RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 MT1XP80297 61 aa3.95□□□□□ -1.78
CLIP1-212ENST00000540304 KMT2DO14686 5537 aa3.87□□□□□ -1.79
CLIP1-212ENST00000540304 FSIP2Q5CZC0 6907 aa3.85□□□□□ -1.79
CLIP1-212ENST00000540304 LCE3AQ5TA76 89 aa3.84□□□□□ -1.8
CLIP1-212ENST00000540304 KRTAP10-7P60409 375 aaPredicted RBP3.8□□□□□ -1.8
CLIP1-212ENST00000540304 KRTAP10-12P60413 245 aa3.8□□□□□ -1.8
CLIP1-212ENST00000540304 SSPOA2VEC9 5147 aa3.78□□□□□ -1.81
CLIP1-212ENST00000540304 KRTAP8-1Q8IUC2 63 aa3.76□□□□□ -1.81
CLIP1-212ENST00000540304 KRTAP12-3P60328 96 aa3.68□□□□□ -1.82
CLIP1-212ENST00000540304 KRTAP19-6Q3LI70 58 aa3.66□□□□□ -1.82
CLIP1-212ENST00000540304 KRTAP19-5Q3LI72 72 aa3.6□□□□□ -1.83
CLIP1-212ENST00000540304 FCGBPQ9Y6R7 5405 aaPredicted RBP3.54□□□□□ -1.84
CLIP1-212ENST00000540304 KRTAP19-7Q3SYF9 63 aa3.52□□□□□ -1.85
CLIP1-212ENST00000540304 MUC12Q9UKN1 5478 aa3.48□□□□□ -1.85
CLIP1-212ENST00000540304 LCE3CQ5T5A8 94 aa3.45□□□□□ -1.86
CLIP1-212ENST00000540304 MT1EP04732 61 aa3.45□□□□□ -1.86
CLIP1-212ENST00000540304 MACF1Q9UPN3 7388 aaKnown RBP3.43□□□□□ -1.86
CLIP1-212ENST00000540304 MT1LQ93083 61 aa3.4□□□□□ -1.86
CLIP1-212ENST00000540304 LCE1FQ5T754 118 aa3.39□□□□□ -1.87
CLIP1-212ENST00000540304 SYNE2Q8WXH0 6885 aaKnown RBP3.36□□□□□ -1.87
CLIP1-212ENST00000540304 CRCT1Q9UGL9 99 aa3.33□□□□□ -1.88
CLIP1-212ENST00000540304 KRTAP9-6A8MVA2 160 aa3.32□□□□□ -1.88
CLIP1-212ENST00000540304 DSTQ03001 7570 aaKnown RBP3.3□□□□□ -1.88
CLIP1-212ENST00000540304 KRTAP19-3Q7Z4W3 81 aa3.28□□□□□ -1.88
CLIP1-212ENST00000540304 SPRR2FQ96RM1 72 aa3.27□□□□□ -1.89
CLIP1-212ENST00000540304 KRTAP4-3Q9BYR4 195 aa3.27□□□□□ -1.89
CLIP1-212ENST00000540304 MDN1Q9NU22 5596 aa3.26□□□□□ -1.89
CLIP1-212ENST00000540304 KRTAP2-2Q9BYT5 123 aa3.26□□□□□ -1.89
CLIP1-212ENST00000540304 MT1GP13640 62 aa3.26□□□□□ -1.89
CLIP1-212ENST00000540304 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.24□□□□□ -1.89
CLIP1-212ENST00000540304 MT1MQ8N339 61 aa3.23□□□□□ -1.89
CLIP1-212ENST00000540304 LCE1AQ5T7P2 110 aa3.23□□□□□ -1.89
CLIP1-212ENST00000540304 KRTAP5-9P26371 169 aa3.18□□□□□ -1.9
CLIP1-212ENST00000540304 KRTAP2-3P0C7H8 128 aa3.14□□□□□ -1.91
CLIP1-212ENST00000540304 KRTAP2-4Q9BYR9 128 aa3.14□□□□□ -1.91
CLIP1-212ENST00000540304 KRTAP2-1Q9BYU5 128 aa3.14□□□□□ -1.91
CLIP1-212ENST00000540304 KRTAP6-3Q3LI67 103 aa3.12□□□□□ -1.91
CLIP1-212ENST00000540304 KRTAP5-11Q6L8G4 156 aa3.1□□□□□ -1.91
CLIP1-212ENST00000540304 LCE1EQ5T753 118 aa3.07□□□□□ -1.92
CLIP1-212ENST00000540304 SPRR2EP22531 72 aa3.06□□□□□ -1.92
CLIP1-212ENST00000540304 SPRR2BP35325 72 aa3.06□□□□□ -1.92
CLIP1-212ENST00000540304 SPRR2AP35326 72 aa3.06□□□□□ -1.92
CLIP1-212ENST00000540304 KRTAP12-4P60329 112 aa3□□□□□ -1.93
CLIP1-212ENST00000540304 SYNE1Q8NF91 8797 aaKnown RBP2.98□□□□□ -1.93
CLIP1-212ENST00000540304 MT3P25713 68 aa2.97□□□□□ -1.93
CLIP1-212ENST00000540304 LCE3EQ5T5B0 92 aa2.96□□□□□ -1.94
CLIP1-212ENST00000540304 SPRR2DP22532 72 aa2.95□□□□□ -1.94
CLIP1-212ENST00000540304 KRTAP5-5Q701N2 237 aaPredicted RBP2.9□□□□□ -1.94
CLIP1-212ENST00000540304 MT1AP04731 61 aa2.89□□□□□ -1.95
CLIP1-212ENST00000540304 HMCN1Q96RW7 5635 aa2.88□□□□□ -1.95
CLIP1-212ENST00000540304 KRTAP6-1Q3LI64 71 aa2.87□□□□□ -1.95
CLIP1-212ENST00000540304 NEBP20929 6669 aa2.82□□□□□ -1.96
CLIP1-212ENST00000540304 OBSCNQ5VST9 7968 aa2.8□□□□□ -1.96
CLIP1-212ENST00000540304 KRTAP5-1Q6L8H4 278 aa2.78□□□□□ -1.96
CLIP1-212ENST00000540304 PRM1P04553 51 aa2.78□□□□□ -1.96
CLIP1-212ENST00000540304 KRTAP5-4Q6L8H1 288 aa2.72□□□□□ -1.97
CLIP1-212ENST00000540304 LCE3DQ9BYE3 92 aa2.71□□□□□ -1.98
CLIP1-212ENST00000540304 KRTAP4-4Q9BYR3 166 aa2.69□□□□□ -1.98
CLIP1-212ENST00000540304 KRTAP6-2Q3LI66 62 aa2.61□□□□□ -1.99
CLIP1-212ENST00000540304 MUC5BQ9HC84 5762 aaPredicted RBP2.61□□□□□ -1.99
CLIP1-212ENST00000540304 GPR98Q8WXG9 6306 aa2.61□□□□□ -1.99
CLIP1-212ENST00000540304 MT4P47944 62 aa2.58□□□□□ -2
CLIP1-212ENST00000540304 KRTAP20-1Q3LI63 56 aa2.54□□□□□ -2
CLIP1-212ENST00000540304 KRTAP20-2Q3LI61 65 aa2.52□□□□□ -2.01
CLIP1-212ENST00000540304 KRTAP5-2Q701N4 177 aa2.47□□□□□ -2.01
CLIP1-212ENST00000540304 MUC19Q7Z5P9 8384 aa2.32□□□□□ -2.04
CLIP1-212ENST00000540304 MUC5ACP98088 5654 aa2.21□□□□□ -2.06
CLIP1-212ENST00000540304 LCE1BQ5T7P3 118 aa2.13□□□□□ -2.07
CLIP1-212ENST00000540304 AHNAKQ09666 5890 aaKnown RBP2.13□□□□□ -2.07
CLIP1-212ENST00000540304 AHNAK2Q8IVF2 5795 aa2.12□□□□□ -2.07
CLIP1-212ENST00000540304 KRTAP5-10Q6L8G5 202 aa2.1□□□□□ -2.07
CLIP1-212ENST00000540304 LCE1CQ5T751 118 aa2.07□□□□□ -2.08
CLIP1-212ENST00000540304 KRTAP5-8O75690 187 aa2.05□□□□□ -2.08
CLIP1-212ENST00000540304 KRTAP5-7Q6L8G8 165 aa2.02□□□□□ -2.09
CLIP1-212ENST00000540304 KRTAP21-2Q3LI59 83 aa1.87□□□□□ -2.11
CLIP1-212ENST00000540304 KRTAP21-1Q3LI58 79 aa1.79□□□□□ -2.12
CLIP1-212ENST00000540304 PHGR1C9JFL3 82 aa1.56□□□□□ -2.16
CLIP1-212ENST00000540304 MUC16Q8WXI7 14507 aa0.99□□□□□ -2.25
Retrieved 78 of 20,778 RNA–protein pairs in 92 ms