RNA–Protein interactions for RNA: ENST00000494973.1

APTX-231, Transcript of aprataxin, human

TSL 4

Gene APTX, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-231	ENST00000494973	SPRR2B	P35325	72 aa		4.9	□□□□□ -1.63
APTX-231	ENST00000494973	SPRR2A	P35326	72 aa		4.9	□□□□□ -1.63
APTX-231	ENST00000494973	PRAC1	Q96KF2	57 aa		4.9	□□□□□ -1.63
APTX-231	ENST00000494973	KRTAP19-4	Q3LI73	84 aa		4.89	□□□□□ -1.63
APTX-231	ENST00000494973	MUC12	Q9UKN1	5478 aa		4.87	□□□□□ -1.63
APTX-231	ENST00000494973	LCE1A	Q5T7P2	110 aa		4.87	□□□□□ -1.63
APTX-231	ENST00000494973	KRTAP19-3	Q7Z4W3	81 aa		4.87	□□□□□ -1.63
APTX-231	ENST00000494973	KRTAP15-1	Q3LI76	137 aa		4.86	□□□□□ -1.63
APTX-231	ENST00000494973	MT1L	Q93083	61 aa		4.84	□□□□□ -1.63
APTX-231	ENST00000494973	MT1G	P13640	62 aa		4.83	□□□□□ -1.64
APTX-231	ENST00000494973	MDN1	Q9NU22	5596 aa		4.81	□□□□□ -1.64
APTX-231	ENST00000494973	LCE5A	Q5TCM9	118 aa		4.79	□□□□□ -1.64
APTX-231	ENST00000494973	SVIP	Q8NHG7	77 aa		4.76	□□□□□ -1.65
APTX-231	ENST00000494973	SPRR2D	P22532	72 aa		4.74	□□□□□ -1.65
APTX-231	ENST00000494973	MT1M	Q8N339	61 aa		4.71	□□□□□ -1.66
APTX-231	ENST00000494973	KRTAP4-12	Q9BQ66	201 aa		4.7	□□□□□ -1.66
APTX-231	ENST00000494973	LCE3C	Q5T5A8	94 aa		4.65	□□□□□ -1.67
APTX-231	ENST00000494973	LCE3B	Q5TA77	95 aa		4.59	□□□□□ -1.67
APTX-231	ENST00000494973	KRTAP2-3	P0C7H8	128 aa		4.58	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP2-4	Q9BYR9	128 aa		4.58	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP20-1	Q3LI63	56 aa		4.57	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP9-9	Q9BYP9	154 aa		4.53	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP9-4	Q9BYQ2	154 aa		4.53	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP4-7	Q9BYR0	210 aa		4.53	□□□□□ -1.68
APTX-231	ENST00000494973	KRTAP4-3	Q9BYR4	195 aa		4.48	□□□□□ -1.69
APTX-231	ENST00000494973	DST	Q03001	7570 aa	Known RBP	4.48	□□□□□ -1.69
APTX-231	ENST00000494973	KRTAP2-2	Q9BYT5	123 aa		4.47	□□□□□ -1.69
APTX-231	ENST00000494973	KRTAP2-1	Q9BYU5	128 aa		4.47	□□□□□ -1.69
APTX-231	ENST00000494973	SPRR5	A0A1B0GTR4	108 aa		4.38	□□□□□ -1.71
APTX-231	ENST00000494973	LCE1D	Q5T752	114 aa		4.31	□□□□□ -1.72
APTX-231	ENST00000494973		H3BS24	57 aa		4.29	□□□□□ -1.72
APTX-231	ENST00000494973	LCE4A	Q5TA78	99 aa		4.29	□□□□□ -1.72
APTX-231	ENST00000494973	KRTAP9-6	A8MVA2	160 aa		4.28	□□□□□ -1.72
APTX-231	ENST00000494973	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.26	□□□□□ -1.73
APTX-231	ENST00000494973	LUZP6	Q538Z0	58 aa		4.22	□□□□□ -1.73
APTX-231	ENST00000494973	KRTAP5-4	Q6L8H1	288 aa		4.21	□□□□□ -1.74
APTX-231	ENST00000494973	KRTAP4-9	Q9BYQ8	210 aa		4.2	□□□□□ -1.74
APTX-231	ENST00000494973	MT1A	P04731	61 aa		4.16	□□□□□ -1.74
APTX-231	ENST00000494973	KRTAP12-4	P60329	112 aa		4.11	□□□□□ -1.75
APTX-231	ENST00000494973	KRTAP4-2	Q9BYR5	136 aa		4.1	□□□□□ -1.75
APTX-231	ENST00000494973	MT4	P47944	62 aa		4.06	□□□□□ -1.76
APTX-231	ENST00000494973	KRTAP4-11	Q9BYQ6	195 aa		4.06	□□□□□ -1.76
APTX-231	ENST00000494973	KRTAP6-1	Q3LI64	71 aa		4.04	□□□□□ -1.76
APTX-231	ENST00000494973	SYNE1	Q8NF91	8797 aa	Known RBP	4.01	□□□□□ -1.77
APTX-231	ENST00000494973	HMCN1	Q96RW7	5635 aa		3.98	□□□□□ -1.77
APTX-231	ENST00000494973	KRTAP20-2	Q3LI61	65 aa		3.94	□□□□□ -1.78
APTX-231	ENST00000494973	NDUFAF8	A1L188	74 aa		3.8	□□□□□ -1.8
APTX-231	ENST00000494973	MT3	P25713	68 aa		3.8	□□□□□ -1.8
APTX-231	ENST00000494973	KRTAP6-2	Q3LI66	62 aa		3.78	□□□□□ -1.8
APTX-231	ENST00000494973	KRTAP5-3	Q6L8H2	238 aa		3.78	□□□□□ -1.8
APTX-231	ENST00000494973	KRTAP5-2	Q701N4	177 aa		3.78	□□□□□ -1.8
APTX-231	ENST00000494973	AHNAK2	Q8IVF2	5795 aa		3.66	□□□□□ -1.82
APTX-231	ENST00000494973	GPR98	Q8WXG9	6306 aa		3.62	□□□□□ -1.83
APTX-231	ENST00000494973	KRTAP5-10	Q6L8G5	202 aa		3.51	□□□□□ -1.85
APTX-231	ENST00000494973	LCE3D	Q9BYE3	92 aa		3.47	□□□□□ -1.85
APTX-231	ENST00000494973	OBSCN	Q5VST9	7968 aa		3.46	□□□□□ -1.86
APTX-231	ENST00000494973		A0A0A0MQY5	61 aa		3.39	□□□□□ -1.87
APTX-231	ENST00000494973	LCE1E	Q5T753	118 aa		3.39	□□□□□ -1.87
APTX-231	ENST00000494973	LCE3E	Q5T5B0	92 aa		3.35	□□□□□ -1.87
APTX-231	ENST00000494973	KRTAP5-7	Q6L8G8	165 aa		3.35	□□□□□ -1.87
APTX-231	ENST00000494973	KRTAP5-8	O75690	187 aa		3.34	□□□□□ -1.87
APTX-231	ENST00000494973	KRTAP5-1	Q6L8H4	278 aa		3.27	□□□□□ -1.89
APTX-231	ENST00000494973	INE1	O15225	51 aa		3.24	□□□□□ -1.89
APTX-231	ENST00000494973	MUC5AC	P98088	5654 aa		3.17	□□□□□ -1.9
APTX-231	ENST00000494973	LCE1C	Q5T751	118 aa		3.13	□□□□□ -1.91
APTX-231	ENST00000494973	LCE1B	Q5T7P3	118 aa		3.13	□□□□□ -1.91
APTX-231	ENST00000494973	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.96	□□□□□ -1.94
APTX-231	ENST00000494973	AHNAK	Q09666	5890 aa	Known RBP	2.92	□□□□□ -1.94
APTX-231	ENST00000494973	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.91	□□□□□ -1.94
APTX-231	ENST00000494973	KRTAP5-11	Q6L8G4	156 aa		2.79	□□□□□ -1.96
APTX-231	ENST00000494973	PRM1	P04553	51 aa		2.75	□□□□□ -1.97
APTX-231	ENST00000494973	KRTAP21-2	Q3LI59	83 aa		2.65	□□□□□ -1.99
APTX-231	ENST00000494973	LCE1F	Q5T754	118 aa		2.64	□□□□□ -1.99
APTX-231	ENST00000494973	PHGR1	C9JFL3	82 aa		2.37	□□□□□ -2.03
APTX-231	ENST00000494973	KRTAP4-4	Q9BYR3	166 aa		2.31	□□□□□ -2.04
APTX-231	ENST00000494973	MUC19	Q7Z5P9	8384 aa		2.04	□□□□□ -2.08
APTX-231	ENST00000494973	KRTAP21-1	Q3LI58	79 aa		1.65	□□□□□ -2.15
APTX-231	ENST00000494973	MUC16	Q8WXI7	14507 aa		1.48	□□□□□ -2.17

Retrieved 78 of 20,778 RNA–protein pairs in 73.3 ms