RNA–Protein interactions for RNA: ENST00000494395.1

ITGB1-217, Transcript of integrin subunit beta 1, humanhuman

TSL 3

Gene ITGB1, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-217ENST00000494395 SPRR2EP22531 72 aa3.4□□□□□ -1.87
ITGB1-217ENST00000494395 SPRR2BP35325 72 aa3.4□□□□□ -1.87
ITGB1-217ENST00000494395 SPRR2AP35326 72 aa3.4□□□□□ -1.87
ITGB1-217ENST00000494395 LINC01558Q9Y6Z2 57 aa3.4□□□□□ -1.87
ITGB1-217ENST00000494395 SPINT4Q6UDR6 99 aa3.38□□□□□ -1.87
ITGB1-217ENST00000494395 SMIM26A0A096LP01 95 aa3.37□□□□□ -1.87
ITGB1-217ENST00000494395 KRTAP20-1Q3LI63 56 aa3.37□□□□□ -1.87
ITGB1-217ENST00000494395 LCE3EQ5T5B0 92 aa3.36□□□□□ -1.87
ITGB1-217ENST00000494395 PRR15LQ9BU68 103 aa3.34□□□□□ -1.87
ITGB1-217ENST00000494395 KRTAP2-3P0C7H8 128 aa3.31□□□□□ -1.88
ITGB1-217ENST00000494395 KRTAP19-7Q3SYF9 63 aa3.31□□□□□ -1.88
ITGB1-217ENST00000494395 KRTAP2-4Q9BYR9 128 aa3.31□□□□□ -1.88
ITGB1-217ENST00000494395 KRTAP9-6A8MVA2 160 aa3.3□□□□□ -1.88
ITGB1-217ENST00000494395 SPRR2DP22532 72 aa3.28□□□□□ -1.88
ITGB1-217ENST00000494395 C10orf95Q9H7T3 257 aa3.28□□□□□ -1.88
ITGB1-217ENST00000494395 UQCR11O14957 56 aa3.27□□□□□ -1.89
ITGB1-217ENST00000494395 MT1EP04732 61 aa3.27□□□□□ -1.89
ITGB1-217ENST00000494395 Q1T7F1 81 aa3.22□□□□□ -1.89
ITGB1-217ENST00000494395 KRTAP19-5Q3LI72 72 aa3.22□□□□□ -1.89
ITGB1-217ENST00000494395 KRTAP19-3Q7Z4W3 81 aa3.21□□□□□ -1.9
ITGB1-217ENST00000494395 KRTAP2-1Q9BYU5 128 aa3.21□□□□□ -1.9
ITGB1-217ENST00000494395 TNP1P09430 55 aa3.2□□□□□ -1.9
ITGB1-217ENST00000494395 V9GYY9 64 aa3.2□□□□□ -1.9
ITGB1-217ENST00000494395 MIR22HGQ0VDD5 57 aa3.19□□□□□ -1.9
ITGB1-217ENST00000494395 LCE3AQ5TA76 89 aa3.19□□□□□ -1.9
ITGB1-217ENST00000494395 PSPHP1O15172 72 aa3.18□□□□□ -1.9
ITGB1-217ENST00000494395 GPR98Q8WXG9 6306 aa3.16□□□□□ -1.9
ITGB1-217ENST00000494395 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.14□□□□□ -1.91
ITGB1-217ENST00000494395 MT1LQ93083 61 aa3.14□□□□□ -1.91
ITGB1-217ENST00000494395 MT1GP13640 62 aa3.13□□□□□ -1.91
ITGB1-217ENST00000494395 RPS28P62857 69 aaKnown RBP3.13□□□□□ -1.91
ITGB1-217ENST00000494395 DSTQ03001 7570 aaKnown RBP3.11□□□□□ -1.91
ITGB1-217ENST00000494395 MT1MQ8N339 61 aa3.1□□□□□ -1.91
ITGB1-217ENST00000494395 KRTAP25-1Q3LHN0 102 aa3.08□□□□□ -1.92
ITGB1-217ENST00000494395 K7ERS5 55 aa3.07□□□□□ -1.92
ITGB1-217ENST00000494395 PP632Q6XCG6 107 aa3.07□□□□□ -1.92
ITGB1-217ENST00000494395 A6NED7 52 aa3.06□□□□□ -1.92
ITGB1-217ENST00000494395 KRTAP12-3P60328 96 aa3.06□□□□□ -1.92
ITGB1-217ENST00000494395 KRTAP4-3Q9BYR4 195 aa3.02□□□□□ -1.93
ITGB1-217ENST00000494395 CDC42SE1Q9NRR8 79 aa2.97□□□□□ -1.93
ITGB1-217ENST00000494395 KRTAP5-4Q6L8H1 288 aa2.93□□□□□ -1.94
ITGB1-217ENST00000494395 ROMO1P60602 79 aa2.92□□□□□ -1.94
ITGB1-217ENST00000494395 SPRR5A0A1B0GTR4 108 aa2.86□□□□□ -1.95
ITGB1-217ENST00000494395 KRTAP5-5Q701N2 237 aaPredicted RBP2.86□□□□□ -1.95
ITGB1-217ENST00000494395 MT4P47944 62 aa2.85□□□□□ -1.95
ITGB1-217ENST00000494395 LUZP6Q538Z0 58 aa2.84□□□□□ -1.95
ITGB1-217ENST00000494395 LCE3DQ9BYE3 92 aa2.84□□□□□ -1.95
ITGB1-217ENST00000494395 HMCN1Q96RW7 5635 aa2.81□□□□□ -1.96
ITGB1-217ENST00000494395 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
ITGB1-217ENST00000494395 PRO0628Q9UI54 55 aa2.75□□□□□ -1.97
ITGB1-217ENST00000494395 KRTAP20-2Q3LI61 65 aa2.73□□□□□ -1.97
ITGB1-217ENST00000494395 BRK1Q8WUW1 75 aa2.71□□□□□ -1.98
ITGB1-217ENST00000494395 SYNE1Q8NF91 8797 aaKnown RBP2.71□□□□□ -1.98
ITGB1-217ENST00000494395 AHNAK2Q8IVF2 5795 aa2.7□□□□□ -1.98
ITGB1-217ENST00000494395 KRTAP12-4P60329 112 aa2.69□□□□□ -1.98
ITGB1-217ENST00000494395 MT1AP04731 61 aa2.67□□□□□ -1.98
ITGB1-217ENST00000494395 KRTAP5-10Q6L8G5 202 aa2.67□□□□□ -1.98
ITGB1-217ENST00000494395 KRTAP6-1Q3LI64 71 aa2.65□□□□□ -1.99
ITGB1-217ENST00000494395 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
ITGB1-217ENST00000494395 OBSCNQ5VST9 7968 aa2.61□□□□□ -1.99
ITGB1-217ENST00000494395 KRTAP5-2Q701N4 177 aa2.59□□□□□ -1.99
ITGB1-217ENST00000494395 PMAIP1Q13794 54 aa2.55□□□□□ -2
ITGB1-217ENST00000494395 KRTAP5-7Q6L8G8 165 aa2.55□□□□□ -2
ITGB1-217ENST00000494395 KRTAP6-2Q3LI66 62 aa2.5□□□□□ -2.01
ITGB1-217ENST00000494395 LCE1CQ5T751 118 aa2.41□□□□□ -2.02
ITGB1-217ENST00000494395 LCE1BQ5T7P3 118 aa2.41□□□□□ -2.02
ITGB1-217ENST00000494395 AHNAKQ09666 5890 aaKnown RBP2.4□□□□□ -2.02
ITGB1-217ENST00000494395 KRTAP5-8O75690 187 aa2.4□□□□□ -2.03
ITGB1-217ENST00000494395 KTN1-AS1Q86SY8 53 aa2.32□□□□□ -2.04
ITGB1-217ENST00000494395 MUC5ACP98088 5654 aa2.28□□□□□ -2.04
ITGB1-217ENST00000494395 MUC5BQ9HC84 5762 aaPredicted RBP2.27□□□□□ -2.05
ITGB1-217ENST00000494395 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
ITGB1-217ENST00000494395 KRTAP21-2Q3LI59 83 aa1.75□□□□□ -2.13
ITGB1-217ENST00000494395 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
ITGB1-217ENST00000494395 PRM1P04553 51 aa1.51□□□□□ -2.17
ITGB1-217ENST00000494395 INE1O15225 51 aa1.43□□□□□ -2.18
ITGB1-217ENST00000494395 KRTAP21-1Q3LI58 79 aa1.16□□□□□ -2.22
ITGB1-217ENST00000494395 MUC16Q8WXI7 14507 aa1.08□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 136.2 ms