RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 A6NED7 52 aa6.1□□□□□ -1.43
SNCA-209ENST00000506244 LCE5AQ5TCM9 118 aa6.1□□□□□ -1.43
SNCA-209ENST00000506244 KRTAP25-1Q3LHN0 102 aa6.03□□□□□ -1.44
SNCA-209ENST00000506244 PP632Q6XCG6 107 aa6.01□□□□□ -1.45
SNCA-209ENST00000506244 MT1GP13640 62 aa6□□□□□ -1.45
SNCA-209ENST00000506244 MT1LQ93083 61 aa5.95□□□□□ -1.46
SNCA-209ENST00000506244 KRTAP12-3P60328 96 aa5.91□□□□□ -1.46
SNCA-209ENST00000506244 MT1MQ8N339 61 aa5.88□□□□□ -1.47
SNCA-209ENST00000506244 CDC42SE1Q9NRR8 79 aa5.88□□□□□ -1.47
SNCA-209ENST00000506244 KRTAP23-1A1A580 65 aa5.82□□□□□ -1.48
SNCA-209ENST00000506244 DSTQ03001 7570 aaKnown RBP5.8□□□□□ -1.48
SNCA-209ENST00000506244 ROMO1P60602 79 aa5.76□□□□□ -1.49
SNCA-209ENST00000506244 KRTAP4-3Q9BYR4 195 aa5.67□□□□□ -1.5
SNCA-209ENST00000506244 KRTAP19-4Q3LI73 84 aa5.66□□□□□ -1.5
SNCA-209ENST00000506244 KRTAP4-7Q9BYR0 210 aa5.61□□□□□ -1.51
SNCA-209ENST00000506244 LCE4AQ5TA78 99 aa5.6□□□□□ -1.51
SNCA-209ENST00000506244 KRTAP15-1Q3LI76 137 aa5.59□□□□□ -1.51
SNCA-209ENST00000506244 KRTAP4-9Q9BYQ8 210 aa5.57□□□□□ -1.52
SNCA-209ENST00000506244 LCE1DQ5T752 114 aa5.5□□□□□ -1.53
SNCA-209ENST00000506244 KRTAP5-4Q6L8H1 288 aa5.49□□□□□ -1.53
SNCA-209ENST00000506244 MT4P47944 62 aa5.47□□□□□ -1.53
SNCA-209ENST00000506244 LCE3CQ5T5A8 94 aa5.45□□□□□ -1.54
SNCA-209ENST00000506244 BRK1Q8WUW1 75 aa5.44□□□□□ -1.54
SNCA-209ENST00000506244 HMCN1Q96RW7 5635 aa5.4□□□□□ -1.55
SNCA-209ENST00000506244 KRTAP5-5Q701N2 237 aaPredicted RBP5.37□□□□□ -1.55
SNCA-209ENST00000506244 LOC100996750A0A140TA64 210 aa5.31□□□□□ -1.56
SNCA-209ENST00000506244 KRTAP4-6Q9BYQ5 205 aa5.3□□□□□ -1.56
SNCA-209ENST00000506244 GPR98Q8WXG9 6306 aa5.26□□□□□ -1.57
SNCA-209ENST00000506244 KRTAP12-4P60329 112 aa5.24□□□□□ -1.57
SNCA-209ENST00000506244 SPRR5A0A1B0GTR4 108 aa5.21□□□□□ -1.58
SNCA-209ENST00000506244 KRTAP20-2Q3LI61 65 aa5.18□□□□□ -1.58
SNCA-209ENST00000506244 AHNAK2Q8IVF2 5795 aa5.12□□□□□ -1.59
SNCA-209ENST00000506244 PMAIP1Q13794 54 aa5.12□□□□□ -1.59
SNCA-209ENST00000506244 MT1AP04731 61 aa5.09□□□□□ -1.59
SNCA-209ENST00000506244 KRTAP9-6A8MVA2 160 aa5.07□□□□□ -1.6
SNCA-209ENST00000506244 SYNE1Q8NF91 8797 aaKnown RBP5.04□□□□□ -1.6
SNCA-209ENST00000506244 KRTAP6-1Q3LI64 71 aa5.01□□□□□ -1.61
SNCA-209ENST00000506244 KRTAP5-10Q6L8G5 202 aa5.01□□□□□ -1.61
SNCA-209ENST00000506244 KRTAP5-3Q6L8H2 238 aa5□□□□□ -1.61
SNCA-209ENST00000506244 PRO0628Q9UI54 55 aa4.95□□□□□ -1.62
SNCA-209ENST00000506244 KRTAP9-4Q9BYQ2 154 aa4.87□□□□□ -1.63
SNCA-209ENST00000506244 KRTAP5-2Q701N4 177 aa4.85□□□□□ -1.63
SNCA-209ENST00000506244 PRAC1Q96KF2 57 aa4.83□□□□□ -1.64
SNCA-209ENST00000506244 KRTAP5-7Q6L8G8 165 aa4.8□□□□□ -1.64
SNCA-209ENST00000506244 KRTAP6-2Q3LI66 62 aa4.76□□□□□ -1.65
SNCA-209ENST00000506244 KRTAP4-11Q9BYQ6 195 aa4.68□□□□□ -1.66
SNCA-209ENST00000506244 MT3P25713 68 aa4.66□□□□□ -1.66
SNCA-209ENST00000506244 KTN1-AS1Q86SY8 53 aa4.66□□□□□ -1.66
SNCA-209ENST00000506244 KRTAP5-8O75690 187 aa4.5□□□□□ -1.69
SNCA-209ENST00000506244 H3BS24 57 aa4.48□□□□□ -1.69
SNCA-209ENST00000506244 OBSCNQ5VST9 7968 aa4.4□□□□□ -1.7
SNCA-209ENST00000506244 KRTAP5-1Q6L8H4 278 aa4.3□□□□□ -1.72
SNCA-209ENST00000506244 KRTAP9-9Q9BYP9 154 aa4.28□□□□□ -1.72
SNCA-209ENST00000506244 LCE1EQ5T753 118 aa4.23□□□□□ -1.73
SNCA-209ENST00000506244 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
SNCA-209ENST00000506244 MUC5BQ9HC84 5762 aaPredicted RBP4.2□□□□□ -1.74
SNCA-209ENST00000506244 A0A0A0MQY5 61 aa4.17□□□□□ -1.74
SNCA-209ENST00000506244 LUZP6Q538Z0 58 aa4.17□□□□□ -1.74
SNCA-209ENST00000506244 AHNAKQ09666 5890 aaKnown RBP4.16□□□□□ -1.74
SNCA-209ENST00000506244 LCE3DQ9BYE3 92 aa3.98□□□□□ -1.77
SNCA-209ENST00000506244 LCE1BQ5T7P3 118 aa3.94□□□□□ -1.78
SNCA-209ENST00000506244 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
SNCA-209ENST00000506244 LCE1CQ5T751 118 aa3.92□□□□□ -1.78
SNCA-209ENST00000506244 LCE3EQ5T5B0 92 aa3.78□□□□□ -1.8
SNCA-209ENST00000506244 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.6□□□□□ -1.83
SNCA-209ENST00000506244 NDUFAF8A1L188 74 aa3.56□□□□□ -1.84
SNCA-209ENST00000506244 KRTAP5-11Q6L8G4 156 aa3.54□□□□□ -1.84
SNCA-209ENST00000506244 KRTAP4-12Q9BQ66 201 aa3.46□□□□□ -1.86
SNCA-209ENST00000506244 LCE1FQ5T754 118 aa3.42□□□□□ -1.86
SNCA-209ENST00000506244 KRTAP21-2Q3LI59 83 aa3.29□□□□□ -1.88
SNCA-209ENST00000506244 INE1O15225 51 aa3.11□□□□□ -1.91
SNCA-209ENST00000506244 PHGR1C9JFL3 82 aa3.04□□□□□ -1.92
SNCA-209ENST00000506244 KRTAP4-4Q9BYR3 166 aa2.95□□□□□ -1.94
SNCA-209ENST00000506244 PRM1P04553 51 aa2.93□□□□□ -1.94
SNCA-209ENST00000506244 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
SNCA-209ENST00000506244 KRTAP21-1Q3LI58 79 aa2.24□□□□□ -2.05
SNCA-209ENST00000506244 MUC16Q8WXI7 14507 aa1.97□□□□□ -2.09
Retrieved 77 of 20,778 RNA–protein pairs in 5.7 ms