RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 MT1MQ8N339 61 aa5.12□□□□□ -1.59
COL2A1-209ENST00000546974 MT1LQ93083 61 aa5.11□□□□□ -1.59
COL2A1-209ENST00000546974 A8MU10 97 aa5.1□□□□□ -1.59
COL2A1-209ENST00000546974 UQCR11O14957 56 aa5.1□□□□□ -1.59
COL2A1-209ENST00000546974 LCE1DQ5T752 114 aa5.1□□□□□ -1.59
COL2A1-209ENST00000546974 HMCN1Q96RW7 5635 aa5.09□□□□□ -1.59
COL2A1-209ENST00000546974 LCE4AQ5TA78 99 aa5.09□□□□□ -1.59
COL2A1-209ENST00000546974 TNP1P09430 55 aa5.05□□□□□ -1.6
COL2A1-209ENST00000546974 LCE3AQ5TA76 89 aa5.05□□□□□ -1.6
COL2A1-209ENST00000546974 C10orf95Q9H7T3 257 aa5.05□□□□□ -1.6
COL2A1-209ENST00000546974 MT4P47944 62 aa5.02□□□□□ -1.61
COL2A1-209ENST00000546974 MIR22HGQ0VDD5 57 aa5.02□□□□□ -1.61
COL2A1-209ENST00000546974 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
COL2A1-209ENST00000546974 AHNAK2Q8IVF2 5795 aa4.97□□□□□ -1.61
COL2A1-209ENST00000546974 KRTAP5-4Q6L8H1 288 aa4.96□□□□□ -1.62
COL2A1-209ENST00000546974 A6NED7 52 aa4.93□□□□□ -1.62
COL2A1-209ENST00000546974 KRTAP4-6Q9BYQ5 205 aa4.87□□□□□ -1.63
COL2A1-209ENST00000546974 CDC42SE1Q9NRR8 79 aa4.87□□□□□ -1.63
COL2A1-209ENST00000546974 KRTAP12-3P60328 96 aa4.86□□□□□ -1.63
COL2A1-209ENST00000546974 KRTAP4-7Q9BYR0 210 aa4.83□□□□□ -1.64
COL2A1-209ENST00000546974 KRTAP5-10Q6L8G5 202 aa4.81□□□□□ -1.64
COL2A1-209ENST00000546974 K7ERS5 55 aa4.76□□□□□ -1.65
COL2A1-209ENST00000546974 KRTAP5-5Q701N2 237 aaPredicted RBP4.71□□□□□ -1.66
COL2A1-209ENST00000546974 KRTAP25-1Q3LHN0 102 aa4.7□□□□□ -1.66
COL2A1-209ENST00000546974 KRTAP20-2Q3LI61 65 aa4.69□□□□□ -1.66
COL2A1-209ENST00000546974 KRTAP5-3Q6L8H2 238 aa4.67□□□□□ -1.66
COL2A1-209ENST00000546974 SPRR5A0A1B0GTR4 108 aa4.66□□□□□ -1.66
COL2A1-209ENST00000546974 KRTAP5-7Q6L8G8 165 aa4.65□□□□□ -1.67
COL2A1-209ENST00000546974 BRK1Q8WUW1 75 aa4.64□□□□□ -1.67
COL2A1-209ENST00000546974 KRTAP12-4P60329 112 aa4.63□□□□□ -1.67
COL2A1-209ENST00000546974 KRTAP19-4Q3LI73 84 aa4.63□□□□□ -1.67
COL2A1-209ENST00000546974 SYNE1Q8NF91 8797 aaKnown RBP4.61□□□□□ -1.67
COL2A1-209ENST00000546974 ROMO1P60602 79 aa4.61□□□□□ -1.67
COL2A1-209ENST00000546974 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
COL2A1-209ENST00000546974 KRTAP23-1A1A580 65 aa4.55□□□□□ -1.68
COL2A1-209ENST00000546974 KRTAP15-1Q3LI76 137 aa4.51□□□□□ -1.69
COL2A1-209ENST00000546974 LCE3CQ5T5A8 94 aa4.47□□□□□ -1.69
COL2A1-209ENST00000546974 PRO0628Q9UI54 55 aa4.45□□□□□ -1.7
COL2A1-209ENST00000546974 PMAIP1Q13794 54 aa4.39□□□□□ -1.71
COL2A1-209ENST00000546974 MT1AP04731 61 aa4.35□□□□□ -1.71
COL2A1-209ENST00000546974 KRTAP6-1Q3LI64 71 aa4.33□□□□□ -1.72
COL2A1-209ENST00000546974 KRTAP5-2Q701N4 177 aa4.33□□□□□ -1.72
COL2A1-209ENST00000546974 KRTAP4-11Q9BYQ6 195 aa4.31□□□□□ -1.72
COL2A1-209ENST00000546974 H3BS24 57 aa4.29□□□□□ -1.72
COL2A1-209ENST00000546974 KRTAP9-4Q9BYQ2 154 aa4.22□□□□□ -1.73
COL2A1-209ENST00000546974 KRTAP9-6A8MVA2 160 aa4.21□□□□□ -1.74
COL2A1-209ENST00000546974 PRAC1Q96KF2 57 aa4.18□□□□□ -1.74
COL2A1-209ENST00000546974 KRTAP5-8O75690 187 aa4.17□□□□□ -1.74
COL2A1-209ENST00000546974 KRTAP6-2Q3LI66 62 aa4.15□□□□□ -1.75
COL2A1-209ENST00000546974 KTN1-AS1Q86SY8 53 aa4.15□□□□□ -1.75
COL2A1-209ENST00000546974 MUC5BQ9HC84 5762 aaPredicted RBP4.13□□□□□ -1.75
COL2A1-209ENST00000546974 AHNAKQ09666 5890 aaKnown RBP4.09□□□□□ -1.75
COL2A1-209ENST00000546974 OBSCNQ5VST9 7968 aa4.08□□□□□ -1.76
COL2A1-209ENST00000546974 A0A0A0MQY5 61 aa4.06□□□□□ -1.76
COL2A1-209ENST00000546974 MUC5ACP98088 5654 aa4.03□□□□□ -1.76
COL2A1-209ENST00000546974 MT3P25713 68 aa3.99□□□□□ -1.77
COL2A1-209ENST00000546974 KRTAP9-9Q9BYP9 154 aa3.98□□□□□ -1.77
COL2A1-209ENST00000546974 KRTAP5-1Q6L8H4 278 aa3.9□□□□□ -1.79
COL2A1-209ENST00000546974 LCE1EQ5T753 118 aa3.7□□□□□ -1.82
COL2A1-209ENST00000546974 KRTAP4-2Q9BYR5 136 aa3.49□□□□□ -1.85
COL2A1-209ENST00000546974 LCE1BQ5T7P3 118 aa3.47□□□□□ -1.85
COL2A1-209ENST00000546974 LCE1CQ5T751 118 aa3.44□□□□□ -1.86
COL2A1-209ENST00000546974 LUZP6Q538Z0 58 aa3.37□□□□□ -1.87
COL2A1-209ENST00000546974 KRTAP4-12Q9BQ66 201 aa3.2□□□□□ -1.9
COL2A1-209ENST00000546974 LCE3DQ9BYE3 92 aa3.2□□□□□ -1.9
COL2A1-209ENST00000546974 NDUFAF8A1L188 74 aa3.12□□□□□ -1.91
COL2A1-209ENST00000546974 KRTAP5-11Q6L8G4 156 aa3.12□□□□□ -1.91
COL2A1-209ENST00000546974 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.12□□□□□ -1.91
COL2A1-209ENST00000546974 LCE1FQ5T754 118 aa3.08□□□□□ -1.92
COL2A1-209ENST00000546974 LCE3EQ5T5B0 92 aa2.99□□□□□ -1.93
COL2A1-209ENST00000546974 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
COL2A1-209ENST00000546974 PHGR1C9JFL3 82 aa2.8□□□□□ -1.96
COL2A1-209ENST00000546974 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
COL2A1-209ENST00000546974 INE1O15225 51 aa2.58□□□□□ -2
COL2A1-209ENST00000546974 MUC19Q7Z5P9 8384 aa2.52□□□□□ -2.01
COL2A1-209ENST00000546974 PRM1P04553 51 aa2.37□□□□□ -2.03
COL2A1-209ENST00000546974 KRTAP21-1Q3LI58 79 aa2.14□□□□□ -2.07
COL2A1-209ENST00000546974 MUC16Q8WXI7 14507 aa1.84□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 51.1 ms