RNA–Protein interactions for RNA: ENST00000543397.1

SRGAP1-206, Transcript of SLIT-ROBO Rho GTPase activating protein 1, humanhuman

TSL 1 (best) BASIC

Gene SRGAP1, Length 5,652 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP1-206ENST00000543397 SPRR5A0A1B0GTR4 108 aa2.34□□□□□ -2.04
SRGAP1-206ENST00000543397 SYNE1Q8NF91 8797 aaKnown RBP2.33□□□□□ -2.04
SRGAP1-206ENST00000543397 LCE3EQ5T5B0 92 aa2.33□□□□□ -2.04
SRGAP1-206ENST00000543397 KRTAP19-6Q3LI70 58 aa2.32□□□□□ -2.04
SRGAP1-206ENST00000543397 KRTAP5-3Q6L8H2 238 aa2.32□□□□□ -2.04
SRGAP1-206ENST00000543397 LCE1FQ5T754 118 aa2.32□□□□□ -2.04
SRGAP1-206ENST00000543397 KRTAP9-7A8MTY7 169 aa2.31□□□□□ -2.04
SRGAP1-206ENST00000543397 MUC17Q685J3 4493 aa2.31□□□□□ -2.04
SRGAP1-206ENST00000543397 KRTAP20-1Q3LI63 56 aa2.31□□□□□ -2.04
SRGAP1-206ENST00000543397 FAT4Q6V0I7 4981 aa2.29□□□□□ -2.04
SRGAP1-206ENST00000543397 RNF213Q63HN8 5207 aa2.28□□□□□ -2.04
SRGAP1-206ENST00000543397 MT1EP04732 61 aa2.28□□□□□ -2.05
SRGAP1-206ENST00000543397 MT1LQ93083 61 aa2.27□□□□□ -2.05
SRGAP1-206ENST00000543397 FLGP20930 4061 aaPredicted RBP2.27□□□□□ -2.05
SRGAP1-206ENST00000543397 LCE3DQ9BYE3 92 aa2.26□□□□□ -2.05
SRGAP1-206ENST00000543397 KRTAP4-7Q9BYR0 210 aa2.22□□□□□ -2.05
SRGAP1-206ENST00000543397 MT1MQ8N339 61 aa2.21□□□□□ -2.06
SRGAP1-206ENST00000543397 MUC2Q02817 5179 aa2.21□□□□□ -2.06
SRGAP1-206ENST00000543397 MT4P47944 62 aa2.21□□□□□ -2.06
SRGAP1-206ENST00000543397 LCE1EQ5T753 118 aa2.21□□□□□ -2.06
SRGAP1-206ENST00000543397 HMCN2Q8NDA2 5059 aa2.2□□□□□ -2.06
SRGAP1-206ENST00000543397 LCE1AQ5T7P2 110 aa2.2□□□□□ -2.06
SRGAP1-206ENST00000543397 SYNE2Q8WXH0 6885 aaKnown RBP2.16□□□□□ -2.06
SRGAP1-206ENST00000543397 KRTAP2-2Q9BYT5 123 aa2.15□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP2-3P0C7H8 128 aa2.13□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP2-4Q9BYR9 128 aa2.13□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP4-3Q9BYR4 195 aa2.11□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP6-3Q3LI67 103 aa2.11□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP19-7Q3SYF9 63 aa2.11□□□□□ -2.07
SRGAP1-206ENST00000543397 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.08□□□□□ -2.08
SRGAP1-206ENST00000543397 LCE1DQ5T752 114 aa2.06□□□□□ -2.08
SRGAP1-206ENST00000543397 PRM1P04553 51 aa2.06□□□□□ -2.08
SRGAP1-206ENST00000543397 OBSCNQ5VST9 7968 aa2.05□□□□□ -2.08
SRGAP1-206ENST00000543397 LCE1BQ5T7P3 118 aa2.05□□□□□ -2.08
SRGAP1-206ENST00000543397 MT1AP04731 61 aa2.04□□□□□ -2.08
SRGAP1-206ENST00000543397 KRTAP2-1Q9BYU5 128 aa2.03□□□□□ -2.08
SRGAP1-206ENST00000543397 KRTAP9-9Q9BYP9 154 aa1.96□□□□□ -2.1
SRGAP1-206ENST00000543397 DSTQ03001 7570 aaKnown RBP1.95□□□□□ -2.1
SRGAP1-206ENST00000543397 KRTAP4-2Q9BYR5 136 aa1.95□□□□□ -2.1
SRGAP1-206ENST00000543397 KRTAP4-9Q9BYQ8 210 aa1.95□□□□□ -2.1
SRGAP1-206ENST00000543397 USH2AO75445 5202 aa1.94□□□□□ -2.1
SRGAP1-206ENST00000543397 MACF1Q9UPN3 7388 aaKnown RBP1.93□□□□□ -2.1
SRGAP1-206ENST00000543397 GPR98Q8WXG9 6306 aa1.92□□□□□ -2.1
SRGAP1-206ENST00000543397 FCGBPQ9Y6R7 5405 aaPredicted RBP1.91□□□□□ -2.1
SRGAP1-206ENST00000543397 KMT2DO14686 5537 aa1.91□□□□□ -2.1
SRGAP1-206ENST00000543397 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
SRGAP1-206ENST00000543397 KRTAP6-1Q3LI64 71 aa1.9□□□□□ -2.11
SRGAP1-206ENST00000543397 KRTAP6-2Q3LI66 62 aa1.89□□□□□ -2.11
SRGAP1-206ENST00000543397 HMCN1Q96RW7 5635 aa1.87□□□□□ -2.11
SRGAP1-206ENST00000543397 KRTAP9-6A8MVA2 160 aa1.83□□□□□ -2.12
SRGAP1-206ENST00000543397 NEBP20929 6669 aa1.83□□□□□ -2.12
SRGAP1-206ENST00000543397 KRTAP5-9P26371 169 aa1.83□□□□□ -2.12
SRGAP1-206ENST00000543397 MDN1Q9NU22 5596 aa1.79□□□□□ -2.12
SRGAP1-206ENST00000543397 SSPOA2VEC9 5147 aa1.78□□□□□ -2.12
SRGAP1-206ENST00000543397 MUC19Q7Z5P9 8384 aa1.76□□□□□ -2.13
SRGAP1-206ENST00000543397 LCE1CQ5T751 118 aa1.75□□□□□ -2.13
SRGAP1-206ENST00000543397 MUC12Q9UKN1 5478 aa1.72□□□□□ -2.13
SRGAP1-206ENST00000543397 KRTAP4-12Q9BQ66 201 aa1.66□□□□□ -2.14
SRGAP1-206ENST00000543397 KRTAP5-2Q701N4 177 aa1.65□□□□□ -2.14
SRGAP1-206ENST00000543397 KRTAP20-2Q3LI61 65 aa1.64□□□□□ -2.15
SRGAP1-206ENST00000543397 KRTAP5-4Q6L8H1 288 aa1.58□□□□□ -2.16
SRGAP1-206ENST00000543397 KRTAP4-11Q9BYQ6 195 aa1.51□□□□□ -2.17
SRGAP1-206ENST00000543397 KRTAP5-8O75690 187 aa1.48□□□□□ -2.17
SRGAP1-206ENST00000543397 AHNAK2Q8IVF2 5795 aa1.44□□□□□ -2.18
SRGAP1-206ENST00000543397 MUC5ACP98088 5654 aa1.43□□□□□ -2.18
SRGAP1-206ENST00000543397 KRTAP5-5Q701N2 237 aaPredicted RBP1.42□□□□□ -2.18
SRGAP1-206ENST00000543397 KRTAP4-4Q9BYR3 166 aa1.4□□□□□ -2.19
SRGAP1-206ENST00000543397 PHGR1C9JFL3 82 aa1.24□□□□□ -2.21
SRGAP1-206ENST00000543397 MUC5BQ9HC84 5762 aaPredicted RBP1.22□□□□□ -2.21
SRGAP1-206ENST00000543397 AHNAKQ09666 5890 aaKnown RBP1.21□□□□□ -2.22
SRGAP1-206ENST00000543397 KRTAP5-1Q6L8H4 278 aa1.12□□□□□ -2.23
SRGAP1-206ENST00000543397 KRTAP5-7Q6L8G8 165 aa1.11□□□□□ -2.23
SRGAP1-206ENST00000543397 KRTAP5-10Q6L8G5 202 aa1.11□□□□□ -2.23
SRGAP1-206ENST00000543397 KRTAP5-11Q6L8G4 156 aa1.08□□□□□ -2.24
SRGAP1-206ENST00000543397 KRTAP21-1Q3LI58 79 aa1.03□□□□□ -2.24
SRGAP1-206ENST00000543397 KRTAP21-2Q3LI59 83 aa0.98□□□□□ -2.25
SRGAP1-206ENST00000543397 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 77 of 20,778 RNA–protein pairs in 95.7 ms