RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	KRTAP25-1	Q3LHN0	102 aa		5.37	□□□□□ -1.55
MATR3-238	ENST00000512107	SPRR2D	P22532	72 aa		5.35	□□□□□ -1.55
MATR3-238	ENST00000512107	BRK1	Q8WUW1	75 aa		5.35	□□□□□ -1.55
MATR3-238	ENST00000512107	ROMO1	P60602	79 aa		5.34	□□□□□ -1.55
MATR3-238	ENST00000512107	LOC100996750	A0A140TA64	210 aa		5.31	□□□□□ -1.56
MATR3-238	ENST00000512107	KRTAP4-6	Q9BYQ5	205 aa		5.31	□□□□□ -1.56
MATR3-238	ENST00000512107	LCE3B	Q5TA77	95 aa		5.24	□□□□□ -1.57
MATR3-238	ENST00000512107	KRTAP19-3	Q7Z4W3	81 aa		5.23	□□□□□ -1.57
MATR3-238	ENST00000512107	LCE5A	Q5TCM9	118 aa		5.22	□□□□□ -1.57
MATR3-238	ENST00000512107	MT1L	Q93083	61 aa		5.22	□□□□□ -1.57
MATR3-238	ENST00000512107	KRTAP12-3	P60328	96 aa		5.21	□□□□□ -1.58
MATR3-238	ENST00000512107	KRTAP23-1	A1A580	65 aa		5.17	□□□□□ -1.58
MATR3-238	ENST00000512107	DST	Q03001	7570 aa	Known RBP	5.12	□□□□□ -1.59
MATR3-238	ENST00000512107	MT1G	P13640	62 aa		5.11	□□□□□ -1.59
MATR3-238	ENST00000512107	MT1M	Q8N339	61 aa		5.11	□□□□□ -1.59
MATR3-238	ENST00000512107	KRTAP4-7	Q9BYR0	210 aa		5.09	□□□□□ -1.59
MATR3-238	ENST00000512107	KRTAP4-3	Q9BYR4	195 aa		5.08	□□□□□ -1.6
MATR3-238	ENST00000512107	KRTAP4-9	Q9BYQ8	210 aa		5.05	□□□□□ -1.6
MATR3-238	ENST00000512107	PMAIP1	Q13794	54 aa		5.02	□□□□□ -1.61
MATR3-238	ENST00000512107	PP632	Q6XCG6	107 aa		5.01	□□□□□ -1.61
MATR3-238	ENST00000512107	KRTAP15-1	Q3LI76	137 aa		4.99	□□□□□ -1.61
MATR3-238	ENST00000512107	PRO0628	Q9UI54	55 aa		4.97	□□□□□ -1.61
MATR3-238	ENST00000512107	PRAC1	Q96KF2	57 aa		4.91	□□□□□ -1.62
MATR3-238	ENST00000512107	KRTAP5-10	Q6L8G5	202 aa		4.88	□□□□□ -1.63
MATR3-238	ENST00000512107	AHNAK2	Q8IVF2	5795 aa		4.86	□□□□□ -1.63
MATR3-238	ENST00000512107	HMCN1	Q96RW7	5635 aa		4.86	□□□□□ -1.63
MATR3-238	ENST00000512107	SPRR5	A0A1B0GTR4	108 aa		4.86	□□□□□ -1.63
MATR3-238	ENST00000512107	LCE3C	Q5T5A8	94 aa		4.85	□□□□□ -1.63
MATR3-238	ENST00000512107	LCE1D	Q5T752	114 aa		4.84	□□□□□ -1.63
MATR3-238	ENST00000512107	KRTAP5-7	Q6L8G8	165 aa		4.82	□□□□□ -1.64
MATR3-238	ENST00000512107	KRTAP19-4	Q3LI73	84 aa		4.77	□□□□□ -1.65
MATR3-238	ENST00000512107	MT4	P47944	62 aa		4.73	□□□□□ -1.65
MATR3-238	ENST00000512107	KRTAP9-6	A8MVA2	160 aa		4.71	□□□□□ -1.66
MATR3-238	ENST00000512107	KRTAP4-12	Q9BQ66	201 aa		4.7	□□□□□ -1.66
MATR3-238	ENST00000512107	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.67	□□□□□ -1.66
MATR3-238	ENST00000512107	KTN1-AS1	Q86SY8	53 aa		4.67	□□□□□ -1.66
MATR3-238	ENST00000512107	LCE4A	Q5TA78	99 aa		4.66	□□□□□ -1.66
MATR3-238	ENST00000512107	KRTAP5-4	Q6L8H1	288 aa		4.65	□□□□□ -1.67
MATR3-238	ENST00000512107	KRTAP5-3	Q6L8H2	238 aa		4.6	□□□□□ -1.67
MATR3-238	ENST00000512107	KRTAP9-9	Q9BYP9	154 aa		4.55	□□□□□ -1.68
MATR3-238	ENST00000512107	KRTAP9-4	Q9BYQ2	154 aa		4.55	□□□□□ -1.68
MATR3-238	ENST00000512107	SYNE1	Q8NF91	8797 aa	Known RBP	4.44	□□□□□ -1.7
MATR3-238	ENST00000512107	KRTAP6-1	Q3LI64	71 aa		4.43	□□□□□ -1.7
MATR3-238	ENST00000512107	MT1A	P04731	61 aa		4.42	□□□□□ -1.7
MATR3-238	ENST00000512107	SVIP	Q8NHG7	77 aa		4.4	□□□□□ -1.71
MATR3-238	ENST00000512107	AHNAK	Q09666	5890 aa	Known RBP	4.36	□□□□□ -1.71
MATR3-238	ENST00000512107	KRTAP20-2	Q3LI61	65 aa		4.35	□□□□□ -1.71
MATR3-238	ENST00000512107	KRTAP12-4	P60329	112 aa		4.3	□□□□□ -1.72
MATR3-238	ENST00000512107	MUC5AC	P98088	5654 aa		4.21	□□□□□ -1.73
MATR3-238	ENST00000512107	KRTAP5-2	Q701N4	177 aa		4.15	□□□□□ -1.75
MATR3-238	ENST00000512107	KRTAP4-2	Q9BYR5	136 aa		4.14	□□□□□ -1.75
MATR3-238	ENST00000512107	KRTAP6-2	Q3LI66	62 aa		4.13	□□□□□ -1.75
MATR3-238	ENST00000512107	MUC5B	Q9HC84	5762 aa	Predicted RBP	4.13	□□□□□ -1.75
MATR3-238	ENST00000512107	KRTAP4-11	Q9BYQ6	195 aa		4.06	□□□□□ -1.76
MATR3-238	ENST00000512107	MT3	P25713	68 aa		3.97	□□□□□ -1.77
MATR3-238	ENST00000512107	KRTAP5-8	O75690	187 aa		3.95	□□□□□ -1.78
MATR3-238	ENST00000512107		H3BS24	57 aa		3.93	□□□□□ -1.78
MATR3-238	ENST00000512107	LUZP6	Q538Z0	58 aa		3.82	□□□□□ -1.8
MATR3-238	ENST00000512107	OBSCN	Q5VST9	7968 aa		3.76	□□□□□ -1.81
MATR3-238	ENST00000512107	KRTAP5-1	Q6L8H4	278 aa		3.66	□□□□□ -1.82
MATR3-238	ENST00000512107	NDUFAF8	A1L188	74 aa		3.57	□□□□□ -1.84
MATR3-238	ENST00000512107	LCE1E	Q5T753	118 aa		3.54	□□□□□ -1.84
MATR3-238	ENST00000512107	LCE3D	Q9BYE3	92 aa		3.53	□□□□□ -1.84
MATR3-238	ENST00000512107	LCE3E	Q5T5B0	92 aa		3.39	□□□□□ -1.87
MATR3-238	ENST00000512107	LCE1B	Q5T7P3	118 aa		3.37	□□□□□ -1.87
MATR3-238	ENST00000512107	LCE1C	Q5T751	118 aa		3.31	□□□□□ -1.88
MATR3-238	ENST00000512107	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	3.07	□□□□□ -1.92
MATR3-238	ENST00000512107	KRTAP5-11	Q6L8G4	156 aa		2.97	□□□□□ -1.93
MATR3-238	ENST00000512107	PHGR1	C9JFL3	82 aa		2.95	□□□□□ -1.94
MATR3-238	ENST00000512107	KRTAP21-2	Q3LI59	83 aa		2.92	□□□□□ -1.94
MATR3-238	ENST00000512107		A0A0A0MQY5	61 aa		2.85	□□□□□ -1.95
MATR3-238	ENST00000512107	INE1	O15225	51 aa		2.82	□□□□□ -1.96
MATR3-238	ENST00000512107	PRM1	P04553	51 aa		2.81	□□□□□ -1.96
MATR3-238	ENST00000512107	LCE1F	Q5T754	118 aa		2.77	□□□□□ -1.97
MATR3-238	ENST00000512107	KRTAP4-4	Q9BYR3	166 aa		2.66	□□□□□ -1.98
MATR3-238	ENST00000512107	MUC19	Q7Z5P9	8384 aa		2.33	□□□□□ -2.04
MATR3-238	ENST00000512107	KRTAP21-1	Q3LI58	79 aa		2.27	□□□□□ -2.05
MATR3-238	ENST00000512107	MUC16	Q8WXI7	14507 aa		1.68	□□□□□ -2.14

Retrieved 78 of 20,778 RNA–protein pairs in 12.3 ms