RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	KRTAP4-3	Q9BYR4	195 aa		5.07	□□□□□ -1.6
DDX55-209	ENST00000542286	LCE2D	Q5TA82	110 aa	Predicted RBP	5.06	□□□□□ -1.6
DDX55-209	ENST00000542286	KRTAP2-3	P0C7H8	128 aa		5.04	□□□□□ -1.6
DDX55-209	ENST00000542286	KRTAP2-4	Q9BYR9	128 aa		5.04	□□□□□ -1.6
DDX55-209	ENST00000542286	KRTAP2-1	Q9BYU5	128 aa		5.04	□□□□□ -1.6
DDX55-209	ENST00000542286	KRTAP9-2	Q9BYQ4	174 aa		5.04	□□□□□ -1.6
DDX55-209	ENST00000542286	LOC100996750	A0A140TA64	210 aa		5.01	□□□□□ -1.61
DDX55-209	ENST00000542286	MACF1	Q9UPN3	7388 aa	Known RBP	5	□□□□□ -1.61
DDX55-209	ENST00000542286	SYNE2	Q8WXH0	6885 aa	Known RBP	4.95	□□□□□ -1.62
DDX55-209	ENST00000542286	CRCT1	Q9UGL9	99 aa		4.92	□□□□□ -1.62
DDX55-209	ENST00000542286	MT1G	P13640	62 aa		4.9	□□□□□ -1.62
DDX55-209	ENST00000542286	MDN1	Q9NU22	5596 aa		4.86	□□□□□ -1.63
DDX55-209	ENST00000542286	MT1M	Q8N339	61 aa		4.83	□□□□□ -1.64
DDX55-209	ENST00000542286	SPRR2F	Q96RM1	72 aa		4.82	□□□□□ -1.64
DDX55-209	ENST00000542286	KRTAP19-3	Q7Z4W3	81 aa		4.82	□□□□□ -1.64
DDX55-209	ENST00000542286	KRTAP9-6	A0A140TA67	174 aa		4.81	□□□□□ -1.64
DDX55-209	ENST00000542286	SYNE1	Q8NF91	8797 aa	Known RBP	4.73	□□□□□ -1.65
DDX55-209	ENST00000542286	KRTAP19-4	Q3LI73	84 aa		4.71	□□□□□ -1.66
DDX55-209	ENST00000542286	LCE5A	Q5TCM9	118 aa		4.66	□□□□□ -1.66
DDX55-209	ENST00000542286	KRTAP12-4	P60329	112 aa		4.61	□□□□□ -1.67
DDX55-209	ENST00000542286	LCE3B	Q5TA77	95 aa		4.52	□□□□□ -1.69
DDX55-209	ENST00000542286	KRTAP4-9	Q9BYQ8	210 aa		4.49	□□□□□ -1.69
DDX55-209	ENST00000542286	OBSCN	Q5VST9	7968 aa		4.46	□□□□□ -1.69
DDX55-209	ENST00000542286	KRTAP9-1	A8MXZ3	250 aa	Predicted RBP	4.46	□□□□□ -1.7
DDX55-209	ENST00000542286	LCE1A	Q5T7P2	110 aa		4.45	□□□□□ -1.7
DDX55-209	ENST00000542286	KRTAP6-1	Q3LI64	71 aa		4.42	□□□□□ -1.7
DDX55-209	ENST00000542286	SPRR2E	P22531	72 aa		4.38	□□□□□ -1.71
DDX55-209	ENST00000542286	SPRR2B	P35325	72 aa		4.38	□□□□□ -1.71
DDX55-209	ENST00000542286	SPRR2A	P35326	72 aa		4.38	□□□□□ -1.71
DDX55-209	ENST00000542286	KRTAP5-9	P26371	169 aa		4.35	□□□□□ -1.71
DDX55-209	ENST00000542286	KRTAP9-7	A8MTY7	169 aa		4.35	□□□□□ -1.71
DDX55-209	ENST00000542286	KRTAP6-3	Q3LI67	103 aa		4.27	□□□□□ -1.73
DDX55-209	ENST00000542286	MT1A	P04731	61 aa		4.25	□□□□□ -1.73
DDX55-209	ENST00000542286	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.23	□□□□□ -1.73
DDX55-209	ENST00000542286	SPRR2D	P22532	72 aa		4.18	□□□□□ -1.74
DDX55-209	ENST00000542286	PRM1	P04553	51 aa		4.12	□□□□□ -1.75
DDX55-209	ENST00000542286	LCE3D	Q9BYE3	92 aa		4.12	□□□□□ -1.75
DDX55-209	ENST00000542286	LCE3E	Q5T5B0	92 aa		4.09	□□□□□ -1.75
DDX55-209	ENST00000542286	KRTAP9-4	Q9BYQ2	154 aa		4.02	□□□□□ -1.77
DDX55-209	ENST00000542286	NEB	P20929	6669 aa		3.99	□□□□□ -1.77
DDX55-209	ENST00000542286	KRTAP6-2	Q3LI66	62 aa		3.99	□□□□□ -1.77
DDX55-209	ENST00000542286	KRTAP20-1	Q3LI63	56 aa		3.85	□□□□□ -1.79
DDX55-209	ENST00000542286	KRTAP4-6	Q9BYQ5	205 aa		3.81	□□□□□ -1.8
DDX55-209	ENST00000542286	MT3	P25713	68 aa		3.81	□□□□□ -1.8
DDX55-209	ENST00000542286	MT4	P47944	62 aa		3.81	□□□□□ -1.8
DDX55-209	ENST00000542286	KRTAP5-4	Q6L8H1	288 aa		3.73	□□□□□ -1.81
DDX55-209	ENST00000542286	HMCN1	Q96RW7	5635 aa		3.72	□□□□□ -1.81
DDX55-209	ENST00000542286	KRTAP2-2	Q9BYT5	123 aa		3.72	□□□□□ -1.81
DDX55-209	ENST00000542286	KRTAP20-2	Q3LI61	65 aa		3.59	□□□□□ -1.83
DDX55-209	ENST00000542286	LCE1D	Q5T752	114 aa		3.53	□□□□□ -1.84
DDX55-209	ENST00000542286	LCE4A	Q5TA78	99 aa		3.47	□□□□□ -1.85
DDX55-209	ENST00000542286	KRTAP5-2	Q701N4	177 aa		3.46	□□□□□ -1.86
DDX55-209	ENST00000542286	MUC5AC	P98088	5654 aa		3.41	□□□□□ -1.86
DDX55-209	ENST00000542286	KRTAP5-3	Q6L8H2	238 aa		3.39	□□□□□ -1.87
DDX55-209	ENST00000542286	LCE1E	Q5T753	118 aa		3.39	□□□□□ -1.87
DDX55-209	ENST00000542286	GPR98	Q8WXG9	6306 aa		3.29	□□□□□ -1.88
DDX55-209	ENST00000542286	LCE1B	Q5T7P3	118 aa		3.28	□□□□□ -1.89
DDX55-209	ENST00000542286	LCE1F	Q5T754	118 aa		3.14	□□□□□ -1.91
DDX55-209	ENST00000542286	KRTAP4-11	Q9BYQ6	195 aa		3.09	□□□□□ -1.91
DDX55-209	ENST00000542286	KRTAP4-2	Q9BYR5	136 aa		3.04	□□□□□ -1.92
DDX55-209	ENST00000542286	KRTAP5-1	Q6L8H4	278 aa		3.03	□□□□□ -1.92
DDX55-209	ENST00000542286	AHNAK2	Q8IVF2	5795 aa		3.02	□□□□□ -1.93
DDX55-209	ENST00000542286	KRTAP5-10	Q6L8G5	202 aa		3.01	□□□□□ -1.93
DDX55-209	ENST00000542286	KRTAP9-9	Q9BYP9	154 aa		2.93	□□□□□ -1.94
DDX55-209	ENST00000542286	LCE1C	Q5T751	118 aa		2.93	□□□□□ -1.94
DDX55-209	ENST00000542286	KRTAP5-7	Q6L8G8	165 aa		2.92	□□□□□ -1.94
DDX55-209	ENST00000542286	KRTAP5-8	O75690	187 aa		2.87	□□□□□ -1.95
DDX55-209	ENST00000542286	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.87	□□□□□ -1.95
DDX55-209	ENST00000542286	KRTAP21-2	Q3LI59	83 aa		2.82	□□□□□ -1.96
DDX55-209	ENST00000542286	MUC19	Q7Z5P9	8384 aa		2.78	□□□□□ -1.96
DDX55-209	ENST00000542286	KRTAP4-4	Q9BYR3	166 aa		2.77	□□□□□ -1.97
DDX55-209	ENST00000542286	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.7	□□□□□ -1.98
DDX55-209	ENST00000542286	KRTAP4-12	Q9BQ66	201 aa		2.67	□□□□□ -1.98
DDX55-209	ENST00000542286	KRTAP21-1	Q3LI58	79 aa		2.61	□□□□□ -1.99
DDX55-209	ENST00000542286	AHNAK	Q09666	5890 aa	Known RBP	2.56	□□□□□ -2
DDX55-209	ENST00000542286	KRTAP5-11	Q6L8G4	156 aa		2.51	□□□□□ -2.01
DDX55-209	ENST00000542286	PHGR1	C9JFL3	82 aa		2.21	□□□□□ -2.05
DDX55-209	ENST00000542286	MUC16	Q8WXI7	14507 aa		1.44	□□□□□ -2.18

Retrieved 78 of 20,778 RNA–protein pairs in 122.8 ms