RNA–Protein interactions for RNA: ENST00000534049.5

ITGB1-219, Transcript of integrin subunit beta 1, humanhuman

TSL 4

Gene ITGB1, Length 562 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-219ENST00000534049 RNF213Q63HN8 5207 aa2□□□□□ -2.09
ITGB1-219ENST00000534049 M0QZ58 72 aa1.99□□□□□ -2.09
ITGB1-219ENST00000534049 SMR3BP02814 79 aaPredicted RBP1.99□□□□□ -2.09
ITGB1-219ENST00000534049 A0A0D9SG42 100 aa1.98□□□□□ -2.09
ITGB1-219ENST00000534049 MT1HL1P0DM35 61 aa1.96□□□□□ -2.1
ITGB1-219ENST00000534049 KRTAP12-1P59990 96 aa1.96□□□□□ -2.1
ITGB1-219ENST00000534049 MUC19Q7Z5P9 8384 aa1.96□□□□□ -2.1
ITGB1-219ENST00000534049 LPAP08519 4548 aa1.95□□□□□ -2.1
ITGB1-219ENST00000534049 KRTAP13-4Q3LI77 160 aa1.94□□□□□ -2.1
ITGB1-219ENST00000534049 RPS29P62273 56 aaKnown RBP1.92□□□□□ -2.1
ITGB1-219ENST00000534049 MUC2Q02817 5179 aa1.92□□□□□ -2.1
ITGB1-219ENST00000534049 FAT4Q6V0I7 4981 aa1.9□□□□□ -2.11
ITGB1-219ENST00000534049 MUC17Q685J3 4493 aa1.89□□□□□ -2.11
ITGB1-219ENST00000534049 KRTAP13-2Q52LG2 175 aa1.88□□□□□ -2.11
ITGB1-219ENST00000534049 KRTAP12-4P60329 112 aa1.78□□□□□ -2.12
ITGB1-219ENST00000534049 TNP1P09430 55 aa1.77□□□□□ -2.13
ITGB1-219ENST00000534049 KRTAP21-2Q3LI59 83 aa1.77□□□□□ -2.13
ITGB1-219ENST00000534049 FSIP2Q5CZC0 6907 aa1.74□□□□□ -2.13
ITGB1-219ENST00000534049 FLGP20930 4061 aaPredicted RBP1.74□□□□□ -2.13
ITGB1-219ENST00000534049 C9orf92A6NGG3 77 aa1.73□□□□□ -2.13
ITGB1-219ENST00000534049 KRTAP12-3P60328 96 aa1.73□□□□□ -2.13
ITGB1-219ENST00000534049 KRTAP4-1Q9BYQ7 146 aa1.73□□□□□ -2.13
ITGB1-219ENST00000534049 KRTAP19-2Q3LHN2 52 aa1.71□□□□□ -2.14
ITGB1-219ENST00000534049 HMCN1Q96RW7 5635 aa1.68□□□□□ -2.14
ITGB1-219ENST00000534049 MT1HP80294 61 aa1.67□□□□□ -2.14
ITGB1-219ENST00000534049 USH2AO75445 5202 aa1.67□□□□□ -2.14
ITGB1-219ENST00000534049 SSPOA2VEC9 5147 aa1.66□□□□□ -2.14
ITGB1-219ENST00000534049 CRCT1Q9UGL9 99 aa1.65□□□□□ -2.15
ITGB1-219ENST00000534049 FCGBPQ9Y6R7 5405 aaPredicted RBP1.61□□□□□ -2.15
ITGB1-219ENST00000534049 SYNE2Q8WXH0 6885 aaKnown RBP1.57□□□□□ -2.16
ITGB1-219ENST00000534049 KRTAP6-3Q3LI67 103 aa1.57□□□□□ -2.16
ITGB1-219ENST00000534049 MACF1Q9UPN3 7388 aaKnown RBP1.56□□□□□ -2.16
ITGB1-219ENST00000534049 KRTAP8-1Q8IUC2 63 aa1.56□□□□□ -2.16
ITGB1-219ENST00000534049 M0R2T5 61 aa1.54□□□□□ -2.16
ITGB1-219ENST00000534049 MT2AP02795 61 aa1.54□□□□□ -2.16
ITGB1-219ENST00000534049 MT1FP04733 61 aa1.54□□□□□ -2.16
ITGB1-219ENST00000534049 NEBP20929 6669 aa1.54□□□□□ -2.16
ITGB1-219ENST00000534049 MUC12Q9UKN1 5478 aa1.5□□□□□ -2.17
ITGB1-219ENST00000534049 KRTAP2-3P0C7H8 128 aa1.49□□□□□ -2.17
ITGB1-219ENST00000534049 KRTAP2-4Q9BYR9 128 aa1.49□□□□□ -2.17
ITGB1-219ENST00000534049 KRTAP2-1Q9BYU5 128 aa1.49□□□□□ -2.17
ITGB1-219ENST00000534049 KRTAP19-6Q3LI70 58 aa1.47□□□□□ -2.17
ITGB1-219ENST00000534049 MDN1Q9NU22 5596 aa1.47□□□□□ -2.17
ITGB1-219ENST00000534049 KMT2DO14686 5537 aa1.44□□□□□ -2.18
ITGB1-219ENST00000534049 MT1BP07438 61 aa1.4□□□□□ -2.19
ITGB1-219ENST00000534049 KRTAP19-8Q3LI54 63 aa1.37□□□□□ -2.19
ITGB1-219ENST00000534049 SPRR2GQ9BYE4 73 aa1.37□□□□□ -2.19
ITGB1-219ENST00000534049 KRTAP20-1Q3LI63 56 aa1.34□□□□□ -2.19
ITGB1-219ENST00000534049 GPR98Q8WXG9 6306 aa1.32□□□□□ -2.2
ITGB1-219ENST00000534049 MT1XP80297 61 aa1.3□□□□□ -2.2
ITGB1-219ENST00000534049 KRTAP19-5Q3LI72 72 aa1.29□□□□□ -2.2
ITGB1-219ENST00000534049 SPRR2FQ96RM1 72 aa1.28□□□□□ -2.2
ITGB1-219ENST00000534049 SPRR2EP22531 72 aa1.27□□□□□ -2.21
ITGB1-219ENST00000534049 SPRR2BP35325 72 aa1.27□□□□□ -2.21
ITGB1-219ENST00000534049 SPRR2AP35326 72 aa1.27□□□□□ -2.21
ITGB1-219ENST00000534049 MT1AP04731 61 aa1.23□□□□□ -2.21
ITGB1-219ENST00000534049 SPRR2DP22532 72 aa1.23□□□□□ -2.21
ITGB1-219ENST00000534049 PRM1P04553 51 aa1.21□□□□□ -2.22
ITGB1-219ENST00000534049 DSTQ03001 7570 aaKnown RBP1.2□□□□□ -2.22
ITGB1-219ENST00000534049 AHNAK2Q8IVF2 5795 aa1.2□□□□□ -2.22
ITGB1-219ENST00000534049 MT1EP04732 61 aa1.19□□□□□ -2.22
ITGB1-219ENST00000534049 KRTAP19-7Q3SYF9 63 aa1.17□□□□□ -2.22
ITGB1-219ENST00000534049 MT1LQ93083 61 aa1.16□□□□□ -2.22
ITGB1-219ENST00000534049 KRTAP19-3Q7Z4W3 81 aa1.14□□□□□ -2.23
ITGB1-219ENST00000534049 KRTAP5-10Q6L8G5 202 aa1.09□□□□□ -2.23
ITGB1-219ENST00000534049 MT1MQ8N339 61 aa1.09□□□□□ -2.23
ITGB1-219ENST00000534049 MT4P47944 62 aa1.08□□□□□ -2.24
ITGB1-219ENST00000534049 SYNE1Q8NF91 8797 aaKnown RBP1.08□□□□□ -2.24
ITGB1-219ENST00000534049 MUC5BQ9HC84 5762 aaPredicted RBP1.07□□□□□ -2.24
ITGB1-219ENST00000534049 MT1GP13640 62 aa1.06□□□□□ -2.24
ITGB1-219ENST00000534049 KRTAP6-2Q3LI66 62 aa1.06□□□□□ -2.24
ITGB1-219ENST00000534049 KRTAP20-2Q3LI61 65 aa1.02□□□□□ -2.25
ITGB1-219ENST00000534049 AHNAKQ09666 5890 aaKnown RBP1.01□□□□□ -2.25
ITGB1-219ENST00000534049 MUC5ACP98088 5654 aa0.99□□□□□ -2.25
ITGB1-219ENST00000534049 KRTAP6-1Q3LI64 71 aa0.92□□□□□ -2.26
ITGB1-219ENST00000534049 KRTAP21-1Q3LI58 79 aa0.88□□□□□ -2.27
ITGB1-219ENST00000534049 MUC16Q8WXI7 14507 aa0.8□□□□□ -2.28
ITGB1-219ENST00000534049 PHGR1C9JFL3 82 aa0.61□□□□□ -2.31
Retrieved 78 of 20,778 RNA–protein pairs in 56 ms