RNA–Protein interactions for RNA: ENST00000539661.5

RAB40C-205, Transcript of RAB40C, member RAS oncogene family, humanhuman

APPRIS P1 TSL 3 BASIC

Gene RAB40C, Length 2,609 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-205ENST00000539661 MT1LQ93083 61 aa5.96□□□□□ -1.45
RAB40C-205ENST00000539661 MT1EP04732 61 aa5.91□□□□□ -1.46
RAB40C-205ENST00000539661 DSTQ03001 7570 aaKnown RBP5.9□□□□□ -1.47
RAB40C-205ENST00000539661 KRTAP19-6Q3LI70 58 aa5.85□□□□□ -1.47
RAB40C-205ENST00000539661 MACF1Q9UPN3 7388 aaKnown RBP5.8□□□□□ -1.48
RAB40C-205ENST00000539661 SYNE2Q8WXH0 6885 aaKnown RBP5.77□□□□□ -1.49
RAB40C-205ENST00000539661 KRTAP4-3Q9BYR4 195 aa5.64□□□□□ -1.51
RAB40C-205ENST00000539661 LOC100996750A0A140TA64 210 aa5.58□□□□□ -1.52
RAB40C-205ENST00000539661 MDN1Q9NU22 5596 aa5.56□□□□□ -1.52
RAB40C-205ENST00000539661 KRTAP12-4P60329 112 aa5.56□□□□□ -1.52
RAB40C-205ENST00000539661 MT1GP13640 62 aa5.54□□□□□ -1.52
RAB40C-205ENST00000539661 MT1MQ8N339 61 aa5.49□□□□□ -1.53
RAB40C-205ENST00000539661 KRTAP19-3Q7Z4W3 81 aa5.45□□□□□ -1.54
RAB40C-205ENST00000539661 CRCT1Q9UGL9 99 aa5.43□□□□□ -1.54
RAB40C-205ENST00000539661 SPRR2FQ96RM1 72 aa5.41□□□□□ -1.54
RAB40C-205ENST00000539661 KRTAP9-2Q9BYQ4 174 aa5.4□□□□□ -1.55
RAB40C-205ENST00000539661 SYNE1Q8NF91 8797 aaKnown RBP5.34□□□□□ -1.55
RAB40C-205ENST00000539661 MT1AP04731 61 aa5.27□□□□□ -1.57
RAB40C-205ENST00000539661 KRTAP9-6A0A140TA67 174 aa5.23□□□□□ -1.57
RAB40C-205ENST00000539661 LCE5AQ5TCM9 118 aa5.22□□□□□ -1.57
RAB40C-205ENST00000539661 LCE3BQ5TA77 95 aa5.21□□□□□ -1.58
RAB40C-205ENST00000539661 OBSCNQ5VST9 7968 aa5.18□□□□□ -1.58
RAB40C-205ENST00000539661 KRTAP4-9Q9BYQ8 210 aa5.11□□□□□ -1.59
RAB40C-205ENST00000539661 LCE3DQ9BYE3 92 aa5.08□□□□□ -1.6
RAB40C-205ENST00000539661 LCE3EQ5T5B0 92 aa5.06□□□□□ -1.6
RAB40C-205ENST00000539661 KRTAP5-9P26371 169 aa5.06□□□□□ -1.6
RAB40C-205ENST00000539661 KRTAP6-1Q3LI64 71 aa5.03□□□□□ -1.6
RAB40C-205ENST00000539661 LCE1AQ5T7P2 110 aa5.02□□□□□ -1.61
RAB40C-205ENST00000539661 KRTAP9-4Q9BYQ2 154 aa5.02□□□□□ -1.61
RAB40C-205ENST00000539661 KRTAP5-5Q701N2 237 aaPredicted RBP4.99□□□□□ -1.61
RAB40C-205ENST00000539661 PRM1P04553 51 aa4.95□□□□□ -1.62
RAB40C-205ENST00000539661 SPRR2EP22531 72 aa4.94□□□□□ -1.62
RAB40C-205ENST00000539661 SPRR2BP35325 72 aa4.94□□□□□ -1.62
RAB40C-205ENST00000539661 SPRR2AP35326 72 aa4.94□□□□□ -1.62
RAB40C-205ENST00000539661 KRTAP9-7A8MTY7 169 aa4.93□□□□□ -1.62
RAB40C-205ENST00000539661 KRTAP9-9Q9BYP9 154 aa4.91□□□□□ -1.62
RAB40C-205ENST00000539661 LCE4AQ5TA78 99 aa4.86□□□□□ -1.63
RAB40C-205ENST00000539661 KRTAP6-3Q3LI67 103 aa4.82□□□□□ -1.64
RAB40C-205ENST00000539661 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.81□□□□□ -1.64
RAB40C-205ENST00000539661 KRTAP6-2Q3LI66 62 aa4.72□□□□□ -1.65
RAB40C-205ENST00000539661 SPRR2DP22532 72 aa4.71□□□□□ -1.66
RAB40C-205ENST00000539661 NEBP20929 6669 aa4.54□□□□□ -1.68
RAB40C-205ENST00000539661 LCE1FQ5T754 118 aa4.5□□□□□ -1.69
RAB40C-205ENST00000539661 MT3P25713 68 aa4.5□□□□□ -1.69
RAB40C-205ENST00000539661 KRTAP2-2Q9BYT5 123 aa4.44□□□□□ -1.7
RAB40C-205ENST00000539661 KRTAP4-6Q9BYQ5 205 aa4.33□□□□□ -1.72
RAB40C-205ENST00000539661 MT4P47944 62 aa4.33□□□□□ -1.72
RAB40C-205ENST00000539661 KRTAP5-4Q6L8H1 288 aa4.31□□□□□ -1.72
RAB40C-205ENST00000539661 HMCN1Q96RW7 5635 aa4.23□□□□□ -1.73
RAB40C-205ENST00000539661 KRTAP4-12Q9BQ66 201 aa4.08□□□□□ -1.76
RAB40C-205ENST00000539661 LCE1DQ5T752 114 aa4.04□□□□□ -1.76
RAB40C-205ENST00000539661 KRTAP20-2Q3LI61 65 aa4.03□□□□□ -1.76
RAB40C-205ENST00000539661 KRTAP20-1Q3LI63 56 aa3.98□□□□□ -1.77
RAB40C-205ENST00000539661 KRTAP5-2Q701N4 177 aa3.97□□□□□ -1.77
RAB40C-205ENST00000539661 LCE1EQ5T753 118 aa3.96□□□□□ -1.78
RAB40C-205ENST00000539661 GPR98Q8WXG9 6306 aa3.86□□□□□ -1.79
RAB40C-205ENST00000539661 KRTAP5-3Q6L8H2 238 aa3.85□□□□□ -1.79
RAB40C-205ENST00000539661 MUC5ACP98088 5654 aa3.75□□□□□ -1.81
RAB40C-205ENST00000539661 KRTAP5-10Q6L8G5 202 aa3.68□□□□□ -1.82
RAB40C-205ENST00000539661 KRTAP4-11Q9BYQ6 195 aa3.67□□□□□ -1.82
RAB40C-205ENST00000539661 LCE1BQ5T7P3 118 aa3.63□□□□□ -1.83
RAB40C-205ENST00000539661 KRTAP5-1Q6L8H4 278 aa3.61□□□□□ -1.83
RAB40C-205ENST00000539661 LCE1CQ5T751 118 aa3.4□□□□□ -1.86
RAB40C-205ENST00000539661 KRTAP4-2Q9BYR5 136 aa3.39□□□□□ -1.87
RAB40C-205ENST00000539661 AHNAK2Q8IVF2 5795 aa3.38□□□□□ -1.87
RAB40C-205ENST00000539661 MUC5BQ9HC84 5762 aaPredicted RBP3.3□□□□□ -1.88
RAB40C-205ENST00000539661 KRTAP5-8O75690 187 aa3.27□□□□□ -1.89
RAB40C-205ENST00000539661 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.27□□□□□ -1.89
RAB40C-205ENST00000539661 KRTAP21-2Q3LI59 83 aa3.25□□□□□ -1.89
RAB40C-205ENST00000539661 KRTAP5-7Q6L8G8 165 aa3.24□□□□□ -1.89
RAB40C-205ENST00000539661 KRTAP21-1Q3LI58 79 aa3.21□□□□□ -1.9
RAB40C-205ENST00000539661 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
RAB40C-205ENST00000539661 KRTAP4-4Q9BYR3 166 aa3.09□□□□□ -1.91
RAB40C-205ENST00000539661 AHNAKQ09666 5890 aaKnown RBP3.06□□□□□ -1.92
RAB40C-205ENST00000539661 KRTAP5-11Q6L8G4 156 aa2.92□□□□□ -1.94
RAB40C-205ENST00000539661 PHGR1C9JFL3 82 aa2.51□□□□□ -2.01
RAB40C-205ENST00000539661 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 77 of 20,778 RNA–protein pairs in 12.5 ms