RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	SPRR2E	P22531	72 aa		3.86	□□□□□ -1.79
MACF1-222	ENST00000494012	SPRR2B	P35325	72 aa		3.86	□□□□□ -1.79
MACF1-222	ENST00000494012	SPRR2A	P35326	72 aa		3.86	□□□□□ -1.79
MACF1-222	ENST00000494012		K7ERS5	55 aa		3.83	□□□□□ -1.8
MACF1-222	ENST00000494012	KRTAP2-2	Q9BYT5	123 aa		3.83	□□□□□ -1.8
MACF1-222	ENST00000494012	KRTAP2-1	Q9BYU5	128 aa		3.83	□□□□□ -1.8
MACF1-222	ENST00000494012		A6NED7	52 aa		3.81	□□□□□ -1.8
MACF1-222	ENST00000494012	TNP1	P09430	55 aa		3.81	□□□□□ -1.8
MACF1-222	ENST00000494012	LCE1A	Q5T7P2	110 aa		3.8	□□□□□ -1.8
MACF1-222	ENST00000494012	C10orf95	Q9H7T3	257 aa		3.8	□□□□□ -1.8
MACF1-222	ENST00000494012	KRTAP15-1	Q3LI76	137 aa		3.79	□□□□□ -1.8
MACF1-222	ENST00000494012	SPRR2D	P22532	72 aa		3.73	□□□□□ -1.81
MACF1-222	ENST00000494012	KRTAP19-7	Q3SYF9	63 aa		3.73	□□□□□ -1.81
MACF1-222	ENST00000494012	MT1E	P04732	61 aa		3.7	□□□□□ -1.82
MACF1-222	ENST00000494012	LCE3A	Q5TA76	89 aa		3.7	□□□□□ -1.82
MACF1-222	ENST00000494012	KRTAP25-1	Q3LHN0	102 aa		3.69	□□□□□ -1.82
MACF1-222	ENST00000494012	KRTAP19-5	Q3LI72	72 aa		3.69	□□□□□ -1.82
MACF1-222	ENST00000494012	CDC42SE1	Q9NRR8	79 aa		3.66	□□□□□ -1.82
MACF1-222	ENST00000494012	KRTAP19-3	Q7Z4W3	81 aa		3.64	□□□□□ -1.83
MACF1-222	ENST00000494012	GPR98	Q8WXG9	6306 aa		3.6	□□□□□ -1.83
MACF1-222	ENST00000494012	MT1G	P13640	62 aa		3.59	□□□□□ -1.83
MACF1-222	ENST00000494012	PP632	Q6XCG6	107 aa		3.59	□□□□□ -1.83
MACF1-222	ENST00000494012	KRTAP12-3	P60328	96 aa		3.58	□□□□□ -1.84
MACF1-222	ENST00000494012	ROMO1	P60602	79 aa		3.57	□□□□□ -1.84
MACF1-222	ENST00000494012	MT1L	Q93083	61 aa		3.57	□□□□□ -1.84
MACF1-222	ENST00000494012	SVIP	Q8NHG7	77 aa		3.56	□□□□□ -1.84
MACF1-222	ENST00000494012	DST	Q03001	7570 aa	Known RBP	3.52	□□□□□ -1.85
MACF1-222	ENST00000494012	MT1M	Q8N339	61 aa		3.51	□□□□□ -1.85
MACF1-222	ENST00000494012	BRK1	Q8WUW1	75 aa		3.46	□□□□□ -1.86
MACF1-222	ENST00000494012	KRTAP4-3	Q9BYR4	195 aa		3.39	□□□□□ -1.87
MACF1-222	ENST00000494012	KRTAP5-3	Q6L8H2	238 aa		3.35	□□□□□ -1.87
MACF1-222	ENST00000494012	MT4	P47944	62 aa		3.32	□□□□□ -1.88
MACF1-222	ENST00000494012	HMCN1	Q96RW7	5635 aa		3.31	□□□□□ -1.88
MACF1-222	ENST00000494012	LCE3C	Q5T5A8	94 aa		3.31	□□□□□ -1.88
MACF1-222	ENST00000494012		A0A0A0MQY5	61 aa		3.27	□□□□□ -1.89
MACF1-222	ENST00000494012	KRTAP5-10	Q6L8G5	202 aa		3.27	□□□□□ -1.89
MACF1-222	ENST00000494012	AHNAK2	Q8IVF2	5795 aa		3.27	□□□□□ -1.89
MACF1-222	ENST00000494012	PMAIP1	Q13794	54 aa		3.26	□□□□□ -1.89
MACF1-222	ENST00000494012	KRTAP5-4	Q6L8H1	288 aa		3.25	□□□□□ -1.89
MACF1-222	ENST00000494012	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.2	□□□□□ -1.9
MACF1-222	ENST00000494012	KRTAP5-7	Q6L8G8	165 aa		3.17	□□□□□ -1.9
MACF1-222	ENST00000494012	PRO0628	Q9UI54	55 aa		3.16	□□□□□ -1.9
MACF1-222	ENST00000494012	SPRR5	A0A1B0GTR4	108 aa		3.12	□□□□□ -1.91
MACF1-222	ENST00000494012	KRTAP12-4	P60329	112 aa		3.11	□□□□□ -1.91
MACF1-222	ENST00000494012	KRTAP9-6	A8MVA2	160 aa		3.08	□□□□□ -1.92
MACF1-222	ENST00000494012	KRTAP20-2	Q3LI61	65 aa		3.05	□□□□□ -1.92
MACF1-222	ENST00000494012	PRAC1	Q96KF2	57 aa		3.05	□□□□□ -1.92
MACF1-222	ENST00000494012	MT1A	P04731	61 aa		3.04	□□□□□ -1.92
MACF1-222	ENST00000494012	KRTAP6-1	Q3LI64	71 aa		2.99	□□□□□ -1.93
MACF1-222	ENST00000494012	KTN1-AS1	Q86SY8	53 aa		2.99	□□□□□ -1.93
MACF1-222	ENST00000494012	SYNE1	Q8NF91	8797 aa	Known RBP	2.96	□□□□□ -1.93
MACF1-222	ENST00000494012	KRTAP5-2	Q701N4	177 aa		2.88	□□□□□ -1.95
MACF1-222	ENST00000494012	MT3	P25713	68 aa		2.86	□□□□□ -1.95
MACF1-222	ENST00000494012	KRTAP6-2	Q3LI66	62 aa		2.84	□□□□□ -1.95
MACF1-222	ENST00000494012	MUC5AC	P98088	5654 aa		2.76	□□□□□ -1.97
MACF1-222	ENST00000494012	AHNAK	Q09666	5890 aa	Known RBP	2.75	□□□□□ -1.97
MACF1-222	ENST00000494012	KRTAP5-8	O75690	187 aa		2.74	□□□□□ -1.97
MACF1-222	ENST00000494012	MUC5B	Q9HC84	5762 aa	Predicted RBP	2.73	□□□□□ -1.97
MACF1-222	ENST00000494012	LCE1F	Q5T754	118 aa		2.72	□□□□□ -1.97
MACF1-222	ENST00000494012	KRTAP5-11	Q6L8G4	156 aa		2.71	□□□□□ -1.98
MACF1-222	ENST00000494012	OBSCN	Q5VST9	7968 aa		2.69	□□□□□ -1.98
MACF1-222	ENST00000494012	LCE1E	Q5T753	118 aa		2.68	□□□□□ -1.98
MACF1-222	ENST00000494012	LUZP6	Q538Z0	58 aa		2.63	□□□□□ -1.99
MACF1-222	ENST00000494012	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.59	□□□□□ -1.99
MACF1-222	ENST00000494012	NDUFAF8	A1L188	74 aa		2.55	□□□□□ -2
MACF1-222	ENST00000494012	KRTAP5-1	Q6L8H4	278 aa		2.53	□□□□□ -2
MACF1-222	ENST00000494012	LCE3D	Q9BYE3	92 aa		2.42	□□□□□ -2.02
MACF1-222	ENST00000494012	LCE1C	Q5T751	118 aa		2.34	□□□□□ -2.03
MACF1-222	ENST00000494012	LCE1B	Q5T7P3	118 aa		2.34	□□□□□ -2.03
MACF1-222	ENST00000494012	LCE3E	Q5T5B0	92 aa		2.31	□□□□□ -2.04
MACF1-222	ENST00000494012	KRTAP4-4	Q9BYR3	166 aa		2.16	□□□□□ -2.06
MACF1-222	ENST00000494012	KRTAP21-2	Q3LI59	83 aa		1.97	□□□□□ -2.09
MACF1-222	ENST00000494012	PHGR1	C9JFL3	82 aa		1.94	□□□□□ -2.1
MACF1-222	ENST00000494012	INE1	O15225	51 aa		1.85	□□□□□ -2.11
MACF1-222	ENST00000494012	PRM1	P04553	51 aa		1.82	□□□□□ -2.12
MACF1-222	ENST00000494012	MUC19	Q7Z5P9	8384 aa		1.66	□□□□□ -2.14
MACF1-222	ENST00000494012	KRTAP21-1	Q3LI58	79 aa		1.45	□□□□□ -2.18
MACF1-222	ENST00000494012	MUC16	Q8WXI7	14507 aa		1.2	□□□□□ -2.22

Retrieved 78 of 20,778 RNA–protein pairs in 81.7 ms