RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 KRTAP4-11Q9BYQ6 195 aa5.56□□□□□ -1.52
UBE3B-212ENST00000540230 C10orf95Q9H7T3 257 aa5.56□□□□□ -1.52
UBE3B-212ENST00000540230 KRTAP19-5Q3LI72 72 aa5.55□□□□□ -1.52
UBE3B-212ENST00000540230 KRTAP4-2Q9BYR5 136 aa5.55□□□□□ -1.52
UBE3B-212ENST00000540230 KRTAP19-3Q7Z4W3 81 aa5.53□□□□□ -1.52
UBE3B-212ENST00000540230 DSTQ03001 7570 aaKnown RBP5.52□□□□□ -1.53
UBE3B-212ENST00000540230 LCE3AQ5TA76 89 aa5.48□□□□□ -1.53
UBE3B-212ENST00000540230 UQCR11O14957 56 aa5.47□□□□□ -1.53
UBE3B-212ENST00000540230 TNP1P09430 55 aa5.46□□□□□ -1.54
UBE3B-212ENST00000540230 KRTAP23-1A1A580 65 aa5.44□□□□□ -1.54
UBE3B-212ENST00000540230 MT1GP13640 62 aa5.38□□□□□ -1.55
UBE3B-212ENST00000540230 MT1LQ93083 61 aa5.38□□□□□ -1.55
UBE3B-212ENST00000540230 MIR22HGQ0VDD5 57 aa5.37□□□□□ -1.55
UBE3B-212ENST00000540230 PSPHP1O15172 72 aa5.34□□□□□ -1.55
UBE3B-212ENST00000540230 MT1MQ8N339 61 aa5.34□□□□□ -1.55
UBE3B-212ENST00000540230 A0A0A0MQY5 61 aa5.32□□□□□ -1.56
UBE3B-212ENST00000540230 Q1T7F1 81 aa5.31□□□□□ -1.56
UBE3B-212ENST00000540230 PP632Q6XCG6 107 aa5.31□□□□□ -1.56
UBE3B-212ENST00000540230 V9GYY9 64 aa5.29□□□□□ -1.56
UBE3B-212ENST00000540230 KRTAP4-3Q9BYR4 195 aa5.26□□□□□ -1.57
UBE3B-212ENST00000540230 KRTAP5-3Q6L8H2 238 aa5.24□□□□□ -1.57
UBE3B-212ENST00000540230 KRTAP12-3P60328 96 aa5.23□□□□□ -1.57
UBE3B-212ENST00000540230 K7ERS5 55 aa5.18□□□□□ -1.58
UBE3B-212ENST00000540230 KRTAP25-1Q3LHN0 102 aa5.18□□□□□ -1.58
UBE3B-212ENST00000540230 RPS28P62857 69 aaKnown RBP5.16□□□□□ -1.58
UBE3B-212ENST00000540230 A6NED7 52 aa5.13□□□□□ -1.59
UBE3B-212ENST00000540230 MT4P47944 62 aa5.05□□□□□ -1.6
UBE3B-212ENST00000540230 HMCN1Q96RW7 5635 aa5.04□□□□□ -1.6
UBE3B-212ENST00000540230 KRTAP5-4Q6L8H1 288 aa5.03□□□□□ -1.6
UBE3B-212ENST00000540230 GPR98Q8WXG9 6306 aa4.97□□□□□ -1.61
UBE3B-212ENST00000540230 CDC42SE1Q9NRR8 79 aa4.97□□□□□ -1.61
UBE3B-212ENST00000540230 KRTAP15-1Q3LI76 137 aa4.95□□□□□ -1.62
UBE3B-212ENST00000540230 ROMO1P60602 79 aa4.91□□□□□ -1.62
UBE3B-212ENST00000540230 KRTAP5-5Q701N2 237 aaPredicted RBP4.9□□□□□ -1.63
UBE3B-212ENST00000540230 AHNAK2Q8IVF2 5795 aa4.85□□□□□ -1.63
UBE3B-212ENST00000540230 LCE3CQ5T5A8 94 aa4.82□□□□□ -1.64
UBE3B-212ENST00000540230 PRO0628Q9UI54 55 aa4.82□□□□□ -1.64
UBE3B-212ENST00000540230 SYNE1Q8NF91 8797 aaKnown RBP4.79□□□□□ -1.64
UBE3B-212ENST00000540230 KRTAP20-2Q3LI61 65 aa4.75□□□□□ -1.65
UBE3B-212ENST00000540230 SPRR5A0A1B0GTR4 108 aa4.69□□□□□ -1.66
UBE3B-212ENST00000540230 KRTAP5-10Q6L8G5 202 aa4.68□□□□□ -1.66
UBE3B-212ENST00000540230 KRTAP12-4P60329 112 aa4.67□□□□□ -1.66
UBE3B-212ENST00000540230 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
UBE3B-212ENST00000540230 BRK1Q8WUW1 75 aa4.62□□□□□ -1.67
UBE3B-212ENST00000540230 MT1AP04731 61 aa4.56□□□□□ -1.68
UBE3B-212ENST00000540230 KRTAP6-1Q3LI64 71 aa4.56□□□□□ -1.68
UBE3B-212ENST00000540230 PMAIP1Q13794 54 aa4.53□□□□□ -1.68
UBE3B-212ENST00000540230 KRTAP5-7Q6L8G8 165 aa4.46□□□□□ -1.69
UBE3B-212ENST00000540230 KRTAP5-2Q701N4 177 aa4.43□□□□□ -1.7
UBE3B-212ENST00000540230 PRAC1Q96KF2 57 aa4.41□□□□□ -1.7
UBE3B-212ENST00000540230 KTN1-AS1Q86SY8 53 aa4.38□□□□□ -1.71
UBE3B-212ENST00000540230 KRTAP6-2Q3LI66 62 aa4.33□□□□□ -1.72
UBE3B-212ENST00000540230 OBSCNQ5VST9 7968 aa4.26□□□□□ -1.73
UBE3B-212ENST00000540230 KRTAP5-8O75690 187 aa4.17□□□□□ -1.74
UBE3B-212ENST00000540230 MT3P25713 68 aa4.15□□□□□ -1.75
UBE3B-212ENST00000540230 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
UBE3B-212ENST00000540230 MUC5BQ9HC84 5762 aaPredicted RBP3.96□□□□□ -1.78
UBE3B-212ENST00000540230 MUC5ACP98088 5654 aa3.93□□□□□ -1.78
UBE3B-212ENST00000540230 NDUFAF8A1L188 74 aa3.92□□□□□ -1.78
UBE3B-212ENST00000540230 AHNAKQ09666 5890 aaKnown RBP3.91□□□□□ -1.78
UBE3B-212ENST00000540230 LCE1EQ5T753 118 aa3.78□□□□□ -1.8
UBE3B-212ENST00000540230 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.76□□□□□ -1.81
UBE3B-212ENST00000540230 KRTAP5-11Q6L8G4 156 aa3.73□□□□□ -1.81
UBE3B-212ENST00000540230 LCE1BQ5T7P3 118 aa3.59□□□□□ -1.84
UBE3B-212ENST00000540230 LCE1CQ5T751 118 aa3.52□□□□□ -1.85
UBE3B-212ENST00000540230 LCE1FQ5T754 118 aa3.52□□□□□ -1.85
UBE3B-212ENST00000540230 LUZP6Q538Z0 58 aa3.5□□□□□ -1.85
UBE3B-212ENST00000540230 LCE3DQ9BYE3 92 aa3.48□□□□□ -1.85
UBE3B-212ENST00000540230 LCE3EQ5T5B0 92 aa3.29□□□□□ -1.88
UBE3B-212ENST00000540230 KRTAP4-4Q9BYR3 166 aa3.12□□□□□ -1.91
UBE3B-212ENST00000540230 INE1O15225 51 aa3.03□□□□□ -1.92
UBE3B-212ENST00000540230 KRTAP21-2Q3LI59 83 aa3□□□□□ -1.93
UBE3B-212ENST00000540230 PHGR1C9JFL3 82 aa2.75□□□□□ -1.97
UBE3B-212ENST00000540230 MUC19Q7Z5P9 8384 aa2.61□□□□□ -1.99
UBE3B-212ENST00000540230 PRM1P04553 51 aa2.54□□□□□ -2
UBE3B-212ENST00000540230 KRTAP21-1Q3LI58 79 aa2.02□□□□□ -2.09
UBE3B-212ENST00000540230 MUC16Q8WXI7 14507 aa1.85□□□□□ -2.11
Retrieved 77 of 20,778 RNA–protein pairs in 250 ms