RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 H1FX-AS1Q4G0G2 97 aa2.04□□□□□ -2.08
CD44-226ENST00000527889 S4R3F8 94 aa2.03□□□□□ -2.08
CD44-226ENST00000527889 KRTAP2-3P0C7H8 128 aa2.02□□□□□ -2.09
CD44-226ENST00000527889 KRTAP19-2Q3LHN2 52 aa2.02□□□□□ -2.09
CD44-226ENST00000527889 KRTAP2-4Q9BYR9 128 aa2.02□□□□□ -2.09
CD44-226ENST00000527889 PLAC4Q8WY50 150 aa2□□□□□ -2.09
CD44-226ENST00000527889 KRTAP5-1Q6L8H4 278 aa1.98□□□□□ -2.09
CD44-226ENST00000527889 CRIPTQ9P021 101 aa1.98□□□□□ -2.09
CD44-226ENST00000527889 AHNAK2Q8IVF2 5795 aa1.98□□□□□ -2.09
CD44-226ENST00000527889 PP632Q6XCG6 107 aa1.97□□□□□ -2.09
CD44-226ENST00000527889 LCE3EQ5T5B0 92 aa1.96□□□□□ -2.1
CD44-226ENST00000527889 MDN1Q9NU22 5596 aa1.96□□□□□ -2.1
CD44-226ENST00000527889 MT1HP80294 61 aa1.94□□□□□ -2.1
CD44-226ENST00000527889 M0R2T5 61 aa1.93□□□□□ -2.1
CD44-226ENST00000527889 SPRR5A0A1B0GTR4 108 aa1.92□□□□□ -2.1
CD44-226ENST00000527889 KRTAP2-1Q9BYU5 128 aa1.91□□□□□ -2.1
CD44-226ENST00000527889 H0YAA0 97 aa1.9□□□□□ -2.11
CD44-226ENST00000527889 KRTAP12-2P59991 146 aa1.9□□□□□ -2.11
CD44-226ENST00000527889 KRTAP13-4Q3LI77 160 aa1.9□□□□□ -2.11
CD44-226ENST00000527889 KRTAP5-4Q6L8H1 288 aa1.9□□□□□ -2.11
CD44-226ENST00000527889 KRTAP4-4Q9BYR3 166 aa1.89□□□□□ -2.11
CD44-226ENST00000527889 A0A0D9SG42 100 aa1.88□□□□□ -2.11
CD44-226ENST00000527889 KRTAP5-9P26371 169 aa1.88□□□□□ -2.11
CD44-226ENST00000527889 M0QZ58 72 aa1.87□□□□□ -2.11
CD44-226ENST00000527889 MT2AP02795 61 aa1.87□□□□□ -2.11
CD44-226ENST00000527889 MT1FP04733 61 aa1.86□□□□□ -2.11
CD44-226ENST00000527889 KRTAP10-10P60014 251 aa1.86□□□□□ -2.11
CD44-226ENST00000527889 KRTAP5-7Q6L8G8 165 aa1.82□□□□□ -2.12
CD44-226ENST00000527889 KRTAP12-1P59990 96 aa1.81□□□□□ -2.12
CD44-226ENST00000527889 KRTAP5-10Q6L8G5 202 aa1.81□□□□□ -2.12
CD44-226ENST00000527889 SPRR2GQ9BYE4 73 aa1.8□□□□□ -2.12
CD44-226ENST00000527889 AHNAKQ09666 5890 aaKnown RBP1.8□□□□□ -2.12
CD44-226ENST00000527889 OBSCNQ5VST9 7968 aa1.79□□□□□ -2.12
CD44-226ENST00000527889 C10orf95Q9H7T3 257 aa1.78□□□□□ -2.12
CD44-226ENST00000527889 HMCN1Q96RW7 5635 aa1.78□□□□□ -2.12
CD44-226ENST00000527889 DSTQ03001 7570 aaKnown RBP1.77□□□□□ -2.13
CD44-226ENST00000527889 KRTAP19-8Q3LI54 63 aa1.77□□□□□ -2.13
CD44-226ENST00000527889 LCE3AQ5TA76 89 aa1.77□□□□□ -2.13
CD44-226ENST00000527889 MT1BP07438 61 aa1.76□□□□□ -2.13
CD44-226ENST00000527889 KRTAP19-6Q3LI70 58 aa1.75□□□□□ -2.13
CD44-226ENST00000527889 LCE3DQ9BYE3 92 aa1.71□□□□□ -2.14
CD44-226ENST00000527889 MUC5BQ9HC84 5762 aaPredicted RBP1.7□□□□□ -2.14
CD44-226ENST00000527889 MT1XP80297 61 aa1.7□□□□□ -2.14
CD44-226ENST00000527889 KRTAP4-3Q9BYR4 195 aa1.69□□□□□ -2.14
CD44-226ENST00000527889 SPRR2EP22531 72 aa1.67□□□□□ -2.14
CD44-226ENST00000527889 SPRR2BP35325 72 aa1.67□□□□□ -2.14
CD44-226ENST00000527889 SPRR2AP35326 72 aa1.67□□□□□ -2.14
CD44-226ENST00000527889 KRTAP5-5Q701N2 237 aaPredicted RBP1.66□□□□□ -2.14
CD44-226ENST00000527889 TNP1P09430 55 aa1.65□□□□□ -2.15
CD44-226ENST00000527889 MUC5ACP98088 5654 aa1.62□□□□□ -2.15
CD44-226ENST00000527889 SPRR2DP22532 72 aa1.61□□□□□ -2.15
CD44-226ENST00000527889 KRTAP5-2Q701N4 177 aa1.6□□□□□ -2.15
CD44-226ENST00000527889 KRTAP19-5Q3LI72 72 aa1.54□□□□□ -2.16
CD44-226ENST00000527889 KRTAP8-1Q8IUC2 63 aa1.54□□□□□ -2.16
CD44-226ENST00000527889 KRTAP12-3P60328 96 aa1.53□□□□□ -2.16
CD44-226ENST00000527889 SPRR2FQ96RM1 72 aa1.53□□□□□ -2.16
CD44-226ENST00000527889 LCE1CQ5T751 118 aa1.52□□□□□ -2.17
CD44-226ENST00000527889 LCE1BQ5T7P3 118 aa1.52□□□□□ -2.17
CD44-226ENST00000527889 KRTAP19-7Q3SYF9 63 aa1.51□□□□□ -2.17
CD44-226ENST00000527889 MT4P47944 62 aa1.5□□□□□ -2.17
CD44-226ENST00000527889 MT1EP04732 61 aa1.49□□□□□ -2.17
CD44-226ENST00000527889 MT1LQ93083 61 aa1.46□□□□□ -2.18
CD44-226ENST00000527889 KRTAP12-4P60329 112 aa1.42□□□□□ -2.18
CD44-226ENST00000527889 KRTAP19-3Q7Z4W3 81 aa1.42□□□□□ -2.18
CD44-226ENST00000527889 MT1GP13640 62 aa1.4□□□□□ -2.19
CD44-226ENST00000527889 MT1MQ8N339 61 aa1.4□□□□□ -2.19
CD44-226ENST00000527889 KRTAP5-8O75690 187 aa1.35□□□□□ -2.19
CD44-226ENST00000527889 MUC19Q7Z5P9 8384 aa1.29□□□□□ -2.2
CD44-226ENST00000527889 SYNE1Q8NF91 8797 aaKnown RBP1.27□□□□□ -2.21
CD44-226ENST00000527889 KRTAP6-1Q3LI64 71 aa1.24□□□□□ -2.21
CD44-226ENST00000527889 MT1AP04731 61 aa1.23□□□□□ -2.21
CD44-226ENST00000527889 KRTAP20-2Q3LI61 65 aa1.22□□□□□ -2.21
CD44-226ENST00000527889 KRTAP6-2Q3LI66 62 aa1.14□□□□□ -2.23
CD44-226ENST00000527889 KRTAP21-2Q3LI59 83 aa1.1□□□□□ -2.23
CD44-226ENST00000527889 PHGR1C9JFL3 82 aa1.09□□□□□ -2.23
CD44-226ENST00000527889 PRM1P04553 51 aa1.05□□□□□ -2.24
CD44-226ENST00000527889 KRTAP21-1Q3LI58 79 aa0.81□□□□□ -2.28
CD44-226ENST00000527889 MUC16Q8WXI7 14507 aa0.57□□□□□ -2.32
Retrieved 78 of 20,778 RNA–protein pairs in 105 ms