RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 HMCN2Q8NDA2 5059 aa4.22□□□□□ -1.73
USP3-203ENST00000538686 MUC2Q02817 5179 aa4.2□□□□□ -1.74
USP3-203ENST00000538686 KRTAP12-4P60329 112 aa4.17□□□□□ -1.74
USP3-203ENST00000538686 MT1HP80294 61 aa4.17□□□□□ -1.74
USP3-203ENST00000538686 UBR4Q5T4S7 5183 aa4.13□□□□□ -1.75
USP3-203ENST00000538686 KRTAP19-7Q3SYF9 63 aa3.98□□□□□ -1.77
USP3-203ENST00000538686 KRTAP9-3Q9BYQ3 159 aa3.98□□□□□ -1.77
USP3-203ENST00000538686 EPPK1P58107 5090 aaKnown RBP3.97□□□□□ -1.77
USP3-203ENST00000538686 FAT4Q6V0I7 4981 aa3.97□□□□□ -1.77
USP3-203ENST00000538686 MT1LQ93083 61 aa3.94□□□□□ -1.78
USP3-203ENST00000538686 MT1EP04732 61 aa3.91□□□□□ -1.78
USP3-203ENST00000538686 KRTAP2-2Q9BYT5 123 aa3.91□□□□□ -1.78
USP3-203ENST00000538686 LCE4AQ5TA78 99 aa3.85□□□□□ -1.79
USP3-203ENST00000538686 KRTAP6-3Q3LI67 103 aa3.84□□□□□ -1.79
USP3-203ENST00000538686 MT1AP04731 61 aa3.77□□□□□ -1.81
USP3-203ENST00000538686 RNF213Q63HN8 5207 aa3.77□□□□□ -1.81
USP3-203ENST00000538686 PRM1P04553 51 aa3.77□□□□□ -1.81
USP3-203ENST00000538686 KRTAP9-7A8MTY7 169 aa3.73□□□□□ -1.81
USP3-203ENST00000538686 LCE1AQ5T7P2 110 aa3.72□□□□□ -1.81
USP3-203ENST00000538686 KMT2DO14686 5537 aa3.71□□□□□ -1.82
USP3-203ENST00000538686 LCE3EQ5T5B0 92 aa3.69□□□□□ -1.82
USP3-203ENST00000538686 MT1GP13640 62 aa3.67□□□□□ -1.82
USP3-203ENST00000538686 KRTAP5-5Q701N2 237 aaPredicted RBP3.66□□□□□ -1.82
USP3-203ENST00000538686 LCE3DQ9BYE3 92 aa3.65□□□□□ -1.83
USP3-203ENST00000538686 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.64□□□□□ -1.83
USP3-203ENST00000538686 LCE5AQ5TCM9 118 aa3.59□□□□□ -1.83
USP3-203ENST00000538686 KRTAP4-3Q9BYR4 195 aa3.55□□□□□ -1.84
USP3-203ENST00000538686 MT1MQ8N339 61 aa3.54□□□□□ -1.84
USP3-203ENST00000538686 CRCT1Q9UGL9 99 aa3.54□□□□□ -1.84
USP3-203ENST00000538686 SYNE1Q8NF91 8797 aaKnown RBP3.47□□□□□ -1.85
USP3-203ENST00000538686 KRTAP19-3Q7Z4W3 81 aa3.46□□□□□ -1.86
USP3-203ENST00000538686 KRTAP6-2Q3LI66 62 aa3.44□□□□□ -1.86
USP3-203ENST00000538686 LCE1EQ5T753 118 aa3.42□□□□□ -1.86
USP3-203ENST00000538686 SPRR2FQ96RM1 72 aa3.42□□□□□ -1.86
USP3-203ENST00000538686 KRTAP5-9P26371 169 aa3.39□□□□□ -1.87
USP3-203ENST00000538686 USH2AO75445 5202 aa3.32□□□□□ -1.88
USP3-203ENST00000538686 KRTAP6-1Q3LI64 71 aa3.31□□□□□ -1.88
USP3-203ENST00000538686 SSPOA2VEC9 5147 aa3.27□□□□□ -1.89
USP3-203ENST00000538686 SPRR2AP35326 72 aa3.23□□□□□ -1.89
USP3-203ENST00000538686 KRTAP19-6Q3LI70 58 aa3.15□□□□□ -1.91
USP3-203ENST00000538686 KRTAP5-4Q6L8H1 288 aa3.12□□□□□ -1.91
USP3-203ENST00000538686 SPRR2EP22531 72 aa3.12□□□□□ -1.91
USP3-203ENST00000538686 SPRR2BP35325 72 aa3.1□□□□□ -1.91
USP3-203ENST00000538686 FCGBPQ9Y6R7 5405 aaPredicted RBP3.08□□□□□ -1.92
USP3-203ENST00000538686 SPRR2DP22532 72 aa3.04□□□□□ -1.92
USP3-203ENST00000538686 MUC12Q9UKN1 5478 aa3.04□□□□□ -1.92
USP3-203ENST00000538686 MT3P25713 68 aa2.97□□□□□ -1.93
USP3-203ENST00000538686 LCE1FQ5T754 118 aa2.96□□□□□ -1.94
USP3-203ENST00000538686 KRTAP5-1Q6L8H4 278 aa2.94□□□□□ -1.94
USP3-203ENST00000538686 KRTAP4-4Q9BYR3 166 aa2.94□□□□□ -1.94
USP3-203ENST00000538686 HMCN1Q96RW7 5635 aa2.94□□□□□ -1.94
USP3-203ENST00000538686 DSTQ03001 7570 aaKnown RBP2.91□□□□□ -1.94
USP3-203ENST00000538686 OBSCNQ5VST9 7968 aa2.9□□□□□ -1.94
USP3-203ENST00000538686 KRTAP5-11Q6L8G4 156 aa2.88□□□□□ -1.95
USP3-203ENST00000538686 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
USP3-203ENST00000538686 SYNE2Q8WXH0 6885 aaKnown RBP2.61□□□□□ -1.99
USP3-203ENST00000538686 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
USP3-203ENST00000538686 KRTAP5-10Q6L8G5 202 aa2.57□□□□□ -2
USP3-203ENST00000538686 MDN1Q9NU22 5596 aa2.54□□□□□ -2
USP3-203ENST00000538686 KRTAP21-1Q3LI58 79 aa2.5□□□□□ -2.01
USP3-203ENST00000538686 MUC5ACP98088 5654 aa2.49□□□□□ -2.01
USP3-203ENST00000538686 FSIP2Q5CZC0 6907 aa2.44□□□□□ -2.02
USP3-203ENST00000538686 MACF1Q9UPN3 7388 aaKnown RBP2.34□□□□□ -2.03
USP3-203ENST00000538686 LCE1CQ5T751 118 aa2.33□□□□□ -2.04
USP3-203ENST00000538686 LCE1BQ5T7P3 118 aa2.33□□□□□ -2.04
USP3-203ENST00000538686 KRTAP20-2Q3LI61 65 aa2.17□□□□□ -2.06
USP3-203ENST00000538686 KRTAP21-2Q3LI59 83 aa2.13□□□□□ -2.07
USP3-203ENST00000538686 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
USP3-203ENST00000538686 MT4P47944 62 aa2.03□□□□□ -2.08
USP3-203ENST00000538686 KRTAP20-1Q3LI63 56 aa1.88□□□□□ -2.11
USP3-203ENST00000538686 MUC5BQ9HC84 5762 aaPredicted RBP1.85□□□□□ -2.11
USP3-203ENST00000538686 NEBP20929 6669 aa1.81□□□□□ -2.12
USP3-203ENST00000538686 KRTAP5-7Q6L8G8 165 aa1.68□□□□□ -2.14
USP3-203ENST00000538686 GPR98Q8WXG9 6306 aa1.62□□□□□ -2.15
USP3-203ENST00000538686 PHGR1C9JFL3 82 aa1.51□□□□□ -2.17
USP3-203ENST00000538686 AHNAKQ09666 5890 aaKnown RBP1.39□□□□□ -2.19
USP3-203ENST00000538686 MUC16Q8WXI7 14507 aa1.26□□□□□ -2.21
USP3-203ENST00000538686 AHNAK2Q8IVF2 5795 aa1.24□□□□□ -2.21
Retrieved 78 of 20,778 RNA–protein pairs in 25.8 ms