RNA–Protein interactions for RNA: ENST00000493177.1

MSH6-208, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 813 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-208ENST00000493177 LCE3AQ5TA76 89 aa5.11□□□□□ -1.59
MSH6-208ENST00000493177 KRTAP2-2Q9BYT5 123 aa5.05□□□□□ -1.6
MSH6-208ENST00000493177 KRTAP2-1Q9BYU5 128 aa5.05□□□□□ -1.6
MSH6-208ENST00000493177 KRTAP23-1A1A580 65 aa5□□□□□ -1.61
MSH6-208ENST00000493177 KRTAP19-5Q3LI72 72 aa5□□□□□ -1.61
MSH6-208ENST00000493177 LCE3BQ5TA77 95 aa5□□□□□ -1.61
MSH6-208ENST00000493177 KRTAP19-7Q3SYF9 63 aa4.97□□□□□ -1.61
MSH6-208ENST00000493177 PP632Q6XCG6 107 aa4.96□□□□□ -1.62
MSH6-208ENST00000493177 MT1EP04732 61 aa4.92□□□□□ -1.62
MSH6-208ENST00000493177 KRTAP12-3P60328 96 aa4.91□□□□□ -1.62
MSH6-208ENST00000493177 KRTAP19-3Q7Z4W3 81 aa4.86□□□□□ -1.63
MSH6-208ENST00000493177 PRAC1Q96KF2 57 aa4.86□□□□□ -1.63
MSH6-208ENST00000493177 H3BS24 57 aa4.83□□□□□ -1.64
MSH6-208ENST00000493177 LCE5AQ5TCM9 118 aa4.83□□□□□ -1.64
MSH6-208ENST00000493177 KTN1-AS1Q86SY8 53 aa4.83□□□□□ -1.64
MSH6-208ENST00000493177 MT1LQ93083 61 aa4.77□□□□□ -1.65
MSH6-208ENST00000493177 MT1GP13640 62 aa4.74□□□□□ -1.65
MSH6-208ENST00000493177 KRTAP15-1Q3LI76 137 aa4.74□□□□□ -1.65
MSH6-208ENST00000493177 DSTQ03001 7570 aaKnown RBP4.67□□□□□ -1.66
MSH6-208ENST00000493177 MT1MQ8N339 61 aa4.66□□□□□ -1.66
MSH6-208ENST00000493177 KRTAP4-9Q9BYQ8 210 aa4.62□□□□□ -1.67
MSH6-208ENST00000493177 KRTAP19-4Q3LI73 84 aa4.6□□□□□ -1.67
MSH6-208ENST00000493177 KRTAP4-7Q9BYR0 210 aa4.59□□□□□ -1.67
MSH6-208ENST00000493177 LCE3CQ5T5A8 94 aa4.56□□□□□ -1.68
MSH6-208ENST00000493177 KRTAP4-3Q9BYR4 195 aa4.55□□□□□ -1.68
MSH6-208ENST00000493177 LCE4AQ5TA78 99 aa4.53□□□□□ -1.68
MSH6-208ENST00000493177 MT4P47944 62 aa4.51□□□□□ -1.69
MSH6-208ENST00000493177 LCE1DQ5T752 114 aa4.51□□□□□ -1.69
MSH6-208ENST00000493177 A0A0A0MQY5 61 aa4.42□□□□□ -1.7
MSH6-208ENST00000493177 KRTAP5-4Q6L8H1 288 aa4.37□□□□□ -1.71
MSH6-208ENST00000493177 LOC100996750A0A140TA64 210 aa4.32□□□□□ -1.72
MSH6-208ENST00000493177 KRTAP4-6Q9BYQ5 205 aa4.32□□□□□ -1.72
MSH6-208ENST00000493177 HMCN1Q96RW7 5635 aa4.29□□□□□ -1.72
MSH6-208ENST00000493177 GPR98Q8WXG9 6306 aa4.29□□□□□ -1.72
MSH6-208ENST00000493177 KRTAP9-6A8MVA2 160 aa4.27□□□□□ -1.73
MSH6-208ENST00000493177 SPRR5A0A1B0GTR4 108 aa4.23□□□□□ -1.73
MSH6-208ENST00000493177 KRTAP5-5Q701N2 237 aaPredicted RBP4.22□□□□□ -1.73
MSH6-208ENST00000493177 KRTAP12-4P60329 112 aa4.2□□□□□ -1.74
MSH6-208ENST00000493177 KRTAP20-2Q3LI61 65 aa4.17□□□□□ -1.74
MSH6-208ENST00000493177 AHNAK2Q8IVF2 5795 aa4.16□□□□□ -1.74
MSH6-208ENST00000493177 KRTAP5-10Q6L8G5 202 aa4.13□□□□□ -1.75
MSH6-208ENST00000493177 KRTAP5-3Q6L8H2 238 aa4.08□□□□□ -1.76
MSH6-208ENST00000493177 MT1AP04731 61 aa4.07□□□□□ -1.76
MSH6-208ENST00000493177 LUZP6Q538Z0 58 aa4.04□□□□□ -1.76
MSH6-208ENST00000493177 KRTAP6-1Q3LI64 71 aa4.02□□□□□ -1.77
MSH6-208ENST00000493177 SYNE1Q8NF91 8797 aaKnown RBP4.01□□□□□ -1.77
MSH6-208ENST00000493177 KRTAP5-7Q6L8G8 165 aa3.98□□□□□ -1.77
MSH6-208ENST00000493177 KRTAP9-4Q9BYQ2 154 aa3.89□□□□□ -1.79
MSH6-208ENST00000493177 KRTAP5-2Q701N4 177 aa3.83□□□□□ -1.8
MSH6-208ENST00000493177 KRTAP4-11Q9BYQ6 195 aa3.8□□□□□ -1.8
MSH6-208ENST00000493177 KRTAP6-2Q3LI66 62 aa3.78□□□□□ -1.8
MSH6-208ENST00000493177 NDUFAF8A1L188 74 aa3.71□□□□□ -1.82
MSH6-208ENST00000493177 MT3P25713 68 aa3.71□□□□□ -1.82
MSH6-208ENST00000493177 KRTAP5-8O75690 187 aa3.65□□□□□ -1.83
MSH6-208ENST00000493177 KRTAP9-9Q9BYP9 154 aa3.53□□□□□ -1.84
MSH6-208ENST00000493177 KRTAP4-12Q9BQ66 201 aa3.52□□□□□ -1.85
MSH6-208ENST00000493177 OBSCNQ5VST9 7968 aa3.52□□□□□ -1.85
MSH6-208ENST00000493177 KRTAP5-1Q6L8H4 278 aa3.43□□□□□ -1.86
MSH6-208ENST00000493177 LCE3DQ9BYE3 92 aa3.39□□□□□ -1.87
MSH6-208ENST00000493177 MUC5BQ9HC84 5762 aaPredicted RBP3.37□□□□□ -1.87
MSH6-208ENST00000493177 MUC5ACP98088 5654 aa3.36□□□□□ -1.87
MSH6-208ENST00000493177 AHNAKQ09666 5890 aaKnown RBP3.36□□□□□ -1.87
MSH6-208ENST00000493177 LCE1EQ5T753 118 aa3.31□□□□□ -1.88
MSH6-208ENST00000493177 LCE3EQ5T5B0 92 aa3.27□□□□□ -1.89
MSH6-208ENST00000493177 LCE1BQ5T7P3 118 aa3.21□□□□□ -1.9
MSH6-208ENST00000493177 KRTAP4-2Q9BYR5 136 aa3.12□□□□□ -1.91
MSH6-208ENST00000493177 LCE1CQ5T751 118 aa3.07□□□□□ -1.92
MSH6-208ENST00000493177 INE1O15225 51 aa3.04□□□□□ -1.92
MSH6-208ENST00000493177 KRTAP5-11Q6L8G4 156 aa2.79□□□□□ -1.96
MSH6-208ENST00000493177 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.79□□□□□ -1.96
MSH6-208ENST00000493177 PRM1P04553 51 aa2.73□□□□□ -1.97
MSH6-208ENST00000493177 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
MSH6-208ENST00000493177 KRTAP21-2Q3LI59 83 aa2.62□□□□□ -1.99
MSH6-208ENST00000493177 PHGR1C9JFL3 82 aa2.47□□□□□ -2.01
MSH6-208ENST00000493177 KRTAP4-4Q9BYR3 166 aa2.41□□□□□ -2.02
MSH6-208ENST00000493177 MUC19Q7Z5P9 8384 aa2.17□□□□□ -2.06
MSH6-208ENST00000493177 KRTAP21-1Q3LI58 79 aa1.86□□□□□ -2.11
MSH6-208ENST00000493177 MUC16Q8WXI7 14507 aa1.55□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 11.5 ms