 128 aa2.06□□□□□ -2.08
CHMP4A-210ENST00000552620 LCE1CQ5T751 118 aa2.06□□□□□ -2.08
CHMP4A-210ENST00000552620 LCE1BQ5T7P3 118 aa2.06□□□□□ -2.08
CHMP4A-210ENST00000552620 KRTAP2-4Q9BYR9 128 aa2.06□□□□□ -2.08
CHMP4A-210ENST00000552620 KRTAP2-1Q9BYU5 128 aa2.06□□□□□ -2.08
CHMP4A-210ENST00000552620 MT1LQ93083 61 aa2.05□□□□□ -2.08
CHMP4A-210ENST00000552620 MT1EP04732 61 aa2.04□□□□□ -2.08
CHMP4A-210ENST00000552620 SSPOA2VEC9 5147 aa2.02□□□□□ -2.09
CHMP4A-210ENST00000552620 KRTAP19-6Q3LI70 58 aa2.02□□□□□ -2.09
CHMP4A-210ENST00000552620 KMT2DO14686 5537 aa1.99□□□□□ -2.09
CHMP4A-210ENST00000552620 MT1GP13640 62 aa1.94□□□□□ -2.1
CHMP4A-210ENST00000552620 KRTAP6-3Q3LI67 103 aa1.94□□□□□ -2.1
CHMP4A-210ENST00000552620 KRTAP19-3Q7Z4W3 81 aa1.92□□□□□ -2.1
CHMP4A-210ENST00000552620 MT1MQ8N339 61 aa1.91□□□□□ -2.1
CHMP4A-210ENST00000552620 KRTAP5-8O75690 187 aa1.89□□□□□ -2.11
CHMP4A-210ENST00000552620 FSIP2Q5CZC0 6907 aa1.83□□□□□ -2.12
CHMP4A-210ENST00000552620 FCGBPQ9Y6R7 5405 aaPredicted RBP1.82□□□□□ -2.12
CHMP4A-210ENST00000552620 MUC12Q9UKN1 5478 aa1.81□□□□□ -2.12
CHMP4A-210ENST00000552620 MT1AP04731 61 aa1.8□□□□□ -2.12
CHMP4A-210ENST00000552620 KRTAP12-4P60329 112 aa1.8□□□□□ -2.12
CHMP4A-210ENST00000552620 SPRR2FQ96RM1 72 aa1.8□□□□□ -2.12
CHMP4A-210ENST00000552620 CRCT1Q9UGL9 99 aa1.78□□□□□ -2.12
CHMP4A-210ENST00000552620 MUC19Q7Z5P9 8384 aa1.75□□□□□ -2.13
CHMP4A-210ENST00000552620 KRTAP6-1Q3LI64 71 aa1.71□□□□□ -2.14
CHMP4A-210ENST00000552620 KRTAP5-7Q6L8G8 165 aa1.69□□□□□ -2.14
CHMP4A-210ENST00000552620 HMCN1Q96RW7 5635 aa1.66□□□□□ -2.14
CHMP4A-210ENST00000552620 SPRR2EP22531 72 aa1.64□□□□□ -2.15
CHMP4A-210ENST00000552620 SPRR2BP35325 72 aa1.64□□□□□ -2.15
CHMP4A-210ENST00000552620 SPRR2AP35326 72 aa1.64□□□□□ -2.15
CHMP4A-210ENST00000552620 MDN1Q9NU22 5596 aa1.61□□□□□ -2.15
CHMP4A-210ENST00000552620 MACF1Q9UPN3 7388 aaKnown RBP1.6□□□□□ -2.15
CHMP4A-210ENST00000552620 SPRR2DP22532 72 aa1.58□□□□□ -2.16
CHMP4A-210ENST00000552620 PRM1P04553 51 aa1.57□□□□□ -2.16
CHMP4A-210ENST00000552620 DSTQ03001 7570 aaKnown RBP1.57□□□□□ -2.16
CHMP4A-210ENST00000552620 SYNE2Q8WXH0 6885 aaKnown RBP1.57□□□□□ -2.16
CHMP4A-210ENST00000552620 SYNE1Q8NF91 8797 aaKnown RBP1.56□□□□□ -2.16
CHMP4A-210ENST00000552620 KRTAP6-2Q3LI66 62 aa1.53□□□□□ -2.16
CHMP4A-210ENST00000552620 NEBP20929 6669 aa1.52□□□□□ -2.17
CHMP4A-210ENST00000552620 GPR98Q8WXG9 6306 aa1.49□□□□□ -2.17
CHMP4A-210ENST00000552620 KRTAP21-2Q3LI59 83 aa1.47□□□□□ -2.17
CHMP4A-210ENST00000552620 KRTAP20-1Q3LI63 56 aa1.43□□□□□ -2.18
CHMP4A-210ENST00000552620 KRTAP20-2Q3LI61 65 aa1.38□□□□□ -2.19
CHMP4A-210ENST00000552620 MT4P47944 62 aa1.35□□□□□ -2.19
CHMP4A-210ENST00000552620 MUC5ACP98088 5654 aa1.29□□□□□ -2.2
CHMP4A-210ENST00000552620 AHNAK2Q8IVF2 5795 aa1.25□□□□□ -2.21
CHMP4A-210ENST00000552620 KRTAP5-10Q6L8G5 202 aa1.22□□□□□ -2.21
CHMP4A-210ENST00000552620 AHNAKQ09666 5890 aaKnown RBP1.14□□□□□ -2.23
CHMP4A-210ENST00000552620 MUC5BQ9HC84 5762 aaPredicted RBP1.1□□□□□ -2.23
CHMP4A-210ENST00000552620 KRTAP21-1Q3LI58 79 aa1.03□□□□□ -2.24
CHMP4A-210ENST00000552620 PHGR1C9JFL3 82 aa0.89□□□□□ -2.27
CHMP4A-210ENST00000552620 MUC16Q8WXI7 14507 aa0.78□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 173.9 ms