RNA–Protein interactions for RNA: ENST00000531579.5

NXF1-210, Transcript of nuclear RNA export factor 1, human

TSL 4

Gene NXF1, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-210	ENST00000531579	LCE3B	Q5TA77	95 aa		5.46	□□□□□ -1.54
NXF1-210	ENST00000531579	LCE3A	Q5TA76	89 aa		5.43	□□□□□ -1.54
NXF1-210	ENST00000531579	MT1G	P13640	62 aa		5.41	□□□□□ -1.54
NXF1-210	ENST00000531579		A6NED7	52 aa		5.38	□□□□□ -1.55
NXF1-210	ENST00000531579	PP632	Q6XCG6	107 aa		5.38	□□□□□ -1.55
NXF1-210	ENST00000531579	KRTAP25-1	Q3LHN0	102 aa		5.37	□□□□□ -1.55
NXF1-210	ENST00000531579	MT1L	Q93083	61 aa		5.31	□□□□□ -1.56
NXF1-210	ENST00000531579	DST	Q03001	7570 aa	Known RBP	5.29	□□□□□ -1.56
NXF1-210	ENST00000531579	KRTAP12-3	P60328	96 aa		5.27	□□□□□ -1.57
NXF1-210	ENST00000531579	MT1M	Q8N339	61 aa		5.25	□□□□□ -1.57
NXF1-210	ENST00000531579	KRTAP23-1	A1A580	65 aa		5.22	□□□□□ -1.57
NXF1-210	ENST00000531579	CDC42SE1	Q9NRR8	79 aa		5.19	□□□□□ -1.58
NXF1-210	ENST00000531579	KRTAP19-4	Q3LI73	84 aa		5.12	□□□□□ -1.59
NXF1-210	ENST00000531579	ROMO1	P60602	79 aa		5.11	□□□□□ -1.59
NXF1-210	ENST00000531579	KRTAP4-3	Q9BYR4	195 aa		5.08	□□□□□ -1.6
NXF1-210	ENST00000531579	KRTAP4-9	Q9BYQ8	210 aa		5.06	□□□□□ -1.6
NXF1-210	ENST00000531579	LCE4A	Q5TA78	99 aa		5.02	□□□□□ -1.61
NXF1-210	ENST00000531579	KRTAP4-7	Q9BYR0	210 aa		5.02	□□□□□ -1.61
NXF1-210	ENST00000531579	KRTAP15-1	Q3LI76	137 aa		5	□□□□□ -1.61
NXF1-210	ENST00000531579	KRTAP5-4	Q6L8H1	288 aa		4.94	□□□□□ -1.62
NXF1-210	ENST00000531579	LCE1D	Q5T752	114 aa		4.92	□□□□□ -1.62
NXF1-210	ENST00000531579	MT4	P47944	62 aa		4.88	□□□□□ -1.63
NXF1-210	ENST00000531579	LCE3C	Q5T5A8	94 aa		4.88	□□□□□ -1.63
NXF1-210	ENST00000531579	HMCN1	Q96RW7	5635 aa		4.81	□□□□□ -1.64
NXF1-210	ENST00000531579	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.8	□□□□□ -1.64
NXF1-210	ENST00000531579	AHNAK2	Q8IVF2	5795 aa		4.78	□□□□□ -1.64
NXF1-210	ENST00000531579	BRK1	Q8WUW1	75 aa		4.77	□□□□□ -1.65
NXF1-210	ENST00000531579	KRTAP4-6	Q9BYQ5	205 aa		4.77	□□□□□ -1.65
NXF1-210	ENST00000531579	LOC100996750	A0A140TA64	210 aa		4.75	□□□□□ -1.65
NXF1-210	ENST00000531579	KRTAP5-10	Q6L8G5	202 aa		4.71	□□□□□ -1.66
NXF1-210	ENST00000531579	KRTAP12-4	P60329	112 aa		4.7	□□□□□ -1.66
NXF1-210	ENST00000531579	SPRR5	A0A1B0GTR4	108 aa		4.68	□□□□□ -1.66
NXF1-210	ENST00000531579	KRTAP20-2	Q3LI61	65 aa		4.63	□□□□□ -1.67
NXF1-210	ENST00000531579	KRTAP5-7	Q6L8G8	165 aa		4.58	□□□□□ -1.68
NXF1-210	ENST00000531579	SVIP	Q8NHG7	77 aa		4.58	□□□□□ -1.68
NXF1-210	ENST00000531579	SYNE1	Q8NF91	8797 aa	Known RBP	4.56	□□□□□ -1.68
NXF1-210	ENST00000531579	MT1A	P04731	61 aa		4.54	□□□□□ -1.68
NXF1-210	ENST00000531579	KRTAP9-6	A8MVA2	160 aa		4.53	□□□□□ -1.68
NXF1-210	ENST00000531579	PMAIP1	Q13794	54 aa		4.53	□□□□□ -1.68
NXF1-210	ENST00000531579	KRTAP5-3	Q6L8H2	238 aa		4.49	□□□□□ -1.69
NXF1-210	ENST00000531579	KRTAP6-1	Q3LI64	71 aa		4.47	□□□□□ -1.69
NXF1-210	ENST00000531579	KRTAP9-4	Q9BYQ2	154 aa		4.4	□□□□□ -1.71
NXF1-210	ENST00000531579	KRTAP5-2	Q701N4	177 aa		4.34	□□□□□ -1.71
NXF1-210	ENST00000531579	PRO0628	Q9UI54	55 aa		4.31	□□□□□ -1.72
NXF1-210	ENST00000531579	KRTAP6-2	Q3LI66	62 aa		4.25	□□□□□ -1.73
NXF1-210	ENST00000531579	PRAC1	Q96KF2	57 aa		4.24	□□□□□ -1.73
NXF1-210	ENST00000531579	KRTAP4-11	Q9BYQ6	195 aa		4.21	□□□□□ -1.74
NXF1-210	ENST00000531579	MT3	P25713	68 aa		4.18	□□□□□ -1.74
NXF1-210	ENST00000531579	AHNAK	Q09666	5890 aa	Known RBP	4.1	□□□□□ -1.75
NXF1-210	ENST00000531579	KTN1-AS1	Q86SY8	53 aa		4.07	□□□□□ -1.76
NXF1-210	ENST00000531579	OBSCN	Q5VST9	7968 aa		4.05	□□□□□ -1.76
NXF1-210	ENST00000531579	MUC5AC	P98088	5654 aa		4.05	□□□□□ -1.76
NXF1-210	ENST00000531579	KRTAP5-8	O75690	187 aa		4.04	□□□□□ -1.76
NXF1-210	ENST00000531579	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.01	□□□□□ -1.77
NXF1-210	ENST00000531579	KRTAP5-1	Q6L8H4	278 aa		3.86	□□□□□ -1.79
NXF1-210	ENST00000531579	KRTAP9-9	Q9BYP9	154 aa		3.85	□□□□□ -1.79
NXF1-210	ENST00000531579	LCE1E	Q5T753	118 aa		3.82	□□□□□ -1.8
NXF1-210	ENST00000531579	LUZP6	Q538Z0	58 aa		3.69	□□□□□ -1.82
NXF1-210	ENST00000531579	LCE3D	Q9BYE3	92 aa		3.57	□□□□□ -1.84
NXF1-210	ENST00000531579	LCE1C	Q5T751	118 aa		3.53	□□□□□ -1.84
NXF1-210	ENST00000531579	LCE1B	Q5T7P3	118 aa		3.53	□□□□□ -1.84
NXF1-210	ENST00000531579		H3BS24	57 aa		3.52	□□□□□ -1.85
NXF1-210	ENST00000531579	KRTAP4-2	Q9BYR5	136 aa		3.52	□□□□□ -1.85
NXF1-210	ENST00000531579	LCE3E	Q5T5B0	92 aa		3.38	□□□□□ -1.87
NXF1-210	ENST00000531579		A0A0A0MQY5	61 aa		3.34	□□□□□ -1.87
NXF1-210	ENST00000531579	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.23	□□□□□ -1.89
NXF1-210	ENST00000531579	KRTAP5-11	Q6L8G4	156 aa		3.16	□□□□□ -1.9
NXF1-210	ENST00000531579	KRTAP4-12	Q9BQ66	201 aa		3.11	□□□□□ -1.91
NXF1-210	ENST00000531579	LCE1F	Q5T754	118 aa		3.09	□□□□□ -1.91
NXF1-210	ENST00000531579	NDUFAF8	A1L188	74 aa		3.01	□□□□□ -1.93
NXF1-210	ENST00000531579	KRTAP21-2	Q3LI59	83 aa		2.96	□□□□□ -1.94
NXF1-210	ENST00000531579	PHGR1	C9JFL3	82 aa		2.81	□□□□□ -1.96
NXF1-210	ENST00000531579	KRTAP4-4	Q9BYR3	166 aa		2.64	□□□□□ -1.99
NXF1-210	ENST00000531579	PRM1	P04553	51 aa		2.59	□□□□□ -1.99
NXF1-210	ENST00000531579	INE1	O15225	51 aa		2.51	□□□□□ -2.01
NXF1-210	ENST00000531579	MUC19	Q7Z5P9	8384 aa		2.46	□□□□□ -2.02
NXF1-210	ENST00000531579	KRTAP21-1	Q3LI58	79 aa		2.09	□□□□□ -2.07
NXF1-210	ENST00000531579	MUC16	Q8WXI7	14507 aa		1.75	□□□□□ -2.13

Retrieved 78 of 20,778 RNA–protein pairs in 52.5 ms