RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 LOC100996750A0A140TA64 210 aa5.82□□□□□ -1.48
COL27A1-207ENST00000494090 KRTAP9-2Q9BYQ4 174 aa5.81□□□□□ -1.48
COL27A1-207ENST00000494090 MT4P47944 62 aa5.81□□□□□ -1.48
COL27A1-207ENST00000494090 ABCA13Q86UQ4 5058 aa5.81□□□□□ -1.48
COL27A1-207ENST00000494090 KRTAP4-3Q9BYR4 195 aa5.76□□□□□ -1.49
COL27A1-207ENST00000494090 KRTAP19-7Q3SYF9 63 aa5.76□□□□□ -1.49
COL27A1-207ENST00000494090 PRM1P04553 51 aa5.71□□□□□ -1.5
COL27A1-207ENST00000494090 LCE2AQ5TA79 106 aaPredicted RBP5.66□□□□□ -1.5
COL27A1-207ENST00000494090 MT1AP04731 61 aa5.65□□□□□ -1.51
COL27A1-207ENST00000494090 LCE1BQ5T7P3 118 aa5.63□□□□□ -1.51
COL27A1-207ENST00000494090 KRTAP2-3P0C7H8 128 aa5.62□□□□□ -1.51
COL27A1-207ENST00000494090 KRTAP2-4Q9BYR9 128 aa5.62□□□□□ -1.51
COL27A1-207ENST00000494090 KRTAP2-1Q9BYU5 128 aa5.62□□□□□ -1.51
COL27A1-207ENST00000494090 UBR4Q5T4S7 5183 aa5.61□□□□□ -1.51
COL27A1-207ENST00000494090 LCE1DQ5T752 114 aa5.61□□□□□ -1.51
COL27A1-207ENST00000494090 SYNE1Q8NF91 8797 aaKnown RBP5.6□□□□□ -1.51
COL27A1-207ENST00000494090 FAT4Q6V0I7 4981 aa5.59□□□□□ -1.52
COL27A1-207ENST00000494090 RNF213Q63HN8 5207 aa5.58□□□□□ -1.52
COL27A1-207ENST00000494090 HMCN2Q8NDA2 5059 aa5.57□□□□□ -1.52
COL27A1-207ENST00000494090 KRTAP9-6A0A140TA67 174 aa5.55□□□□□ -1.52
COL27A1-207ENST00000494090 LCE1AQ5T7P2 110 aa5.46□□□□□ -1.54
COL27A1-207ENST00000494090 FSIP2Q5CZC0 6907 aa5.46□□□□□ -1.54
COL27A1-207ENST00000494090 KRTAP20-1Q3LI63 56 aa5.41□□□□□ -1.54
COL27A1-207ENST00000494090 KRTAP4-9Q9BYQ8 210 aa5.4□□□□□ -1.55
COL27A1-207ENST00000494090 KRTAP6-3Q3LI67 103 aa5.34□□□□□ -1.55
COL27A1-207ENST00000494090 KRTAP9-6A8MVA2 160 aa5.34□□□□□ -1.56
COL27A1-207ENST00000494090 LCE5AQ5TCM9 118 aa5.31□□□□□ -1.56
COL27A1-207ENST00000494090 KRTAP9-7A8MTY7 169 aa5.26□□□□□ -1.57
COL27A1-207ENST00000494090 KRTAP6-1Q3LI64 71 aa5.22□□□□□ -1.57
COL27A1-207ENST00000494090 LCE4AQ5TA78 99 aa5.22□□□□□ -1.57
COL27A1-207ENST00000494090 MUC2Q02817 5179 aa5.18□□□□□ -1.58
COL27A1-207ENST00000494090 KRTAP9-4Q9BYQ2 154 aa5.16□□□□□ -1.58
COL27A1-207ENST00000494090 KRTAP6-2Q3LI66 62 aa5.11□□□□□ -1.59
COL27A1-207ENST00000494090 SYNE2Q8WXH0 6885 aaKnown RBP5.11□□□□□ -1.59
COL27A1-207ENST00000494090 KRTAP2-2Q9BYT5 123 aa5.07□□□□□ -1.6
COL27A1-207ENST00000494090 OBSCNQ5VST9 7968 aa5.07□□□□□ -1.6
COL27A1-207ENST00000494090 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.04□□□□□ -1.6
COL27A1-207ENST00000494090 LCE1CQ5T751 118 aa4.84□□□□□ -1.64
COL27A1-207ENST00000494090 LCE1EQ5T753 118 aa4.84□□□□□ -1.64
COL27A1-207ENST00000494090 LCE1FQ5T754 118 aa4.84□□□□□ -1.64
COL27A1-207ENST00000494090 USH2AO75445 5202 aa4.69□□□□□ -1.66
COL27A1-207ENST00000494090 FCGBPQ9Y6R7 5405 aaPredicted RBP4.62□□□□□ -1.67
COL27A1-207ENST00000494090 KRTAP9-9Q9BYP9 154 aa4.55□□□□□ -1.68
COL27A1-207ENST00000494090 KRTAP5-9P26371 169 aa4.45□□□□□ -1.7
COL27A1-207ENST00000494090 KMT2DO14686 5537 aa4.44□□□□□ -1.7
COL27A1-207ENST00000494090 DSTQ03001 7570 aaKnown RBP4.41□□□□□ -1.7
COL27A1-207ENST00000494090 NEBP20929 6669 aa4.37□□□□□ -1.71
COL27A1-207ENST00000494090 MACF1Q9UPN3 7388 aaKnown RBP4.36□□□□□ -1.71
COL27A1-207ENST00000494090 SSPOA2VEC9 5147 aa4.33□□□□□ -1.72
COL27A1-207ENST00000494090 KRTAP20-2Q3LI61 65 aa4.24□□□□□ -1.73
COL27A1-207ENST00000494090 KRTAP4-6Q9BYQ5 205 aa4.21□□□□□ -1.73
COL27A1-207ENST00000494090 KRTAP4-11Q9BYQ6 195 aa4.19□□□□□ -1.74
COL27A1-207ENST00000494090 MDN1Q9NU22 5596 aa4.13□□□□□ -1.75
COL27A1-207ENST00000494090 MUC12Q9UKN1 5478 aa4.11□□□□□ -1.75
COL27A1-207ENST00000494090 MUC19Q7Z5P9 8384 aa4.08□□□□□ -1.76
COL27A1-207ENST00000494090 GPR98Q8WXG9 6306 aa4.07□□□□□ -1.76
COL27A1-207ENST00000494090 KRTAP5-5Q701N2 237 aaPredicted RBP4.01□□□□□ -1.77
COL27A1-207ENST00000494090 KRTAP5-4Q6L8H1 288 aa3.99□□□□□ -1.77
COL27A1-207ENST00000494090 KRTAP4-4Q9BYR3 166 aa3.78□□□□□ -1.8
COL27A1-207ENST00000494090 KRTAP4-12Q9BQ66 201 aa3.76□□□□□ -1.81
COL27A1-207ENST00000494090 KRTAP4-2Q9BYR5 136 aa3.76□□□□□ -1.81
COL27A1-207ENST00000494090 KRTAP5-3Q6L8H2 238 aa3.49□□□□□ -1.85
COL27A1-207ENST00000494090 AHNAK2Q8IVF2 5795 aa3.39□□□□□ -1.87
COL27A1-207ENST00000494090 MUC5ACP98088 5654 aa3.33□□□□□ -1.88
COL27A1-207ENST00000494090 HMCN1Q96RW7 5635 aa3.21□□□□□ -1.89
COL27A1-207ENST00000494090 KRTAP5-10Q6L8G5 202 aa3.19□□□□□ -1.9
COL27A1-207ENST00000494090 KRTAP5-2Q701N4 177 aa3.15□□□□□ -1.91
COL27A1-207ENST00000494090 KRTAP5-8O75690 187 aa3.11□□□□□ -1.91
COL27A1-207ENST00000494090 PHGR1C9JFL3 82 aa2.91□□□□□ -1.94
COL27A1-207ENST00000494090 MUC5BQ9HC84 5762 aaPredicted RBP2.88□□□□□ -1.95
COL27A1-207ENST00000494090 KRTAP5-11Q6L8G4 156 aa2.83□□□□□ -1.96
COL27A1-207ENST00000494090 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
COL27A1-207ENST00000494090 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
COL27A1-207ENST00000494090 KRTAP21-2Q3LI59 83 aa2.71□□□□□ -1.98
COL27A1-207ENST00000494090 KRTAP21-1Q3LI58 79 aa2.58□□□□□ -2
COL27A1-207ENST00000494090 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.55□□□□□ -2
COL27A1-207ENST00000494090 KRTAP5-7Q6L8G8 165 aa2.39□□□□□ -2.03
COL27A1-207ENST00000494090 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.14
Retrieved 78 of 20,778 RNA–protein pairs in 11 ms