RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 MT1GP13640 62 aa4.12□□□□□ -1.75
VPS28-214ENST00000531032 LCE1DQ5T752 114 aa4.12□□□□□ -1.75
VPS28-214ENST00000531032 KRTAP19-5Q3LI72 72 aa4.11□□□□□ -1.75
VPS28-214ENST00000531032 PSPHP1O15172 72 aa4.1□□□□□ -1.75
VPS28-214ENST00000531032 PP632Q6XCG6 107 aa4.09□□□□□ -1.75
VPS28-214ENST00000531032 LCE4AQ5TA78 99 aa4.07□□□□□ -1.76
VPS28-214ENST00000531032 UQCR11O14957 56 aa4.06□□□□□ -1.76
VPS28-214ENST00000531032 MT1MQ8N339 61 aa4.05□□□□□ -1.76
VPS28-214ENST00000531032 HMCN1Q96RW7 5635 aa4.05□□□□□ -1.76
VPS28-214ENST00000531032 MT4P47944 62 aa4.04□□□□□ -1.76
VPS28-214ENST00000531032 TNP1P09430 55 aa4.03□□□□□ -1.76
VPS28-214ENST00000531032 MT1LQ93083 61 aa4.03□□□□□ -1.76
VPS28-214ENST00000531032 KTN1-AS1Q86SY8 53 aa4.02□□□□□ -1.77
VPS28-214ENST00000531032 MIR22HGQ0VDD5 57 aa4.01□□□□□ -1.77
VPS28-214ENST00000531032 KRTAP5-4Q6L8H1 288 aa3.99□□□□□ -1.77
VPS28-214ENST00000531032 C10orf95Q9H7T3 257 aa3.98□□□□□ -1.77
VPS28-214ENST00000531032 LCE3AQ5TA76 89 aa3.96□□□□□ -1.78
VPS28-214ENST00000531032 KRTAP4-3Q9BYR4 195 aa3.96□□□□□ -1.78
VPS28-214ENST00000531032 KRTAP5-10Q6L8G5 202 aa3.94□□□□□ -1.78
VPS28-214ENST00000531032 AHNAK2Q8IVF2 5795 aa3.93□□□□□ -1.78
VPS28-214ENST00000531032 A6NED7 52 aa3.93□□□□□ -1.78
VPS28-214ENST00000531032 KRTAP4-6Q9BYQ5 205 aa3.92□□□□□ -1.78
VPS28-214ENST00000531032 CDC42SE1Q9NRR8 79 aa3.91□□□□□ -1.78
VPS28-214ENST00000531032 K7ERS5 55 aa3.89□□□□□ -1.79
VPS28-214ENST00000531032 KRTAP12-3P60328 96 aa3.82□□□□□ -1.8
VPS28-214ENST00000531032 KRTAP5-7Q6L8G8 165 aa3.81□□□□□ -1.8
VPS28-214ENST00000531032 KRTAP4-7Q9BYR0 210 aa3.81□□□□□ -1.8
VPS28-214ENST00000531032 KRTAP25-1Q3LHN0 102 aa3.8□□□□□ -1.8
VPS28-214ENST00000531032 KRTAP5-3Q6L8H2 238 aa3.8□□□□□ -1.8
VPS28-214ENST00000531032 KRTAP20-2Q3LI61 65 aa3.76□□□□□ -1.81
VPS28-214ENST00000531032 KRTAP5-5Q701N2 237 aaPredicted RBP3.76□□□□□ -1.81
VPS28-214ENST00000531032 SPRR5A0A1B0GTR4 108 aa3.73□□□□□ -1.81
VPS28-214ENST00000531032 H3BS24 57 aa3.73□□□□□ -1.81
VPS28-214ENST00000531032 KRTAP12-4P60329 112 aa3.68□□□□□ -1.82
VPS28-214ENST00000531032 ROMO1P60602 79 aa3.67□□□□□ -1.82
VPS28-214ENST00000531032 LOC100996750A0A140TA64 210 aa3.62□□□□□ -1.83
VPS28-214ENST00000531032 KRTAP23-1A1A580 65 aa3.61□□□□□ -1.83
VPS28-214ENST00000531032 PRAC1Q96KF2 57 aa3.6□□□□□ -1.83
VPS28-214ENST00000531032 KRTAP19-4Q3LI73 84 aa3.57□□□□□ -1.84
VPS28-214ENST00000531032 KRTAP15-1Q3LI76 137 aa3.57□□□□□ -1.84
VPS28-214ENST00000531032 SYNE1Q8NF91 8797 aaKnown RBP3.55□□□□□ -1.84
VPS28-214ENST00000531032 LCE3CQ5T5A8 94 aa3.49□□□□□ -1.85
VPS28-214ENST00000531032 KRTAP4-11Q9BYQ6 195 aa3.48□□□□□ -1.85
VPS28-214ENST00000531032 KRTAP5-2Q701N4 177 aa3.47□□□□□ -1.85
VPS28-214ENST00000531032 MT1AP04731 61 aa3.42□□□□□ -1.86
VPS28-214ENST00000531032 KRTAP6-1Q3LI64 71 aa3.41□□□□□ -1.86
VPS28-214ENST00000531032 KRTAP5-8O75690 187 aa3.37□□□□□ -1.87
VPS28-214ENST00000531032 KRTAP9-4Q9BYQ2 154 aa3.33□□□□□ -1.88
VPS28-214ENST00000531032 MUC5ACP98088 5654 aa3.3□□□□□ -1.88
VPS28-214ENST00000531032 KRTAP9-6A8MVA2 160 aa3.29□□□□□ -1.88
VPS28-214ENST00000531032 KRTAP6-2Q3LI66 62 aa3.29□□□□□ -1.88
VPS28-214ENST00000531032 MUC5BQ9HC84 5762 aaPredicted RBP3.27□□□□□ -1.89
VPS28-214ENST00000531032 A0A0A0MQY5 61 aa3.26□□□□□ -1.89
VPS28-214ENST00000531032 AHNAKQ09666 5890 aaKnown RBP3.26□□□□□ -1.89
VPS28-214ENST00000531032 OBSCNQ5VST9 7968 aa3.26□□□□□ -1.89
VPS28-214ENST00000531032 KRTAP9-9Q9BYP9 154 aa3.21□□□□□ -1.9
VPS28-214ENST00000531032 NDUFAF8A1L188 74 aa3.19□□□□□ -1.9
VPS28-214ENST00000531032 KRTAP5-1Q6L8H4 278 aa3.14□□□□□ -1.91
VPS28-214ENST00000531032 MT3P25713 68 aa3.13□□□□□ -1.91
VPS28-214ENST00000531032 LUZP6Q538Z0 58 aa3.08□□□□□ -1.92
VPS28-214ENST00000531032 LCE1EQ5T753 118 aa2.94□□□□□ -1.94
VPS28-214ENST00000531032 KRTAP4-2Q9BYR5 136 aa2.79□□□□□ -1.96
VPS28-214ENST00000531032 INE1O15225 51 aa2.76□□□□□ -1.97
VPS28-214ENST00000531032 LCE1BQ5T7P3 118 aa2.75□□□□□ -1.97
VPS28-214ENST00000531032 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
VPS28-214ENST00000531032 KRTAP4-12Q9BQ66 201 aa2.56□□□□□ -2
VPS28-214ENST00000531032 LCE3DQ9BYE3 92 aa2.54□□□□□ -2
VPS28-214ENST00000531032 KRTAP5-11Q6L8G4 156 aa2.49□□□□□ -2.01
VPS28-214ENST00000531032 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.47□□□□□ -2.01
VPS28-214ENST00000531032 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
VPS28-214ENST00000531032 LCE3EQ5T5B0 92 aa2.4□□□□□ -2.03
VPS28-214ENST00000531032 PHGR1C9JFL3 82 aa2.29□□□□□ -2.04
VPS28-214ENST00000531032 KRTAP21-2Q3LI59 83 aa2.26□□□□□ -2.05
VPS28-214ENST00000531032 KRTAP4-4Q9BYR3 166 aa2.07□□□□□ -2.08
VPS28-214ENST00000531032 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
VPS28-214ENST00000531032 PRM1P04553 51 aa1.91□□□□□ -2.1
VPS28-214ENST00000531032 KRTAP21-1Q3LI58 79 aa1.75□□□□□ -2.13
VPS28-214ENST00000531032 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 64 ms