RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, humanhuman

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-209ENST00000542286 KRTAP4-3Q9BYR4 195 aa5.07□□□□□ -1.6
DDX55-209ENST00000542286 LCE2DQ5TA82 110 aaPredicted RBP5.06□□□□□ -1.6
DDX55-209ENST00000542286 KRTAP2-3P0C7H8 128 aa5.04□□□□□ -1.6
DDX55-209ENST00000542286 KRTAP2-4Q9BYR9 128 aa5.04□□□□□ -1.6
DDX55-209ENST00000542286 KRTAP2-1Q9BYU5 128 aa5.04□□□□□ -1.6
DDX55-209ENST00000542286 KRTAP9-2Q9BYQ4 174 aa5.04□□□□□ -1.6
DDX55-209ENST00000542286 LOC100996750A0A140TA64 210 aa5.01□□□□□ -1.61
DDX55-209ENST00000542286 MACF1Q9UPN3 7388 aaKnown RBP5□□□□□ -1.61
DDX55-209ENST00000542286 SYNE2Q8WXH0 6885 aaKnown RBP4.95□□□□□ -1.62
DDX55-209ENST00000542286 CRCT1Q9UGL9 99 aa4.92□□□□□ -1.62
DDX55-209ENST00000542286 MT1GP13640 62 aa4.9□□□□□ -1.62
DDX55-209ENST00000542286 MDN1Q9NU22 5596 aa4.86□□□□□ -1.63
DDX55-209ENST00000542286 MT1MQ8N339 61 aa4.83□□□□□ -1.64
DDX55-209ENST00000542286 SPRR2FQ96RM1 72 aa4.82□□□□□ -1.64
DDX55-209ENST00000542286 KRTAP19-3Q7Z4W3 81 aa4.82□□□□□ -1.64
DDX55-209ENST00000542286 KRTAP9-6A0A140TA67 174 aa4.81□□□□□ -1.64
DDX55-209ENST00000542286 SYNE1Q8NF91 8797 aaKnown RBP4.73□□□□□ -1.65
DDX55-209ENST00000542286 KRTAP19-4Q3LI73 84 aa4.71□□□□□ -1.66
DDX55-209ENST00000542286 LCE5AQ5TCM9 118 aa4.66□□□□□ -1.66
DDX55-209ENST00000542286 KRTAP12-4P60329 112 aa4.61□□□□□ -1.67
DDX55-209ENST00000542286 LCE3BQ5TA77 95 aa4.52□□□□□ -1.69
DDX55-209ENST00000542286 KRTAP4-9Q9BYQ8 210 aa4.49□□□□□ -1.69
DDX55-209ENST00000542286 OBSCNQ5VST9 7968 aa4.46□□□□□ -1.69
DDX55-209ENST00000542286 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.46□□□□□ -1.7
DDX55-209ENST00000542286 LCE1AQ5T7P2 110 aa4.45□□□□□ -1.7
DDX55-209ENST00000542286 KRTAP6-1Q3LI64 71 aa4.42□□□□□ -1.7
DDX55-209ENST00000542286 SPRR2EP22531 72 aa4.38□□□□□ -1.71
DDX55-209ENST00000542286 SPRR2BP35325 72 aa4.38□□□□□ -1.71
DDX55-209ENST00000542286 SPRR2AP35326 72 aa4.38□□□□□ -1.71
DDX55-209ENST00000542286 KRTAP5-9P26371 169 aa4.35□□□□□ -1.71
DDX55-209ENST00000542286 KRTAP9-7A8MTY7 169 aa4.35□□□□□ -1.71
DDX55-209ENST00000542286 KRTAP6-3Q3LI67 103 aa4.27□□□□□ -1.73
DDX55-209ENST00000542286 MT1AP04731 61 aa4.25□□□□□ -1.73
DDX55-209ENST00000542286 KRTAP5-5Q701N2 237 aaPredicted RBP4.23□□□□□ -1.73
DDX55-209ENST00000542286 SPRR2DP22532 72 aa4.18□□□□□ -1.74
DDX55-209ENST00000542286 PRM1P04553 51 aa4.12□□□□□ -1.75
DDX55-209ENST00000542286 LCE3DQ9BYE3 92 aa4.12□□□□□ -1.75
DDX55-209ENST00000542286 LCE3EQ5T5B0 92 aa4.09□□□□□ -1.75
DDX55-209ENST00000542286 KRTAP9-4Q9BYQ2 154 aa4.02□□□□□ -1.77
DDX55-209ENST00000542286 NEBP20929 6669 aa3.99□□□□□ -1.77
DDX55-209ENST00000542286 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
DDX55-209ENST00000542286 KRTAP20-1Q3LI63 56 aa3.85□□□□□ -1.79
DDX55-209ENST00000542286 KRTAP4-6Q9BYQ5 205 aa3.81□□□□□ -1.8
DDX55-209ENST00000542286 MT3P25713 68 aa3.81□□□□□ -1.8
DDX55-209ENST00000542286 MT4P47944 62 aa3.81□□□□□ -1.8
DDX55-209ENST00000542286 KRTAP5-4Q6L8H1 288 aa3.73□□□□□ -1.81
DDX55-209ENST00000542286 HMCN1Q96RW7 5635 aa3.72□□□□□ -1.81
DDX55-209ENST00000542286 KRTAP2-2Q9BYT5 123 aa3.72□□□□□ -1.81
DDX55-209ENST00000542286 KRTAP20-2Q3LI61 65 aa3.59□□□□□ -1.83
DDX55-209ENST00000542286 LCE1DQ5T752 114 aa3.53□□□□□ -1.84
DDX55-209ENST00000542286 LCE4AQ5TA78 99 aa3.47□□□□□ -1.85
DDX55-209ENST00000542286 KRTAP5-2Q701N4 177 aa3.46□□□□□ -1.86
DDX55-209ENST00000542286 MUC5ACP98088 5654 aa3.41□□□□□ -1.86
DDX55-209ENST00000542286 KRTAP5-3Q6L8H2 238 aa3.39□□□□□ -1.87
DDX55-209ENST00000542286 LCE1EQ5T753 118 aa3.39□□□□□ -1.87
DDX55-209ENST00000542286 GPR98Q8WXG9 6306 aa3.29□□□□□ -1.88
DDX55-209ENST00000542286 LCE1BQ5T7P3 118 aa3.28□□□□□ -1.89
DDX55-209ENST00000542286 LCE1FQ5T754 118 aa3.14□□□□□ -1.91
DDX55-209ENST00000542286 KRTAP4-11Q9BYQ6 195 aa3.09□□□□□ -1.91
DDX55-209ENST00000542286 KRTAP4-2Q9BYR5 136 aa3.04□□□□□ -1.92
DDX55-209ENST00000542286 KRTAP5-1Q6L8H4 278 aa3.03□□□□□ -1.92
DDX55-209ENST00000542286 AHNAK2Q8IVF2 5795 aa3.02□□□□□ -1.93
DDX55-209ENST00000542286 KRTAP5-10Q6L8G5 202 aa3.01□□□□□ -1.93
DDX55-209ENST00000542286 KRTAP9-9Q9BYP9 154 aa2.93□□□□□ -1.94
DDX55-209ENST00000542286 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
DDX55-209ENST00000542286 KRTAP5-7Q6L8G8 165 aa2.92□□□□□ -1.94
DDX55-209ENST00000542286 KRTAP5-8O75690 187 aa2.87□□□□□ -1.95
DDX55-209ENST00000542286 MUC5BQ9HC84 5762 aaPredicted RBP2.87□□□□□ -1.95
DDX55-209ENST00000542286 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
DDX55-209ENST00000542286 MUC19Q7Z5P9 8384 aa2.78□□□□□ -1.96
DDX55-209ENST00000542286 KRTAP4-4Q9BYR3 166 aa2.77□□□□□ -1.97
DDX55-209ENST00000542286 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.7□□□□□ -1.98
DDX55-209ENST00000542286 KRTAP4-12Q9BQ66 201 aa2.67□□□□□ -1.98
DDX55-209ENST00000542286 KRTAP21-1Q3LI58 79 aa2.61□□□□□ -1.99
DDX55-209ENST00000542286 AHNAKQ09666 5890 aaKnown RBP2.56□□□□□ -2
DDX55-209ENST00000542286 KRTAP5-11Q6L8G4 156 aa2.51□□□□□ -2.01
DDX55-209ENST00000542286 PHGR1C9JFL3 82 aa2.21□□□□□ -2.05
DDX55-209ENST00000542286 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 64.3 ms