RNA–Protein interactions for RNA: ENST00000492451.1

PTPN7-215, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 5

Gene PTPN7, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-215	ENST00000492451	KRTAP19-5	Q3LI72	72 aa		5.09	□□□□□ -1.59
PTPN7-215	ENST00000492451	LCE3A	Q5TA76	89 aa		5.06	□□□□□ -1.6
PTPN7-215	ENST00000492451	KRTAP19-3	Q7Z4W3	81 aa		5.05	□□□□□ -1.6
PTPN7-215	ENST00000492451	LCE5A	Q5TCM9	118 aa		5.04	□□□□□ -1.6
PTPN7-215	ENST00000492451	BRK1	Q8WUW1	75 aa		5.04	□□□□□ -1.6
PTPN7-215	ENST00000492451	ROMO1	P60602	79 aa		5.03	□□□□□ -1.6
PTPN7-215	ENST00000492451	MT1G	P13640	62 aa		4.97	□□□□□ -1.61
PTPN7-215	ENST00000492451	KRTAP23-1	A1A580	65 aa		4.96	□□□□□ -1.62
PTPN7-215	ENST00000492451	PP632	Q6XCG6	107 aa		4.96	□□□□□ -1.62
PTPN7-215	ENST00000492451	DST	Q03001	7570 aa	Known RBP	4.94	□□□□□ -1.62
PTPN7-215	ENST00000492451	MT1L	Q93083	61 aa		4.92	□□□□□ -1.62
PTPN7-215	ENST00000492451	KRTAP12-3	P60328	96 aa		4.9	□□□□□ -1.63
PTPN7-215	ENST00000492451	KRTAP4-9	Q9BYQ8	210 aa		4.87	□□□□□ -1.63
PTPN7-215	ENST00000492451	MT1M	Q8N339	61 aa		4.86	□□□□□ -1.63
PTPN7-215	ENST00000492451	GPR98	Q8WXG9	6306 aa		4.84	□□□□□ -1.64
PTPN7-215	ENST00000492451	SVIP	Q8NHG7	77 aa		4.83	□□□□□ -1.64
PTPN7-215	ENST00000492451	PMAIP1	Q13794	54 aa		4.78	□□□□□ -1.64
PTPN7-215	ENST00000492451	KRTAP4-3	Q9BYR4	195 aa		4.74	□□□□□ -1.65
PTPN7-215	ENST00000492451	KRTAP19-4	Q3LI73	84 aa		4.73	□□□□□ -1.65
PTPN7-215	ENST00000492451	PRO0628	Q9UI54	55 aa		4.73	□□□□□ -1.65
PTPN7-215	ENST00000492451	LCE1D	Q5T752	114 aa		4.72	□□□□□ -1.65
PTPN7-215	ENST00000492451	MT4	P47944	62 aa		4.66	□□□□□ -1.66
PTPN7-215	ENST00000492451	KRTAP15-1	Q3LI76	137 aa		4.66	□□□□□ -1.66
PTPN7-215	ENST00000492451	KRTAP4-7	Q9BYR0	210 aa		4.66	□□□□□ -1.66
PTPN7-215	ENST00000492451	LCE4A	Q5TA78	99 aa		4.64	□□□□□ -1.67
PTPN7-215	ENST00000492451	HMCN1	Q96RW7	5635 aa		4.64	□□□□□ -1.67
PTPN7-215	ENST00000492451	KRTAP5-4	Q6L8H1	288 aa		4.6	□□□□□ -1.67
PTPN7-215	ENST00000492451	KRTAP4-6	Q9BYQ5	205 aa		4.55	□□□□□ -1.68
PTPN7-215	ENST00000492451	LCE3C	Q5T5A8	94 aa		4.53	□□□□□ -1.68
PTPN7-215	ENST00000492451	AHNAK2	Q8IVF2	5795 aa		4.49	□□□□□ -1.69
PTPN7-215	ENST00000492451	KRTAP5-5	Q701N2	237 aa	Predicted RBP	4.44	□□□□□ -1.7
PTPN7-215	ENST00000492451	KRTAP5-10	Q6L8G5	202 aa		4.43	□□□□□ -1.7
PTPN7-215	ENST00000492451	KTN1-AS1	Q86SY8	53 aa		4.43	□□□□□ -1.7
PTPN7-215	ENST00000492451	LOC100996750	A0A140TA64	210 aa		4.4	□□□□□ -1.71
PTPN7-215	ENST00000492451	PRAC1	Q96KF2	57 aa		4.4	□□□□□ -1.71
PTPN7-215	ENST00000492451	KRTAP20-2	Q3LI61	65 aa		4.34	□□□□□ -1.71
PTPN7-215	ENST00000492451	KRTAP12-4	P60329	112 aa		4.32	□□□□□ -1.72
PTPN7-215	ENST00000492451	KRTAP5-3	Q6L8H2	238 aa		4.31	□□□□□ -1.72
PTPN7-215	ENST00000492451	SPRR5	A0A1B0GTR4	108 aa		4.3	□□□□□ -1.72
PTPN7-215	ENST00000492451	SYNE1	Q8NF91	8797 aa	Known RBP	4.27	□□□□□ -1.73
PTPN7-215	ENST00000492451	KRTAP5-7	Q6L8G8	165 aa		4.24	□□□□□ -1.73
PTPN7-215	ENST00000492451	KRTAP9-6	A8MVA2	160 aa		4.22	□□□□□ -1.73
PTPN7-215	ENST00000492451	MT1A	P04731	61 aa		4.2	□□□□□ -1.74
PTPN7-215	ENST00000492451	KRTAP6-1	Q3LI64	71 aa		4.14	□□□□□ -1.75
PTPN7-215	ENST00000492451	KRTAP9-4	Q9BYQ2	154 aa		4.05	□□□□□ -1.76
PTPN7-215	ENST00000492451	KRTAP5-2	Q701N4	177 aa		4.02	□□□□□ -1.77
PTPN7-215	ENST00000492451	KRTAP4-11	Q9BYQ6	195 aa		3.97	□□□□□ -1.77
PTPN7-215	ENST00000492451	KRTAP6-2	Q3LI66	62 aa		3.94	□□□□□ -1.78
PTPN7-215	ENST00000492451	KRTAP5-8	O75690	187 aa		3.87	□□□□□ -1.79
PTPN7-215	ENST00000492451	MT3	P25713	68 aa		3.86	□□□□□ -1.79
PTPN7-215	ENST00000492451	LUZP6	Q538Z0	58 aa		3.85	□□□□□ -1.79
PTPN7-215	ENST00000492451	OBSCN	Q5VST9	7968 aa		3.77	□□□□□ -1.81
PTPN7-215	ENST00000492451	AHNAK	Q09666	5890 aa	Known RBP	3.7	□□□□□ -1.82
PTPN7-215	ENST00000492451	MUC5AC	P98088	5654 aa		3.7	□□□□□ -1.82
PTPN7-215	ENST00000492451	MUC5B	Q9HC84	5762 aa	Predicted RBP	3.69	□□□□□ -1.82
PTPN7-215	ENST00000492451	KRTAP5-1	Q6L8H4	278 aa		3.63	□□□□□ -1.83
PTPN7-215	ENST00000492451	KRTAP9-9	Q9BYP9	154 aa		3.61	□□□□□ -1.83
PTPN7-215	ENST00000492451	LCE1E	Q5T753	118 aa		3.51	□□□□□ -1.85
PTPN7-215	ENST00000492451		H3BS24	57 aa		3.4	□□□□□ -1.87
PTPN7-215	ENST00000492451	NDUFAF8	A1L188	74 aa		3.33	□□□□□ -1.88
PTPN7-215	ENST00000492451	LCE3D	Q9BYE3	92 aa		3.33	□□□□□ -1.88
PTPN7-215	ENST00000492451	KRTAP4-2	Q9BYR5	136 aa		3.28	□□□□□ -1.88
PTPN7-215	ENST00000492451	LCE1B	Q5T7P3	118 aa		3.26	□□□□□ -1.89
PTPN7-215	ENST00000492451	LCE1C	Q5T751	118 aa		3.25	□□□□□ -1.89
PTPN7-215	ENST00000492451	LCE3E	Q5T5B0	92 aa		3.2	□□□□□ -1.9
PTPN7-215	ENST00000492451	KRTAP4-12	Q9BQ66	201 aa		3.01	□□□□□ -1.93
PTPN7-215	ENST00000492451	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.97	□□□□□ -1.93
PTPN7-215	ENST00000492451		A0A0A0MQY5	61 aa		2.93	□□□□□ -1.94
PTPN7-215	ENST00000492451	KRTAP5-11	Q6L8G4	156 aa		2.91	□□□□□ -1.94
PTPN7-215	ENST00000492451	INE1	O15225	51 aa		2.83	□□□□□ -1.96
PTPN7-215	ENST00000492451	LCE1F	Q5T754	118 aa		2.82	□□□□□ -1.96
PTPN7-215	ENST00000492451	KRTAP21-2	Q3LI59	83 aa		2.73	□□□□□ -1.97
PTPN7-215	ENST00000492451	PHGR1	C9JFL3	82 aa		2.56	□□□□□ -2
PTPN7-215	ENST00000492451	PRM1	P04553	51 aa		2.54	□□□□□ -2
PTPN7-215	ENST00000492451	KRTAP4-4	Q9BYR3	166 aa		2.5	□□□□□ -2.01
PTPN7-215	ENST00000492451	MUC19	Q7Z5P9	8384 aa		2.36	□□□□□ -2.03
PTPN7-215	ENST00000492451	KRTAP21-1	Q3LI58	79 aa		1.91	□□□□□ -2.1
PTPN7-215	ENST00000492451	MUC16	Q8WXI7	14507 aa		1.62	□□□□□ -2.15

Retrieved 78 of 20,778 RNA–protein pairs in 146.9 ms