RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 MT1LQ93083 61 aa6.03□□□□□ -1.44
NUP54-205ENST00000507257 KRTAP4-7Q9BYR0 210 aa6.02□□□□□ -1.45
NUP54-205ENST00000507257 KMT2DO14686 5537 aa5.98□□□□□ -1.45
NUP54-205ENST00000507257 MT1EP04732 61 aa5.98□□□□□ -1.45
NUP54-205ENST00000507257 KRTAP9-9Q9BYP9 154 aa5.98□□□□□ -1.45
NUP54-205ENST00000507257 KRTAP9-4Q9BYQ2 154 aa5.98□□□□□ -1.45
NUP54-205ENST00000507257 KRTAP4-12Q9BQ66 201 aa5.95□□□□□ -1.46
NUP54-205ENST00000507257 USH2AO75445 5202 aa5.82□□□□□ -1.48
NUP54-205ENST00000507257 LCE1DQ5T752 114 aa5.75□□□□□ -1.49
NUP54-205ENST00000507257 KRTAP4-9Q9BYQ8 210 aa5.63□□□□□ -1.51
NUP54-205ENST00000507257 SSPOA2VEC9 5147 aa5.61□□□□□ -1.51
NUP54-205ENST00000507257 KRTAP19-6Q3LI70 58 aa5.59□□□□□ -1.51
NUP54-205ENST00000507257 KRTAP12-4P60329 112 aa5.58□□□□□ -1.52
NUP54-205ENST00000507257 KRTAP4-2Q9BYR5 136 aa5.58□□□□□ -1.52
NUP54-205ENST00000507257 MT1GP13640 62 aa5.56□□□□□ -1.52
NUP54-205ENST00000507257 MT1MQ8N339 61 aa5.56□□□□□ -1.52
NUP54-205ENST00000507257 KRTAP4-3Q9BYR4 195 aa5.54□□□□□ -1.52
NUP54-205ENST00000507257 KRTAP19-3Q7Z4W3 81 aa5.52□□□□□ -1.53
NUP54-205ENST00000507257 KRTAP5-3Q6L8H2 238 aa5.36□□□□□ -1.55
NUP54-205ENST00000507257 MT1AP04731 61 aa5.35□□□□□ -1.55
NUP54-205ENST00000507257 KRTAP4-11Q9BYQ6 195 aa5.33□□□□□ -1.56
NUP54-205ENST00000507257 CRCT1Q9UGL9 99 aa5.31□□□□□ -1.56
NUP54-205ENST00000507257 LCE5AQ5TCM9 118 aa5.3□□□□□ -1.56
NUP54-205ENST00000507257 FCGBPQ9Y6R7 5405 aaPredicted RBP5.21□□□□□ -1.58
NUP54-205ENST00000507257 MUC12Q9UKN1 5478 aa5.18□□□□□ -1.58
NUP54-205ENST00000507257 LCE3DQ9BYE3 92 aa5.11□□□□□ -1.59
NUP54-205ENST00000507257 LCE3EQ5T5B0 92 aa5.1□□□□□ -1.59
NUP54-205ENST00000507257 KRTAP6-1Q3LI64 71 aa5.08□□□□□ -1.6
NUP54-205ENST00000507257 SPRR2FQ96RM1 72 aa5.05□□□□□ -1.6
NUP54-205ENST00000507257 KRTAP5-5Q701N2 237 aaPredicted RBP5.04□□□□□ -1.6
NUP54-205ENST00000507257 SYNE1Q8NF91 8797 aaKnown RBP4.99□□□□□ -1.61
NUP54-205ENST00000507257 PRM1P04553 51 aa4.97□□□□□ -1.61
NUP54-205ENST00000507257 KRTAP9-7A8MTY7 169 aa4.95□□□□□ -1.62
NUP54-205ENST00000507257 FSIP2Q5CZC0 6907 aa4.94□□□□□ -1.62
NUP54-205ENST00000507257 DSTQ03001 7570 aaKnown RBP4.86□□□□□ -1.63
NUP54-205ENST00000507257 LCE4AQ5TA78 99 aa4.85□□□□□ -1.63
NUP54-205ENST00000507257 KRTAP6-2Q3LI66 62 aa4.74□□□□□ -1.65
NUP54-205ENST00000507257 LCE1AQ5T7P2 110 aa4.72□□□□□ -1.65
NUP54-205ENST00000507257 KRTAP5-9P26371 169 aa4.67□□□□□ -1.66
NUP54-205ENST00000507257 MACF1Q9UPN3 7388 aaKnown RBP4.58□□□□□ -1.68
NUP54-205ENST00000507257 MT3P25713 68 aa4.54□□□□□ -1.68
NUP54-205ENST00000507257 KRTAP6-3Q3LI67 103 aa4.54□□□□□ -1.68
NUP54-205ENST00000507257 MDN1Q9NU22 5596 aa4.5□□□□□ -1.69
NUP54-205ENST00000507257 SPRR2EP22531 72 aa4.49□□□□□ -1.69
NUP54-205ENST00000507257 SPRR2BP35325 72 aa4.49□□□□□ -1.69
NUP54-205ENST00000507257 SPRR2AP35326 72 aa4.49□□□□□ -1.69
NUP54-205ENST00000507257 KRTAP2-2Q9BYT5 123 aa4.48□□□□□ -1.69
NUP54-205ENST00000507257 SYNE2Q8WXH0 6885 aaKnown RBP4.42□□□□□ -1.7
NUP54-205ENST00000507257 SPRR2DP22532 72 aa4.29□□□□□ -1.72
NUP54-205ENST00000507257 NEBP20929 6669 aa4.17□□□□□ -1.74
NUP54-205ENST00000507257 KRTAP20-1Q3LI63 56 aa4.17□□□□□ -1.74
NUP54-205ENST00000507257 KRTAP5-4Q6L8H1 288 aa4.17□□□□□ -1.74
NUP54-205ENST00000507257 OBSCNQ5VST9 7968 aa4.09□□□□□ -1.75
NUP54-205ENST00000507257 KRTAP5-2Q701N4 177 aa3.99□□□□□ -1.77
NUP54-205ENST00000507257 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.91□□□□□ -1.78
NUP54-205ENST00000507257 KRTAP20-2Q3LI61 65 aa3.85□□□□□ -1.79
NUP54-205ENST00000507257 MUC5ACP98088 5654 aa3.8□□□□□ -1.8
NUP54-205ENST00000507257 KRTAP5-10Q6L8G5 202 aa3.74□□□□□ -1.81
NUP54-205ENST00000507257 LCE1EQ5T753 118 aa3.73□□□□□ -1.81
NUP54-205ENST00000507257 MT4P47944 62 aa3.72□□□□□ -1.81
NUP54-205ENST00000507257 KRTAP5-1Q6L8H4 278 aa3.68□□□□□ -1.82
NUP54-205ENST00000507257 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
NUP54-205ENST00000507257 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
NUP54-205ENST00000507257 HMCN1Q96RW7 5635 aa3.52□□□□□ -1.85
NUP54-205ENST00000507257 LCE1BQ5T7P3 118 aa3.48□□□□□ -1.85
NUP54-205ENST00000507257 LCE1CQ5T751 118 aa3.47□□□□□ -1.85
NUP54-205ENST00000507257 KRTAP21-2Q3LI59 83 aa3.31□□□□□ -1.88
NUP54-205ENST00000507257 KRTAP21-1Q3LI58 79 aa3.26□□□□□ -1.89
NUP54-205ENST00000507257 AHNAK2Q8IVF2 5795 aa3.25□□□□□ -1.89
NUP54-205ENST00000507257 KRTAP4-4Q9BYR3 166 aa3.21□□□□□ -1.9
NUP54-205ENST00000507257 KRTAP5-7Q6L8G8 165 aa3.19□□□□□ -1.9
NUP54-205ENST00000507257 KRTAP5-8O75690 187 aa3.07□□□□□ -1.92
NUP54-205ENST00000507257 MUC5BQ9HC84 5762 aaPredicted RBP2.84□□□□□ -1.95
NUP54-205ENST00000507257 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
NUP54-205ENST00000507257 LCE1FQ5T754 118 aa2.72□□□□□ -1.97
NUP54-205ENST00000507257 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
NUP54-205ENST00000507257 PHGR1C9JFL3 82 aa2.53□□□□□ -2
NUP54-205ENST00000507257 MUC16Q8WXI7 14507 aa1.78□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 68 ms