RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 KRTAP9-4Q9BYQ2 154 aa4.57□□□□□ -1.68
SFSWAP-208ENST00000539506 LCE3CQ5T5A8 94 aa4.55□□□□□ -1.68
SFSWAP-208ENST00000539506 KRTAP9-6A8MVA2 160 aa4.55□□□□□ -1.68
SFSWAP-208ENST00000539506 KRTAP4-12Q9BQ66 201 aa4.55□□□□□ -1.68
SFSWAP-208ENST00000539506 SSPOA2VEC9 5147 aa4.53□□□□□ -1.68
SFSWAP-208ENST00000539506 KRTAP19-7Q3SYF9 63 aa4.5□□□□□ -1.69
SFSWAP-208ENST00000539506 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.71
SFSWAP-208ENST00000539506 MT1EP04732 61 aa4.35□□□□□ -1.71
SFSWAP-208ENST00000539506 MT1LQ93083 61 aa4.34□□□□□ -1.71
SFSWAP-208ENST00000539506 FCGBPQ9Y6R7 5405 aaPredicted RBP4.32□□□□□ -1.72
SFSWAP-208ENST00000539506 LCE5AQ5TCM9 118 aa4.31□□□□□ -1.72
SFSWAP-208ENST00000539506 MUC12Q9UKN1 5478 aa4.31□□□□□ -1.72
SFSWAP-208ENST00000539506 KRTAP19-6Q3LI70 58 aa4.3□□□□□ -1.72
SFSWAP-208ENST00000539506 CRCT1Q9UGL9 99 aa4.3□□□□□ -1.72
SFSWAP-208ENST00000539506 LCE1DQ5T752 114 aa4.25□□□□□ -1.73
SFSWAP-208ENST00000539506 KRTAP4-3Q9BYR4 195 aa4.25□□□□□ -1.73
SFSWAP-208ENST00000539506 KRTAP19-4Q3LI73 84 aa4.24□□□□□ -1.73
SFSWAP-208ENST00000539506 KRTAP2-3P0C7H8 128 aa4.23□□□□□ -1.73
SFSWAP-208ENST00000539506 KRTAP2-4Q9BYR9 128 aa4.23□□□□□ -1.73
SFSWAP-208ENST00000539506 KRTAP2-1Q9BYU5 128 aa4.23□□□□□ -1.73
SFSWAP-208ENST00000539506 SYNE1Q8NF91 8797 aaKnown RBP4.2□□□□□ -1.74
SFSWAP-208ENST00000539506 OBSCNQ5VST9 7968 aa4.15□□□□□ -1.75
SFSWAP-208ENST00000539506 MT1GP13640 62 aa4.13□□□□□ -1.75
SFSWAP-208ENST00000539506 KRTAP4-2Q9BYR5 136 aa4.12□□□□□ -1.75
SFSWAP-208ENST00000539506 KRTAP4-9Q9BYQ8 210 aa4.11□□□□□ -1.75
SFSWAP-208ENST00000539506 MT1MQ8N339 61 aa4.06□□□□□ -1.76
SFSWAP-208ENST00000539506 KRTAP19-3Q7Z4W3 81 aa4.05□□□□□ -1.76
SFSWAP-208ENST00000539506 KRTAP12-4P60329 112 aa4.01□□□□□ -1.77
SFSWAP-208ENST00000539506 MACF1Q9UPN3 7388 aaKnown RBP4□□□□□ -1.77
SFSWAP-208ENST00000539506 KRTAP4-11Q9BYQ6 195 aa4□□□□□ -1.77
SFSWAP-208ENST00000539506 SYNE2Q8WXH0 6885 aaKnown RBP3.97□□□□□ -1.77
SFSWAP-208ENST00000539506 SPRR2FQ96RM1 72 aa3.93□□□□□ -1.78
SFSWAP-208ENST00000539506 KRTAP2-2Q9BYT5 123 aa3.92□□□□□ -1.78
SFSWAP-208ENST00000539506 MDN1Q9NU22 5596 aa3.89□□□□□ -1.79
SFSWAP-208ENST00000539506 LCE1FQ5T754 118 aa3.86□□□□□ -1.79
SFSWAP-208ENST00000539506 KRTAP6-3Q3LI67 103 aa3.86□□□□□ -1.79
SFSWAP-208ENST00000539506 KRTAP20-1Q3LI63 56 aa3.84□□□□□ -1.79
SFSWAP-208ENST00000539506 KRTAP5-9P26371 169 aa3.78□□□□□ -1.8
SFSWAP-208ENST00000539506 LCE1AQ5T7P2 110 aa3.75□□□□□ -1.81
SFSWAP-208ENST00000539506 KRTAP5-3Q6L8H2 238 aa3.73□□□□□ -1.81
SFSWAP-208ENST00000539506 KRTAP6-1Q3LI64 71 aa3.71□□□□□ -1.82
SFSWAP-208ENST00000539506 KRTAP5-5Q701N2 237 aaPredicted RBP3.62□□□□□ -1.83
SFSWAP-208ENST00000539506 MT1AP04731 61 aa3.61□□□□□ -1.83
SFSWAP-208ENST00000539506 LCE1EQ5T753 118 aa3.6□□□□□ -1.83
SFSWAP-208ENST00000539506 PRM1P04553 51 aa3.59□□□□□ -1.83
SFSWAP-208ENST00000539506 MUC5BQ9HC84 5762 aaPredicted RBP3.59□□□□□ -1.84
SFSWAP-208ENST00000539506 LCE3DQ9BYE3 92 aa3.58□□□□□ -1.84
SFSWAP-208ENST00000539506 NEBP20929 6669 aa3.58□□□□□ -1.84
SFSWAP-208ENST00000539506 SPRR2EP22531 72 aa3.57□□□□□ -1.84
SFSWAP-208ENST00000539506 SPRR2BP35325 72 aa3.57□□□□□ -1.84
SFSWAP-208ENST00000539506 SPRR2AP35326 72 aa3.57□□□□□ -1.84
SFSWAP-208ENST00000539506 LCE3EQ5T5B0 92 aa3.52□□□□□ -1.85
SFSWAP-208ENST00000539506 GPR98Q8WXG9 6306 aa3.51□□□□□ -1.85
SFSWAP-208ENST00000539506 KRTAP5-7Q6L8G8 165 aa3.48□□□□□ -1.85
SFSWAP-208ENST00000539506 SPRR2DP22532 72 aa3.41□□□□□ -1.86
SFSWAP-208ENST00000539506 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
SFSWAP-208ENST00000539506 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
SFSWAP-208ENST00000539506 MT3P25713 68 aa3.22□□□□□ -1.89
SFSWAP-208ENST00000539506 KRTAP5-4Q6L8H1 288 aa3.18□□□□□ -1.9
SFSWAP-208ENST00000539506 KRTAP5-10Q6L8G5 202 aa3.17□□□□□ -1.9
SFSWAP-208ENST00000539506 MT4P47944 62 aa3.05□□□□□ -1.92
SFSWAP-208ENST00000539506 AHNAK2Q8IVF2 5795 aa3.01□□□□□ -1.93
SFSWAP-208ENST00000539506 HMCN1Q96RW7 5635 aa3□□□□□ -1.93
SFSWAP-208ENST00000539506 KRTAP20-2Q3LI61 65 aa2.99□□□□□ -1.93
SFSWAP-208ENST00000539506 KRTAP5-2Q701N4 177 aa2.97□□□□□ -1.93
SFSWAP-208ENST00000539506 MUC5ACP98088 5654 aa2.85□□□□□ -1.95
SFSWAP-208ENST00000539506 MUC19Q7Z5P9 8384 aa2.84□□□□□ -1.95
SFSWAP-208ENST00000539506 KRTAP5-11Q6L8G4 156 aa2.76□□□□□ -1.97
SFSWAP-208ENST00000539506 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
SFSWAP-208ENST00000539506 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.67□□□□□ -1.98
SFSWAP-208ENST00000539506 KRTAP5-1Q6L8H4 278 aa2.56□□□□□ -2
SFSWAP-208ENST00000539506 LCE1CQ5T751 118 aa2.52□□□□□ -2.01
SFSWAP-208ENST00000539506 KRTAP5-8O75690 187 aa2.49□□□□□ -2.01
SFSWAP-208ENST00000539506 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
SFSWAP-208ENST00000539506 KRTAP21-2Q3LI59 83 aa2.4□□□□□ -2.02
SFSWAP-208ENST00000539506 KRTAP21-1Q3LI58 79 aa2.1□□□□□ -2.07
SFSWAP-208ENST00000539506 PHGR1C9JFL3 82 aa1.89□□□□□ -2.11
SFSWAP-208ENST00000539506 MUC16Q8WXI7 14507 aa1.23□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 179.3 ms