RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 LCE4AQ5TA78 99 aa3.93□□□□□ -1.78
HDAC3-212ENST00000492407 KRTAP2-4Q9BYR9 128 aa3.93□□□□□ -1.78
HDAC3-212ENST00000492407 KRTAP19-4Q3LI73 84 aa3.92□□□□□ -1.78
HDAC3-212ENST00000492407 KRTAP4-2Q9BYR5 136 aa3.9□□□□□ -1.79
HDAC3-212ENST00000492407 KRTAP12-2P59991 146 aa3.87□□□□□ -1.79
HDAC3-212ENST00000492407 SPRR2FQ96RM1 72 aa3.85□□□□□ -1.79
HDAC3-212ENST00000492407 KRTAP4-11Q9BYQ6 195 aa3.84□□□□□ -1.79
HDAC3-212ENST00000492407 SPRR2EP22531 72 aa3.83□□□□□ -1.8
HDAC3-212ENST00000492407 SPRR2BP35325 72 aa3.83□□□□□ -1.8
HDAC3-212ENST00000492407 SPRR2AP35326 72 aa3.83□□□□□ -1.8
HDAC3-212ENST00000492407 MT1XP80297 61 aa3.83□□□□□ -1.8
HDAC3-212ENST00000492407 C10orf95Q9H7T3 257 aa3.82□□□□□ -1.8
HDAC3-212ENST00000492407 KRTAP8-1Q8IUC2 63 aa3.8□□□□□ -1.8
HDAC3-212ENST00000492407 KRTAP2-2Q9BYT5 123 aa3.8□□□□□ -1.8
HDAC3-212ENST00000492407 KRTAP2-1Q9BYU5 128 aa3.8□□□□□ -1.8
HDAC3-212ENST00000492407 LCE1AQ5T7P2 110 aa3.78□□□□□ -1.8
HDAC3-212ENST00000492407 LCE5AQ5TCM9 118 aa3.77□□□□□ -1.81
HDAC3-212ENST00000492407 PP632Q6XCG6 107 aa3.77□□□□□ -1.81
HDAC3-212ENST00000492407 M0QZ58 72 aa3.71□□□□□ -1.82
HDAC3-212ENST00000492407 SPRR2DP22532 72 aa3.71□□□□□ -1.82
HDAC3-212ENST00000492407 SPRR5A0A1B0GTR4 108 aa3.67□□□□□ -1.82
HDAC3-212ENST00000492407 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
HDAC3-212ENST00000492407 KRTAP10-7P60409 375 aaPredicted RBP3.62□□□□□ -1.83
HDAC3-212ENST00000492407 GPR98Q8WXG9 6306 aa3.53□□□□□ -1.84
HDAC3-212ENST00000492407 KRTAP5-3Q6L8H2 238 aa3.48□□□□□ -1.85
HDAC3-212ENST00000492407 KRTAP12-1P59990 96 aa3.47□□□□□ -1.85
HDAC3-212ENST00000492407 DSTQ03001 7570 aaKnown RBP3.46□□□□□ -1.86
HDAC3-212ENST00000492407 A0A0D9SG42 100 aa3.44□□□□□ -1.86
HDAC3-212ENST00000492407 KRTAP13-4Q3LI77 160 aa3.44□□□□□ -1.86
HDAC3-212ENST00000492407 KRTAP19-7Q3SYF9 63 aa3.43□□□□□ -1.86
HDAC3-212ENST00000492407 KRTAP19-3Q7Z4W3 81 aa3.43□□□□□ -1.86
HDAC3-212ENST00000492407 MT1EP04732 61 aa3.41□□□□□ -1.86
HDAC3-212ENST00000492407 MT1GP13640 62 aa3.36□□□□□ -1.87
HDAC3-212ENST00000492407 HMCN1Q96RW7 5635 aa3.32□□□□□ -1.88
HDAC3-212ENST00000492407 KRTAP19-5Q3LI72 72 aa3.29□□□□□ -1.88
HDAC3-212ENST00000492407 MT1MQ8N339 61 aa3.25□□□□□ -1.89
HDAC3-212ENST00000492407 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
HDAC3-212ENST00000492407 AHNAK2Q8IVF2 5795 aa3.23□□□□□ -1.89
HDAC3-212ENST00000492407 MT1LQ93083 61 aa3.23□□□□□ -1.89
HDAC3-212ENST00000492407 MT4P47944 62 aa3.22□□□□□ -1.89
HDAC3-212ENST00000492407 KRTAP5-10Q6L8G5 202 aa3.17□□□□□ -1.9
HDAC3-212ENST00000492407 TNP1P09430 55 aa3.15□□□□□ -1.91
HDAC3-212ENST00000492407 LCE3AQ5TA76 89 aa3.12□□□□□ -1.91
HDAC3-212ENST00000492407 KRTAP4-3Q9BYR4 195 aa3.12□□□□□ -1.91
HDAC3-212ENST00000492407 KRTAP5-7Q6L8G8 165 aa3.1□□□□□ -1.91
HDAC3-212ENST00000492407 KRTAP12-3P60328 96 aa3.04□□□□□ -1.92
HDAC3-212ENST00000492407 KRTAP20-2Q3LI61 65 aa3.03□□□□□ -1.92
HDAC3-212ENST00000492407 KRTAP5-5Q701N2 237 aaPredicted RBP3.02□□□□□ -1.93
HDAC3-212ENST00000492407 KRTAP12-4P60329 112 aa3□□□□□ -1.93
HDAC3-212ENST00000492407 MT3P25713 68 aa2.89□□□□□ -1.95
HDAC3-212ENST00000492407 SYNE1Q8NF91 8797 aaKnown RBP2.86□□□□□ -1.95
HDAC3-212ENST00000492407 LCE3CQ5T5A8 94 aa2.8□□□□□ -1.96
HDAC3-212ENST00000492407 KRTAP5-2Q701N4 177 aa2.79□□□□□ -1.96
HDAC3-212ENST00000492407 MT1AP04731 61 aa2.77□□□□□ -1.97
HDAC3-212ENST00000492407 AHNAKQ09666 5890 aaKnown RBP2.77□□□□□ -1.97
HDAC3-212ENST00000492407 MUC5BQ9HC84 5762 aaPredicted RBP2.72□□□□□ -1.97
HDAC3-212ENST00000492407 KRTAP6-1Q3LI64 71 aa2.72□□□□□ -1.97
HDAC3-212ENST00000492407 MUC5ACP98088 5654 aa2.71□□□□□ -1.97
HDAC3-212ENST00000492407 KRTAP5-8O75690 187 aa2.71□□□□□ -1.98
HDAC3-212ENST00000492407 LCE1FQ5T754 118 aa2.71□□□□□ -1.98
HDAC3-212ENST00000492407 KRTAP6-2Q3LI66 62 aa2.63□□□□□ -1.99
HDAC3-212ENST00000492407 LCE1EQ5T753 118 aa2.62□□□□□ -1.99
HDAC3-212ENST00000492407 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.61□□□□□ -1.99
HDAC3-212ENST00000492407 OBSCNQ5VST9 7968 aa2.59□□□□□ -1.99
HDAC3-212ENST00000492407 KRTAP9-6A8MVA2 160 aa2.59□□□□□ -1.99
HDAC3-212ENST00000492407 KRTAP5-11Q6L8G4 156 aa2.57□□□□□ -2
HDAC3-212ENST00000492407 KRTAP5-1Q6L8H4 278 aa2.52□□□□□ -2.01
HDAC3-212ENST00000492407 LCE1CQ5T751 118 aa2.23□□□□□ -2.05
HDAC3-212ENST00000492407 LCE1BQ5T7P3 118 aa2.23□□□□□ -2.05
HDAC3-212ENST00000492407 PRM1P04553 51 aa2.22□□□□□ -2.05
HDAC3-212ENST00000492407 LCE3EQ5T5B0 92 aa2.22□□□□□ -2.05
HDAC3-212ENST00000492407 KRTAP4-4Q9BYR3 166 aa2.17□□□□□ -2.06
HDAC3-212ENST00000492407 LCE3DQ9BYE3 92 aa2.15□□□□□ -2.07
HDAC3-212ENST00000492407 PHGR1C9JFL3 82 aa1.84□□□□□ -2.11
HDAC3-212ENST00000492407 KRTAP21-2Q3LI59 83 aa1.81□□□□□ -2.12
HDAC3-212ENST00000492407 KRTAP21-1Q3LI58 79 aa1.66□□□□□ -2.14
HDAC3-212ENST00000492407 MUC19Q7Z5P9 8384 aa1.58□□□□□ -2.16
HDAC3-212ENST00000492407 MUC16Q8WXI7 14507 aa1.1□□□□□ -2.23
Retrieved 78 of 20,778 RNA–protein pairs in 69.8 ms