RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	KRTAP2-1	Q9BYU5	128 aa		9.37	□□□□□ -0.91
TTC3-223	ENST00000492275	LCE3B	Q5TA77	95 aa		9.34	□□□□□ -0.91
TTC3-223	ENST00000492275	KRTAP25-1	Q3LHN0	102 aa		9.24	□□□□□ -0.93
TTC3-223	ENST00000492275	MT1G	P13640	62 aa		9.23	□□□□□ -0.93
TTC3-223	ENST00000492275	MT1L	Q93083	61 aa		9.22	□□□□□ -0.93
TTC3-223	ENST00000492275	KRTAP12-3	P60328	96 aa		9.11	□□□□□ -0.95
TTC3-223	ENST00000492275	PP632	Q6XCG6	107 aa		9.1	□□□□□ -0.95
TTC3-223	ENST00000492275	MT1M	Q8N339	61 aa		9.09	□□□□□ -0.95
TTC3-223	ENST00000492275	CDC42SE1	Q9NRR8	79 aa		9.06	□□□□□ -0.96
TTC3-223	ENST00000492275	DST	Q03001	7570 aa	Known RBP	9.02	□□□□□ -0.97
TTC3-223	ENST00000492275	KRTAP23-1	A1A580	65 aa		8.93	□□□□□ -0.98
TTC3-223	ENST00000492275	KRTAP4-3	Q9BYR4	195 aa		8.91	□□□□□ -0.98
TTC3-223	ENST00000492275	ROMO1	P60602	79 aa		8.9	□□□□□ -0.98
TTC3-223	ENST00000492275	KRTAP4-7	Q9BYR0	210 aa		8.82	□□□□□ -1
TTC3-223	ENST00000492275	KRTAP15-1	Q3LI76	137 aa		8.64	□□□□□ -1.03
TTC3-223	ENST00000492275	KRTAP4-9	Q9BYQ8	210 aa		8.61	□□□□□ -1.03
TTC3-223	ENST00000492275	KRTAP19-4	Q3LI73	84 aa		8.59	□□□□□ -1.03
TTC3-223	ENST00000492275	LCE4A	Q5TA78	99 aa		8.53	□□□□□ -1.04
TTC3-223	ENST00000492275	KRTAP5-4	Q6L8H1	288 aa		8.47	□□□□□ -1.05
TTC3-223	ENST00000492275	LCE1D	Q5T752	114 aa		8.45	□□□□□ -1.06
TTC3-223	ENST00000492275	BRK1	Q8WUW1	75 aa		8.45	□□□□□ -1.06
TTC3-223	ENST00000492275	LCE3C	Q5T5A8	94 aa		8.44	□□□□□ -1.06
TTC3-223	ENST00000492275	MT4	P47944	62 aa		8.4	□□□□□ -1.06
TTC3-223	ENST00000492275	LOC100996750	A0A140TA64	210 aa		8.33	□□□□□ -1.08
TTC3-223	ENST00000492275	KRTAP5-5	Q701N2	237 aa	Predicted RBP	8.32	□□□□□ -1.08
TTC3-223	ENST00000492275	KRTAP4-6	Q9BYQ5	205 aa		8.24	□□□□□ -1.09
TTC3-223	ENST00000492275	HMCN1	Q96RW7	5635 aa		8.21	□□□□□ -1.09
TTC3-223	ENST00000492275	KRTAP9-6	A8MVA2	160 aa		8	□□□□□ -1.13
TTC3-223	ENST00000492275	PMAIP1	Q13794	54 aa		7.97	□□□□□ -1.13
TTC3-223	ENST00000492275	KRTAP12-4	P60329	112 aa		7.96	□□□□□ -1.14
TTC3-223	ENST00000492275	KRTAP20-2	Q3LI61	65 aa		7.96	□□□□□ -1.14
TTC3-223	ENST00000492275	SPRR5	A0A1B0GTR4	108 aa		7.95	□□□□□ -1.14
TTC3-223	ENST00000492275	GPR98	Q8WXG9	6306 aa		7.92	□□□□□ -1.14
TTC3-223	ENST00000492275	SYNE1	Q8NF91	8797 aa	Known RBP	7.86	□□□□□ -1.15
TTC3-223	ENST00000492275	MT1A	P04731	61 aa		7.84	□□□□□ -1.15
TTC3-223	ENST00000492275	AHNAK2	Q8IVF2	5795 aa		7.83	□□□□□ -1.16
TTC3-223	ENST00000492275	KRTAP6-1	Q3LI64	71 aa		7.79	□□□□□ -1.16
TTC3-223	ENST00000492275	KRTAP5-3	Q6L8H2	238 aa		7.74	□□□□□ -1.17
TTC3-223	ENST00000492275	KRTAP5-10	Q6L8G5	202 aa		7.67	□□□□□ -1.18
TTC3-223	ENST00000492275	PRAC1	Q96KF2	57 aa		7.64	□□□□□ -1.19
TTC3-223	ENST00000492275	PRO0628	Q9UI54	55 aa		7.64	□□□□□ -1.19
TTC3-223	ENST00000492275	KRTAP9-4	Q9BYQ2	154 aa		7.56	□□□□□ -1.2
TTC3-223	ENST00000492275	KRTAP5-2	Q701N4	177 aa		7.49	□□□□□ -1.21
TTC3-223	ENST00000492275	KRTAP6-2	Q3LI66	62 aa		7.36	□□□□□ -1.23
TTC3-223	ENST00000492275	KRTAP5-7	Q6L8G8	165 aa		7.32	□□□□□ -1.24
TTC3-223	ENST00000492275	KTN1-AS1	Q86SY8	53 aa		7.23	□□□□□ -1.25
TTC3-223	ENST00000492275	KRTAP4-11	Q9BYQ6	195 aa		7.18	□□□□□ -1.26
TTC3-223	ENST00000492275	MT3	P25713	68 aa		7.14	□□□□□ -1.27
TTC3-223	ENST00000492275	KRTAP5-8	O75690	187 aa		6.95	□□□□□ -1.3
TTC3-223	ENST00000492275	SVIP	Q8NHG7	77 aa		6.86	□□□□□ -1.31
TTC3-223	ENST00000492275	OBSCN	Q5VST9	7968 aa		6.81	□□□□□ -1.32
TTC3-223	ENST00000492275	KRTAP5-1	Q6L8H4	278 aa		6.65	□□□□□ -1.34
TTC3-223	ENST00000492275	KRTAP4-12	Q9BQ66	201 aa		6.63	□□□□□ -1.35
TTC3-223	ENST00000492275		H3BS24	57 aa		6.54	□□□□□ -1.36
TTC3-223	ENST00000492275	LCE1E	Q5T753	118 aa		6.48	□□□□□ -1.37
TTC3-223	ENST00000492275	KRTAP9-9	Q9BYP9	154 aa		6.48	□□□□□ -1.37
TTC3-223	ENST00000492275	MUC5AC	P98088	5654 aa		6.43	□□□□□ -1.38
TTC3-223	ENST00000492275	MUC5B	Q9HC84	5762 aa	Predicted RBP	6.33	□□□□□ -1.4
TTC3-223	ENST00000492275	LUZP6	Q538Z0	58 aa		6.32	□□□□□ -1.4
TTC3-223	ENST00000492275	AHNAK	Q09666	5890 aa	Known RBP	6.28	□□□□□ -1.4
TTC3-223	ENST00000492275	LCE3D	Q9BYE3	92 aa		6.13	□□□□□ -1.43
TTC3-223	ENST00000492275	KRTAP4-2	Q9BYR5	136 aa		6.12	□□□□□ -1.43
TTC3-223	ENST00000492275	LCE1B	Q5T7P3	118 aa		6.07	□□□□□ -1.44
TTC3-223	ENST00000492275	LCE1C	Q5T751	118 aa		6.01	□□□□□ -1.45
TTC3-223	ENST00000492275	LCE3E	Q5T5B0	92 aa		5.84	□□□□□ -1.47
TTC3-223	ENST00000492275	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	5.52	□□□□□ -1.53
TTC3-223	ENST00000492275	KRTAP5-11	Q6L8G4	156 aa		5.41	□□□□□ -1.54
TTC3-223	ENST00000492275	NDUFAF8	A1L188	74 aa		5.4	□□□□□ -1.54
TTC3-223	ENST00000492275	LCE1F	Q5T754	118 aa		5.17	□□□□□ -1.58
TTC3-223	ENST00000492275	KRTAP21-2	Q3LI59	83 aa		5.14	□□□□□ -1.59
TTC3-223	ENST00000492275	PHGR1	C9JFL3	82 aa		4.67	□□□□□ -1.66
TTC3-223	ENST00000492275	KRTAP4-4	Q9BYR3	166 aa		4.65	□□□□□ -1.67
TTC3-223	ENST00000492275	PRM1	P04553	51 aa		4.58	□□□□□ -1.68
TTC3-223	ENST00000492275		A0A0A0MQY5	61 aa		4.37	□□□□□ -1.71
TTC3-223	ENST00000492275	INE1	O15225	51 aa		4.36	□□□□□ -1.71
TTC3-223	ENST00000492275	MUC19	Q7Z5P9	8384 aa		4.17	□□□□□ -1.74
TTC3-223	ENST00000492275	KRTAP21-1	Q3LI58	79 aa		3.34	□□□□□ -1.87
TTC3-223	ENST00000492275	MUC16	Q8WXI7	14507 aa		3.04	□□□□□ -1.92

Retrieved 78 of 20,778 RNA–protein pairs in 167.7 ms