RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MACF1Q9UPN3 7388 aaKnown RBP5.09□□□□□ -1.6
CLIP1-216ENST00000541410 KRTAP9-6A8MVA2 160 aa5.02□□□□□ -1.61
CLIP1-216ENST00000541410 CRCT1Q9UGL9 99 aa5.01□□□□□ -1.61
CLIP1-216ENST00000541410 SPRR2FQ96RM1 72 aa4.99□□□□□ -1.61
CLIP1-216ENST00000541410 SYNE2Q8WXH0 6885 aaKnown RBP4.98□□□□□ -1.61
CLIP1-216ENST00000541410 A0A0A0MQY5 61 aa4.98□□□□□ -1.61
CLIP1-216ENST00000541410 KRTAP4-3Q9BYR4 195 aa4.97□□□□□ -1.61
CLIP1-216ENST00000541410 KRTAP19-3Q7Z4W3 81 aa4.92□□□□□ -1.62
CLIP1-216ENST00000541410 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.89□□□□□ -1.63
CLIP1-216ENST00000541410 MT1MQ8N339 61 aa4.87□□□□□ -1.63
CLIP1-216ENST00000541410 KRTAP9-6A0A140TA67 174 aa4.86□□□□□ -1.63
CLIP1-216ENST00000541410 MT1GP13640 62 aa4.85□□□□□ -1.63
CLIP1-216ENST00000541410 DSTQ03001 7570 aaKnown RBP4.85□□□□□ -1.63
CLIP1-216ENST00000541410 KRTAP19-4Q3LI73 84 aa4.84□□□□□ -1.63
CLIP1-216ENST00000541410 LCE5AQ5TCM9 118 aa4.8□□□□□ -1.64
CLIP1-216ENST00000541410 MDN1Q9NU22 5596 aa4.77□□□□□ -1.65
CLIP1-216ENST00000541410 LCE3BQ5TA77 95 aa4.75□□□□□ -1.65
CLIP1-216ENST00000541410 KRTAP5-9P26371 169 aa4.71□□□□□ -1.66
CLIP1-216ENST00000541410 LCE1AQ5T7P2 110 aa4.68□□□□□ -1.66
CLIP1-216ENST00000541410 SPRR2EP22531 72 aa4.64□□□□□ -1.67
CLIP1-216ENST00000541410 SPRR2BP35325 72 aa4.64□□□□□ -1.67
CLIP1-216ENST00000541410 SPRR2AP35326 72 aa4.64□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP9-9Q9BYP9 154 aa4.62□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP9-4Q9BYQ2 154 aa4.62□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP2-3P0C7H8 128 aa4.61□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP2-4Q9BYR9 128 aa4.61□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP2-1Q9BYU5 128 aa4.61□□□□□ -1.67
CLIP1-216ENST00000541410 KRTAP4-12Q9BQ66 201 aa4.55□□□□□ -1.68
CLIP1-216ENST00000541410 KRTAP6-3Q3LI67 103 aa4.5□□□□□ -1.69
CLIP1-216ENST00000541410 SPRR2DP22532 72 aa4.45□□□□□ -1.7
CLIP1-216ENST00000541410 LCE1DQ5T752 114 aa4.44□□□□□ -1.7
CLIP1-216ENST00000541410 KRTAP6-1Q3LI64 71 aa4.37□□□□□ -1.71
CLIP1-216ENST00000541410 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
CLIP1-216ENST00000541410 KRTAP4-9Q9BYQ8 210 aa4.36□□□□□ -1.71
CLIP1-216ENST00000541410 KRTAP4-2Q9BYR5 136 aa4.36□□□□□ -1.71
CLIP1-216ENST00000541410 INE1O15225 51 aa4.34□□□□□ -1.71
CLIP1-216ENST00000541410 KRTAP5-5Q701N2 237 aaPredicted RBP4.32□□□□□ -1.72
CLIP1-216ENST00000541410 KRTAP9-7A8MTY7 169 aa4.3□□□□□ -1.72
CLIP1-216ENST00000541410 MT1AP04731 61 aa4.29□□□□□ -1.72
CLIP1-216ENST00000541410 KRTAP5-3Q6L8H2 238 aa4.28□□□□□ -1.72
CLIP1-216ENST00000541410 NEBP20929 6669 aa4.21□□□□□ -1.74
CLIP1-216ENST00000541410 KRTAP4-11Q9BYQ6 195 aa4.11□□□□□ -1.75
CLIP1-216ENST00000541410 KRTAP12-4P60329 112 aa4.05□□□□□ -1.76
CLIP1-216ENST00000541410 LCE4AQ5TA78 99 aa4.02□□□□□ -1.77
CLIP1-216ENST00000541410 OBSCNQ5VST9 7968 aa4□□□□□ -1.77
CLIP1-216ENST00000541410 KRTAP6-2Q3LI66 62 aa3.99□□□□□ -1.77
CLIP1-216ENST00000541410 KRTAP5-4Q6L8H1 288 aa3.97□□□□□ -1.77
CLIP1-216ENST00000541410 MT4P47944 62 aa3.96□□□□□ -1.78
CLIP1-216ENST00000541410 LCE3DQ9BYE3 92 aa3.94□□□□□ -1.78
CLIP1-216ENST00000541410 MT3P25713 68 aa3.87□□□□□ -1.79
CLIP1-216ENST00000541410 KRTAP2-2Q9BYT5 123 aa3.84□□□□□ -1.79
CLIP1-216ENST00000541410 LCE3EQ5T5B0 92 aa3.83□□□□□ -1.8
CLIP1-216ENST00000541410 KRTAP20-1Q3LI63 56 aa3.79□□□□□ -1.8
CLIP1-216ENST00000541410 KRTAP20-2Q3LI61 65 aa3.77□□□□□ -1.81
CLIP1-216ENST00000541410 HMCN1Q96RW7 5635 aa3.75□□□□□ -1.81
CLIP1-216ENST00000541410 KRTAP5-2Q701N4 177 aa3.64□□□□□ -1.83
CLIP1-216ENST00000541410 PRM1P04553 51 aa3.54□□□□□ -1.84
CLIP1-216ENST00000541410 LCE1BQ5T7P3 118 aa3.26□□□□□ -1.89
CLIP1-216ENST00000541410 LCE1EQ5T753 118 aa3.23□□□□□ -1.89
CLIP1-216ENST00000541410 MUC5ACP98088 5654 aa3.22□□□□□ -1.89
CLIP1-216ENST00000541410 KRTAP5-1Q6L8H4 278 aa3.17□□□□□ -1.9
CLIP1-216ENST00000541410 AHNAK2Q8IVF2 5795 aa3.13□□□□□ -1.91
CLIP1-216ENST00000541410 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.1□□□□□ -1.91
CLIP1-216ENST00000541410 KRTAP5-8O75690 187 aa3.09□□□□□ -1.91
CLIP1-216ENST00000541410 KRTAP5-10Q6L8G5 202 aa3.08□□□□□ -1.92
CLIP1-216ENST00000541410 LCE1CQ5T751 118 aa3.05□□□□□ -1.92
CLIP1-216ENST00000541410 LCE1FQ5T754 118 aa2.97□□□□□ -1.93
CLIP1-216ENST00000541410 KRTAP5-7Q6L8G8 165 aa2.92□□□□□ -1.94
CLIP1-216ENST00000541410 GPR98Q8WXG9 6306 aa2.84□□□□□ -1.95
CLIP1-216ENST00000541410 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
CLIP1-216ENST00000541410 MUC5BQ9HC84 5762 aaPredicted RBP2.78□□□□□ -1.96
CLIP1-216ENST00000541410 KRTAP5-11Q6L8G4 156 aa2.71□□□□□ -1.98
CLIP1-216ENST00000541410 KRTAP4-4Q9BYR3 166 aa2.66□□□□□ -1.98
CLIP1-216ENST00000541410 MUC19Q7Z5P9 8384 aa2.4□□□□□ -2.02
CLIP1-216ENST00000541410 AHNAKQ09666 5890 aaKnown RBP2.31□□□□□ -2.04
CLIP1-216ENST00000541410 PHGR1C9JFL3 82 aa2.31□□□□□ -2.04
CLIP1-216ENST00000541410 KRTAP21-1Q3LI58 79 aa2.12□□□□□ -2.07
CLIP1-216ENST00000541410 MUC16Q8WXI7 14507 aa1.46□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 77.7 ms