RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 KRTAP5-9P26371 169 aa5.76□□□□□ -1.49
NUP54-213ENST00000513352 BRK1Q8WUW1 75 aa5.73□□□□□ -1.49
NUP54-213ENST00000513352 KRTAP15-1Q3LI76 137 aa5.7□□□□□ -1.5
NUP54-213ENST00000513352 KRTAP25-1Q3LHN0 102 aa5.68□□□□□ -1.5
NUP54-213ENST00000513352 LCE3AQ5TA76 89 aa5.66□□□□□ -1.5
NUP54-213ENST00000513352 ROMO1P60602 79 aa5.64□□□□□ -1.51
NUP54-213ENST00000513352 SPRR2EP22531 72 aa5.61□□□□□ -1.51
NUP54-213ENST00000513352 SPRR2BP35325 72 aa5.61□□□□□ -1.51
NUP54-213ENST00000513352 SPRR2AP35326 72 aa5.61□□□□□ -1.51
NUP54-213ENST00000513352 KRTAP19-5Q3LI72 72 aa5.58□□□□□ -1.52
NUP54-213ENST00000513352 MUC12Q9UKN1 5478 aa5.58□□□□□ -1.52
NUP54-213ENST00000513352 KRTAP19-7Q3SYF9 63 aa5.56□□□□□ -1.52
NUP54-213ENST00000513352 A0A0A0MQY5 61 aa5.53□□□□□ -1.52
NUP54-213ENST00000513352 LCE1AQ5T7P2 110 aa5.53□□□□□ -1.52
NUP54-213ENST00000513352 MT1EP04732 61 aa5.52□□□□□ -1.53
NUP54-213ENST00000513352 MDN1Q9NU22 5596 aa5.5□□□□□ -1.53
NUP54-213ENST00000513352 NEBP20929 6669 aa5.48□□□□□ -1.53
NUP54-213ENST00000513352 KRTAP12-3P60328 96 aa5.43□□□□□ -1.54
NUP54-213ENST00000513352 SPRR2DP22532 72 aa5.41□□□□□ -1.54
NUP54-213ENST00000513352 KRTAP19-3Q7Z4W3 81 aa5.4□□□□□ -1.54
NUP54-213ENST00000513352 PMAIP1Q13794 54 aa5.38□□□□□ -1.55
NUP54-213ENST00000513352 PP632Q6XCG6 107 aa5.37□□□□□ -1.55
NUP54-213ENST00000513352 MT1LQ93083 61 aa5.35□□□□□ -1.55
NUP54-213ENST00000513352 KRTAP20-1Q3LI63 56 aa5.33□□□□□ -1.56
NUP54-213ENST00000513352 PRO0628Q9UI54 55 aa5.31□□□□□ -1.56
NUP54-213ENST00000513352 MT1GP13640 62 aa5.3□□□□□ -1.56
NUP54-213ENST00000513352 KRTAP2-3P0C7H8 128 aa5.26□□□□□ -1.57
NUP54-213ENST00000513352 KRTAP2-4Q9BYR9 128 aa5.26□□□□□ -1.57
NUP54-213ENST00000513352 MT1MQ8N339 61 aa5.23□□□□□ -1.57
NUP54-213ENST00000513352 KRTAP4-3Q9BYR4 195 aa5.12□□□□□ -1.59
NUP54-213ENST00000513352 KRTAP2-2Q9BYT5 123 aa5.12□□□□□ -1.59
NUP54-213ENST00000513352 KRTAP2-1Q9BYU5 128 aa5.12□□□□□ -1.59
NUP54-213ENST00000513352 PRAC1Q96KF2 57 aa5.1□□□□□ -1.59
NUP54-213ENST00000513352 LCE3CQ5T5A8 94 aa5.04□□□□□ -1.6
NUP54-213ENST00000513352 KTN1-AS1Q86SY8 53 aa5□□□□□ -1.61
NUP54-213ENST00000513352 DSTQ03001 7570 aaKnown RBP4.98□□□□□ -1.61
NUP54-213ENST00000513352 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.66
NUP54-213ENST00000513352 MT4P47944 62 aa4.71□□□□□ -1.66
NUP54-213ENST00000513352 KRTAP5-4Q6L8H1 288 aa4.71□□□□□ -1.66
NUP54-213ENST00000513352 KRTAP5-5Q701N2 237 aaPredicted RBP4.71□□□□□ -1.66
NUP54-213ENST00000513352 MT1AP04731 61 aa4.56□□□□□ -1.68
NUP54-213ENST00000513352 KRTAP12-4P60329 112 aa4.56□□□□□ -1.68
NUP54-213ENST00000513352 SPRR5A0A1B0GTR4 108 aa4.52□□□□□ -1.69
NUP54-213ENST00000513352 HMCN1Q96RW7 5635 aa4.51□□□□□ -1.69
NUP54-213ENST00000513352 KRTAP6-1Q3LI64 71 aa4.51□□□□□ -1.69
NUP54-213ENST00000513352 MT3P25713 68 aa4.46□□□□□ -1.7
NUP54-213ENST00000513352 KRTAP20-2Q3LI61 65 aa4.46□□□□□ -1.7
NUP54-213ENST00000513352 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.43□□□□□ -1.7
NUP54-213ENST00000513352 SYNE1Q8NF91 8797 aaKnown RBP4.37□□□□□ -1.71
NUP54-213ENST00000513352 NDUFAF8A1L188 74 aa4.31□□□□□ -1.72
NUP54-213ENST00000513352 LUZP6Q538Z0 58 aa4.26□□□□□ -1.73
NUP54-213ENST00000513352 KRTAP6-2Q3LI66 62 aa4.24□□□□□ -1.73
NUP54-213ENST00000513352 AHNAK2Q8IVF2 5795 aa4.22□□□□□ -1.73
NUP54-213ENST00000513352 KRTAP5-2Q701N4 177 aa4.19□□□□□ -1.74
NUP54-213ENST00000513352 KRTAP5-11Q6L8G4 156 aa4.18□□□□□ -1.74
NUP54-213ENST00000513352 GPR98Q8WXG9 6306 aa4.12□□□□□ -1.75
NUP54-213ENST00000513352 KRTAP5-10Q6L8G5 202 aa4.1□□□□□ -1.75
NUP54-213ENST00000513352 LCE1FQ5T754 118 aa4.09□□□□□ -1.75
NUP54-213ENST00000513352 KRTAP5-7Q6L8G8 165 aa3.88□□□□□ -1.79
NUP54-213ENST00000513352 LCE1EQ5T753 118 aa3.81□□□□□ -1.8
NUP54-213ENST00000513352 KRTAP5-1Q6L8H4 278 aa3.81□□□□□ -1.8
NUP54-213ENST00000513352 OBSCNQ5VST9 7968 aa3.8□□□□□ -1.8
NUP54-213ENST00000513352 KRTAP5-8O75690 187 aa3.8□□□□□ -1.8
NUP54-213ENST00000513352 LCE3DQ9BYE3 92 aa3.72□□□□□ -1.81
NUP54-213ENST00000513352 KRTAP4-4Q9BYR3 166 aa3.7□□□□□ -1.82
NUP54-213ENST00000513352 LCE3EQ5T5B0 92 aa3.56□□□□□ -1.84
NUP54-213ENST00000513352 LCE1BQ5T7P3 118 aa3.52□□□□□ -1.85
NUP54-213ENST00000513352 MUC5ACP98088 5654 aa3.52□□□□□ -1.85
NUP54-213ENST00000513352 LCE1CQ5T751 118 aa3.42□□□□□ -1.86
NUP54-213ENST00000513352 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
NUP54-213ENST00000513352 AHNAKQ09666 5890 aaKnown RBP3.31□□□□□ -1.88
NUP54-213ENST00000513352 INE1O15225 51 aa3.1□□□□□ -1.91
NUP54-213ENST00000513352 PRM1P04553 51 aa2.93□□□□□ -1.94
NUP54-213ENST00000513352 KRTAP21-2Q3LI59 83 aa2.92□□□□□ -1.94
NUP54-213ENST00000513352 PHGR1C9JFL3 82 aa2.63□□□□□ -1.99
NUP54-213ENST00000513352 MUC19Q7Z5P9 8384 aa2.29□□□□□ -2.04
NUP54-213ENST00000513352 KRTAP21-1Q3LI58 79 aa1.81□□□□□ -2.12
NUP54-213ENST00000513352 MUC16Q8WXI7 14507 aa1.69□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 133.7 ms