RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 KRTAP6-2Q3LI66 62 aa5.25□□□□□ -1.57
HDAC4-215ENST00000543185 KMT2CQ8NEZ4 4911 aaKnown RBP5.24□□□□□ -1.57
HDAC4-215ENST00000543185 KRTAP4-3Q9BYR4 195 aa5.21□□□□□ -1.58
HDAC4-215ENST00000543185 LPAP08519 4548 aa5.19□□□□□ -1.58
HDAC4-215ENST00000543185 LCE5AQ5TCM9 118 aa5.14□□□□□ -1.59
HDAC4-215ENST00000543185 LCE1AQ5T7P2 110 aa5.12□□□□□ -1.59
HDAC4-215ENST00000543185 KRTAP4-9Q9BYQ8 210 aa5.1□□□□□ -1.59
HDAC4-215ENST00000543185 KRTAP9-4Q9BYQ2 154 aa5.02□□□□□ -1.61
HDAC4-215ENST00000543185 RYR2Q92736 4967 aa5.02□□□□□ -1.61
HDAC4-215ENST00000543185 SYNE2Q8WXH0 6885 aaKnown RBP5.01□□□□□ -1.61
HDAC4-215ENST00000543185 BIRC6Q9NR09 4857 aa4.99□□□□□ -1.61
HDAC4-215ENST00000543185 HERC2O95714 4834 aa4.98□□□□□ -1.61
HDAC4-215ENST00000543185 KRTAP6-1Q3LI64 71 aa4.97□□□□□ -1.61
HDAC4-215ENST00000543185 LCE4AQ5TA78 99 aa4.96□□□□□ -1.61
HDAC4-215ENST00000543185 KRTAP9-2Q9BYQ4 174 aa4.96□□□□□ -1.62
HDAC4-215ENST00000543185 KRTAP9-6A8MVA2 160 aa4.9□□□□□ -1.63
HDAC4-215ENST00000543185 KRTAP9-7A8MTY7 169 aa4.84□□□□□ -1.63
HDAC4-215ENST00000543185 KRTAP2-2Q9BYT5 123 aa4.84□□□□□ -1.64
HDAC4-215ENST00000543185 HERC1Q15751 4861 aa4.84□□□□□ -1.64
HDAC4-215ENST00000543185 KRTAP20-1Q3LI63 56 aa4.83□□□□□ -1.64
HDAC4-215ENST00000543185 LCE1CQ5T751 118 aa4.8□□□□□ -1.64
HDAC4-215ENST00000543185 LCE1EQ5T753 118 aa4.8□□□□□ -1.64
HDAC4-215ENST00000543185 LCE1FQ5T754 118 aa4.8□□□□□ -1.64
HDAC4-215ENST00000543185 HYDINQ4G0P3 5121 aa4.73□□□□□ -1.65
HDAC4-215ENST00000543185 LCE2AQ5TA79 106 aaPredicted RBP4.72□□□□□ -1.65
HDAC4-215ENST00000543185 KRTAP6-3Q3LI67 103 aa4.68□□□□□ -1.66
HDAC4-215ENST00000543185 KIAA1109Q2LD37 5005 aa4.65□□□□□ -1.67
HDAC4-215ENST00000543185 KRTAP9-6A0A140TA67 174 aa4.55□□□□□ -1.68
HDAC4-215ENST00000543185 SYNE1Q8NF91 8797 aaKnown RBP4.49□□□□□ -1.69
HDAC4-215ENST00000543185 HMCN2Q8NDA2 5059 aa4.47□□□□□ -1.69
HDAC4-215ENST00000543185 KRTAP9-9Q9BYP9 154 aa4.43□□□□□ -1.7
HDAC4-215ENST00000543185 EPPK1P58107 5090 aaKnown RBP4.41□□□□□ -1.7
HDAC4-215ENST00000543185 RNF213Q63HN8 5207 aa4.32□□□□□ -1.72
HDAC4-215ENST00000543185 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.24□□□□□ -1.73
HDAC4-215ENST00000543185 KRTAP4-11Q9BYQ6 195 aa4.22□□□□□ -1.73
HDAC4-215ENST00000543185 MUC2Q02817 5179 aa4.18□□□□□ -1.74
HDAC4-215ENST00000543185 FSIP2Q5CZC0 6907 aa4.15□□□□□ -1.75
HDAC4-215ENST00000543185 UBR4Q5T4S7 5183 aa4.14□□□□□ -1.75
HDAC4-215ENST00000543185 ABCA13Q86UQ4 5058 aa4.07□□□□□ -1.76
HDAC4-215ENST00000543185 FAT4Q6V0I7 4981 aa4.03□□□□□ -1.77
HDAC4-215ENST00000543185 KRTAP5-9P26371 169 aa3.98□□□□□ -1.77
HDAC4-215ENST00000543185 KRTAP20-2Q3LI61 65 aa3.87□□□□□ -1.79
HDAC4-215ENST00000543185 KRTAP5-5Q701N2 237 aaPredicted RBP3.79□□□□□ -1.8
HDAC4-215ENST00000543185 KRTAP4-6Q9BYQ5 205 aa3.75□□□□□ -1.81
HDAC4-215ENST00000543185 KMT2DO14686 5537 aa3.74□□□□□ -1.81
HDAC4-215ENST00000543185 KRTAP5-4Q6L8H1 288 aa3.72□□□□□ -1.81
HDAC4-215ENST00000543185 NEBP20929 6669 aa3.71□□□□□ -1.82
HDAC4-215ENST00000543185 MDN1Q9NU22 5596 aa3.65□□□□□ -1.82
HDAC4-215ENST00000543185 OBSCNQ5VST9 7968 aa3.64□□□□□ -1.83
HDAC4-215ENST00000543185 KRTAP4-4Q9BYR3 166 aa3.61□□□□□ -1.83
HDAC4-215ENST00000543185 FCGBPQ9Y6R7 5405 aaPredicted RBP3.59□□□□□ -1.83
HDAC4-215ENST00000543185 USH2AO75445 5202 aa3.47□□□□□ -1.85
HDAC4-215ENST00000543185 DSTQ03001 7570 aaKnown RBP3.47□□□□□ -1.85
HDAC4-215ENST00000543185 KRTAP4-12Q9BQ66 201 aa3.38□□□□□ -1.87
HDAC4-215ENST00000543185 KRTAP4-2Q9BYR5 136 aa3.38□□□□□ -1.87
HDAC4-215ENST00000543185 MACF1Q9UPN3 7388 aaKnown RBP3.27□□□□□ -1.89
HDAC4-215ENST00000543185 KRTAP5-3Q6L8H2 238 aa3.22□□□□□ -1.89
HDAC4-215ENST00000543185 MUC5ACP98088 5654 aa3.18□□□□□ -1.9
HDAC4-215ENST00000543185 SSPOA2VEC9 5147 aa3.17□□□□□ -1.9
HDAC4-215ENST00000543185 MUC12Q9UKN1 5478 aa3.11□□□□□ -1.91
HDAC4-215ENST00000543185 KRTAP5-10Q6L8G5 202 aa3.08□□□□□ -1.92
HDAC4-215ENST00000543185 MUC19Q7Z5P9 8384 aa3.07□□□□□ -1.92
HDAC4-215ENST00000543185 GPR98Q8WXG9 6306 aa3.06□□□□□ -1.92
HDAC4-215ENST00000543185 MUC5BQ9HC84 5762 aaPredicted RBP2.96□□□□□ -1.94
HDAC4-215ENST00000543185 HMCN1Q96RW7 5635 aa2.89□□□□□ -1.95
HDAC4-215ENST00000543185 KRTAP5-2Q701N4 177 aa2.75□□□□□ -1.97
HDAC4-215ENST00000543185 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
HDAC4-215ENST00000543185 AHNAK2Q8IVF2 5795 aa2.67□□□□□ -1.98
HDAC4-215ENST00000543185 PHGR1C9JFL3 82 aa2.66□□□□□ -1.98
HDAC4-215ENST00000543185 KRTAP5-8O75690 187 aa2.62□□□□□ -1.99
HDAC4-215ENST00000543185 KRTAP5-1Q6L8H4 278 aa2.57□□□□□ -2
HDAC4-215ENST00000543185 KRTAP21-1Q3LI58 79 aa2.55□□□□□ -2
HDAC4-215ENST00000543185 AHNAKQ09666 5890 aaKnown RBP2.52□□□□□ -2.01
HDAC4-215ENST00000543185 KRTAP21-2Q3LI59 83 aa2.47□□□□□ -2.01
HDAC4-215ENST00000543185 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.42□□□□□ -2.02
HDAC4-215ENST00000543185 KRTAP5-7Q6L8G8 165 aa1.82□□□□□ -2.12
HDAC4-215ENST00000543185 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 77 of 20,778 RNA–protein pairs in 12.7 ms