RNA–Protein interactions for RNA: ENST00000533244.5

CCS-208, Transcript of copper chaperone for superoxide dismutase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCS, Length 1,430 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCS-208ENST00000533244 MT1LQ93083 61 aa7.31□□□□□ -1.24
CCS-208ENST00000533244 K7ERS5 55 aa7.3□□□□□ -1.24
CCS-208ENST00000533244 DSTQ03001 7570 aaKnown RBP7.25□□□□□ -1.25
CCS-208ENST00000533244 PP632Q6XCG6 107 aa7.25□□□□□ -1.25
CCS-208ENST00000533244 KRTAP25-1Q3LHN0 102 aa7.24□□□□□ -1.25
CCS-208ENST00000533244 MT1MQ8N339 61 aa7.23□□□□□ -1.25
CCS-208ENST00000533244 A6NED7 52 aa7.22□□□□□ -1.25
CCS-208ENST00000533244 KRTAP12-3P60328 96 aa7.18□□□□□ -1.26
CCS-208ENST00000533244 KRTAP4-3Q9BYR4 195 aa7.03□□□□□ -1.28
CCS-208ENST00000533244 CDC42SE1Q9NRR8 79 aa7.03□□□□□ -1.28
CCS-208ENST00000533244 KRTAP23-1A1A580 65 aa7.01□□□□□ -1.29
CCS-208ENST00000533244 KRTAP4-7Q9BYR0 210 aa6.94□□□□□ -1.3
CCS-208ENST00000533244 BRK1Q8WUW1 75 aa6.89□□□□□ -1.31
CCS-208ENST00000533244 KRTAP4-9Q9BYQ8 210 aa6.89□□□□□ -1.31
CCS-208ENST00000533244 ROMO1P60602 79 aa6.88□□□□□ -1.31
CCS-208ENST00000533244 LCE4AQ5TA78 99 aa6.85□□□□□ -1.31
CCS-208ENST00000533244 KRTAP19-4Q3LI73 84 aa6.82□□□□□ -1.32
CCS-208ENST00000533244 KRTAP5-4Q6L8H1 288 aa6.81□□□□□ -1.32
CCS-208ENST00000533244 LCE1DQ5T752 114 aa6.79□□□□□ -1.32
CCS-208ENST00000533244 KRTAP15-1Q3LI76 137 aa6.77□□□□□ -1.33
CCS-208ENST00000533244 MT4P47944 62 aa6.7□□□□□ -1.34
CCS-208ENST00000533244 HMCN1Q96RW7 5635 aa6.7□□□□□ -1.34
CCS-208ENST00000533244 SVIPQ8NHG7 77 aa6.68□□□□□ -1.34
CCS-208ENST00000533244 KRTAP5-5Q701N2 237 aaPredicted RBP6.65□□□□□ -1.35
CCS-208ENST00000533244 LCE3CQ5T5A8 94 aa6.63□□□□□ -1.35
CCS-208ENST00000533244 PRO0628Q9UI54 55 aa6.63□□□□□ -1.35
CCS-208ENST00000533244 KRTAP4-6Q9BYQ5 205 aa6.58□□□□□ -1.36
CCS-208ENST00000533244 LOC100996750A0A140TA64 210 aa6.56□□□□□ -1.36
CCS-208ENST00000533244 GPR98Q8WXG9 6306 aa6.53□□□□□ -1.36
CCS-208ENST00000533244 PMAIP1Q13794 54 aa6.5□□□□□ -1.37
CCS-208ENST00000533244 SPRR5A0A1B0GTR4 108 aa6.39□□□□□ -1.39
CCS-208ENST00000533244 KRTAP20-2Q3LI61 65 aa6.38□□□□□ -1.39
CCS-208ENST00000533244 AHNAK2Q8IVF2 5795 aa6.36□□□□□ -1.39
CCS-208ENST00000533244 KRTAP12-4P60329 112 aa6.35□□□□□ -1.39
CCS-208ENST00000533244 SYNE1Q8NF91 8797 aaKnown RBP6.32□□□□□ -1.4
CCS-208ENST00000533244 KRTAP9-6A8MVA2 160 aa6.28□□□□□ -1.4
CCS-208ENST00000533244 MT1AP04731 61 aa6.23□□□□□ -1.41
CCS-208ENST00000533244 KRTAP5-10Q6L8G5 202 aa6.23□□□□□ -1.41
CCS-208ENST00000533244 KRTAP5-3Q6L8H2 238 aa6.21□□□□□ -1.42
CCS-208ENST00000533244 KRTAP6-1Q3LI64 71 aa6.16□□□□□ -1.42
CCS-208ENST00000533244 PRAC1Q96KF2 57 aa6.16□□□□□ -1.42
CCS-208ENST00000533244 KTN1-AS1Q86SY8 53 aa6.12□□□□□ -1.43
CCS-208ENST00000533244 KRTAP5-2Q701N4 177 aa6□□□□□ -1.45
CCS-208ENST00000533244 KRTAP9-4Q9BYQ2 154 aa5.99□□□□□ -1.45
CCS-208ENST00000533244 KRTAP5-7Q6L8G8 165 aa5.95□□□□□ -1.46
CCS-208ENST00000533244 KRTAP6-2Q3LI66 62 aa5.83□□□□□ -1.48
CCS-208ENST00000533244 KRTAP4-11Q9BYQ6 195 aa5.76□□□□□ -1.49
CCS-208ENST00000533244 MT3P25713 68 aa5.66□□□□□ -1.5
CCS-208ENST00000533244 KRTAP5-8O75690 187 aa5.58□□□□□ -1.52
CCS-208ENST00000533244 OBSCNQ5VST9 7968 aa5.55□□□□□ -1.52
CCS-208ENST00000533244 KRTAP5-1Q6L8H4 278 aa5.33□□□□□ -1.56
CCS-208ENST00000533244 MUC5ACP98088 5654 aa5.24□□□□□ -1.57
CCS-208ENST00000533244 MUC5BQ9HC84 5762 aaPredicted RBP5.23□□□□□ -1.57
CCS-208ENST00000533244 KRTAP9-9Q9BYP9 154 aa5.21□□□□□ -1.58
CCS-208ENST00000533244 LCE1EQ5T753 118 aa5.18□□□□□ -1.58
CCS-208ENST00000533244 AHNAKQ09666 5890 aaKnown RBP5.16□□□□□ -1.58
CCS-208ENST00000533244 LUZP6Q538Z0 58 aa4.99□□□□□ -1.61
CCS-208ENST00000533244 KRTAP4-2Q9BYR5 136 aa4.89□□□□□ -1.63
CCS-208ENST00000533244 LCE1CQ5T751 118 aa4.81□□□□□ -1.64
CCS-208ENST00000533244 LCE1BQ5T7P3 118 aa4.81□□□□□ -1.64
CCS-208ENST00000533244 LCE3DQ9BYE3 92 aa4.8□□□□□ -1.64
CCS-208ENST00000533244 NDUFAF8A1L188 74 aa4.72□□□□□ -1.65
CCS-208ENST00000533244 H3BS24 57 aa4.57□□□□□ -1.68
CCS-208ENST00000533244 LCE3EQ5T5B0 92 aa4.55□□□□□ -1.68
CCS-208ENST00000533244 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.43□□□□□ -1.7
CCS-208ENST00000533244 A0A0A0MQY5 61 aa4.38□□□□□ -1.71
CCS-208ENST00000533244 KRTAP5-11Q6L8G4 156 aa4.35□□□□□ -1.71
CCS-208ENST00000533244 KRTAP4-12Q9BQ66 201 aa4.29□□□□□ -1.72
CCS-208ENST00000533244 LCE1FQ5T754 118 aa4.17□□□□□ -1.74
CCS-208ENST00000533244 KRTAP21-2Q3LI59 83 aa4.08□□□□□ -1.76
CCS-208ENST00000533244 INE1O15225 51 aa4.06□□□□□ -1.76
CCS-208ENST00000533244 PHGR1C9JFL3 82 aa3.74□□□□□ -1.81
CCS-208ENST00000533244 KRTAP4-4Q9BYR3 166 aa3.65□□□□□ -1.83
CCS-208ENST00000533244 PRM1P04553 51 aa3.53□□□□□ -1.85
CCS-208ENST00000533244 MUC19Q7Z5P9 8384 aa3.4□□□□□ -1.87
CCS-208ENST00000533244 KRTAP21-1Q3LI58 79 aa2.72□□□□□ -1.97
CCS-208ENST00000533244 MUC16Q8WXI7 14507 aa2.39□□□□□ -2.03
Retrieved 77 of 20,778 RNA–protein pairs in 7.2 ms