RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 MT1EP04732 61 aa5.23□□□□□ -1.57
NUP54-217ENST00000514987 SSPOA2VEC9 5147 aa5.21□□□□□ -1.58
NUP54-217ENST00000514987 INE1O15225 51 aa5.2□□□□□ -1.58
NUP54-217ENST00000514987 MT1LQ93083 61 aa5.2□□□□□ -1.58
NUP54-217ENST00000514987 LCE1DQ5T752 114 aa5.18□□□□□ -1.58
NUP54-217ENST00000514987 KMT2DO14686 5537 aa5.12□□□□□ -1.59
NUP54-217ENST00000514987 KRTAP9-6A8MVA2 160 aa5.11□□□□□ -1.59
NUP54-217ENST00000514987 KRTAP4-9Q9BYQ8 210 aa5.08□□□□□ -1.6
NUP54-217ENST00000514987 KRTAP4-2Q9BYR5 136 aa5.05□□□□□ -1.6
NUP54-217ENST00000514987 KRTAP2-3P0C7H8 128 aa4.99□□□□□ -1.61
NUP54-217ENST00000514987 KRTAP2-4Q9BYR9 128 aa4.99□□□□□ -1.61
NUP54-217ENST00000514987 KRTAP2-1Q9BYU5 128 aa4.99□□□□□ -1.61
NUP54-217ENST00000514987 CRCT1Q9UGL9 99 aa4.98□□□□□ -1.61
NUP54-217ENST00000514987 MT1GP13640 62 aa4.96□□□□□ -1.62
NUP54-217ENST00000514987 KRTAP19-3Q7Z4W3 81 aa4.95□□□□□ -1.62
NUP54-217ENST00000514987 KRTAP9-7A8MTY7 169 aa4.94□□□□□ -1.62
NUP54-217ENST00000514987 MT1MQ8N339 61 aa4.9□□□□□ -1.63
NUP54-217ENST00000514987 KRTAP4-11Q9BYQ6 195 aa4.84□□□□□ -1.63
NUP54-217ENST00000514987 FCGBPQ9Y6R7 5405 aaPredicted RBP4.82□□□□□ -1.64
NUP54-217ENST00000514987 FSIP2Q5CZC0 6907 aa4.81□□□□□ -1.64
NUP54-217ENST00000514987 LCE5AQ5TCM9 118 aa4.78□□□□□ -1.64
NUP54-217ENST00000514987 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
NUP54-217ENST00000514987 KRTAP4-3Q9BYR4 195 aa4.78□□□□□ -1.64
NUP54-217ENST00000514987 KRTAP5-3Q6L8H2 238 aa4.74□□□□□ -1.65
NUP54-217ENST00000514987 LCE4AQ5TA78 99 aa4.65□□□□□ -1.66
NUP54-217ENST00000514987 MUC12Q9UKN1 5478 aa4.6□□□□□ -1.67
NUP54-217ENST00000514987 KRTAP5-9P26371 169 aa4.59□□□□□ -1.67
NUP54-217ENST00000514987 MACF1Q9UPN3 7388 aaKnown RBP4.55□□□□□ -1.68
NUP54-217ENST00000514987 LCE1AQ5T7P2 110 aa4.52□□□□□ -1.69
NUP54-217ENST00000514987 MT1AP04731 61 aa4.43□□□□□ -1.7
NUP54-217ENST00000514987 SPRR2EP22531 72 aa4.43□□□□□ -1.7
NUP54-217ENST00000514987 SPRR2BP35325 72 aa4.43□□□□□ -1.7
NUP54-217ENST00000514987 SPRR2AP35326 72 aa4.43□□□□□ -1.7
NUP54-217ENST00000514987 KRTAP6-1Q3LI64 71 aa4.36□□□□□ -1.71
NUP54-217ENST00000514987 KRTAP5-5Q701N2 237 aaPredicted RBP4.36□□□□□ -1.71
NUP54-217ENST00000514987 KRTAP12-4P60329 112 aa4.32□□□□□ -1.72
NUP54-217ENST00000514987 SYNE2Q8WXH0 6885 aaKnown RBP4.31□□□□□ -1.72
NUP54-217ENST00000514987 DSTQ03001 7570 aaKnown RBP4.3□□□□□ -1.72
NUP54-217ENST00000514987 KRTAP6-3Q3LI67 103 aa4.3□□□□□ -1.72
NUP54-217ENST00000514987 SPRR2DP22532 72 aa4.26□□□□□ -1.73
NUP54-217ENST00000514987 KRTAP20-1Q3LI63 56 aa4.25□□□□□ -1.73
NUP54-217ENST00000514987 NEBP20929 6669 aa4.23□□□□□ -1.73
NUP54-217ENST00000514987 MDN1Q9NU22 5596 aa4.21□□□□□ -1.74
NUP54-217ENST00000514987 LCE3DQ9BYE3 92 aa4.17□□□□□ -1.74
NUP54-217ENST00000514987 GPR98Q8WXG9 6306 aa4.13□□□□□ -1.75
NUP54-217ENST00000514987 LCE3EQ5T5B0 92 aa4.11□□□□□ -1.75
NUP54-217ENST00000514987 MT3P25713 68 aa4.01□□□□□ -1.77
NUP54-217ENST00000514987 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
NUP54-217ENST00000514987 KRTAP6-2Q3LI66 62 aa3.94□□□□□ -1.78
NUP54-217ENST00000514987 KRTAP5-4Q6L8H1 288 aa3.94□□□□□ -1.78
NUP54-217ENST00000514987 PRM1P04553 51 aa3.78□□□□□ -1.8
NUP54-217ENST00000514987 KRTAP2-2Q9BYT5 123 aa3.68□□□□□ -1.82
NUP54-217ENST00000514987 KRTAP20-2Q3LI61 65 aa3.67□□□□□ -1.82
NUP54-217ENST00000514987 MT4P47944 62 aa3.66□□□□□ -1.82
NUP54-217ENST00000514987 KRTAP5-2Q701N4 177 aa3.66□□□□□ -1.82
NUP54-217ENST00000514987 OBSCNQ5VST9 7968 aa3.53□□□□□ -1.84
NUP54-217ENST00000514987 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.47□□□□□ -1.85
NUP54-217ENST00000514987 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.86
NUP54-217ENST00000514987 HMCN1Q96RW7 5635 aa3.39□□□□□ -1.87
NUP54-217ENST00000514987 KRTAP5-7Q6L8G8 165 aa3.38□□□□□ -1.87
NUP54-217ENST00000514987 LCE1EQ5T753 118 aa3.37□□□□□ -1.87
NUP54-217ENST00000514987 KRTAP5-10Q6L8G5 202 aa3.34□□□□□ -1.88
NUP54-217ENST00000514987 KRTAP5-11Q6L8G4 156 aa3.27□□□□□ -1.89
NUP54-217ENST00000514987 AHNAKQ09666 5890 aaKnown RBP3.18□□□□□ -1.9
NUP54-217ENST00000514987 MUC5ACP98088 5654 aa3.16□□□□□ -1.9
NUP54-217ENST00000514987 LCE1CQ5T751 118 aa3.14□□□□□ -1.91
NUP54-217ENST00000514987 LCE1BQ5T7P3 118 aa3.14□□□□□ -1.91
NUP54-217ENST00000514987 MUC5BQ9HC84 5762 aaPredicted RBP3.1□□□□□ -1.91
NUP54-217ENST00000514987 KRTAP5-1Q6L8H4 278 aa3.08□□□□□ -1.92
NUP54-217ENST00000514987 KRTAP5-8O75690 187 aa2.96□□□□□ -1.94
NUP54-217ENST00000514987 KRTAP4-4Q9BYR3 166 aa2.9□□□□□ -1.95
NUP54-217ENST00000514987 LCE1FQ5T754 118 aa2.87□□□□□ -1.95
NUP54-217ENST00000514987 KRTAP21-2Q3LI59 83 aa2.84□□□□□ -1.95
NUP54-217ENST00000514987 KRTAP21-1Q3LI58 79 aa2.41□□□□□ -2.02
NUP54-217ENST00000514987 PHGR1C9JFL3 82 aa2.32□□□□□ -2.04
NUP54-217ENST00000514987 MUC19Q7Z5P9 8384 aa2.09□□□□□ -2.07
NUP54-217ENST00000514987 MUC16Q8WXI7 14507 aa1.54□□□□□ -2.16
Retrieved 77 of 20,778 RNA–protein pairs in 129.9 ms