RNA–Protein interactions for RNA: ENST00000490081.5

HDAC1-210, Transcript of histone deacetylase 1, humanhuman

TSL 3

Gene HDAC1, Length 1,047 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-210ENST00000490081 MDN1Q9NU22 5596 aa4.9□□□□□ -1.63
HDAC1-210ENST00000490081 TNP1P09430 55 aa4.84□□□□□ -1.63
HDAC1-210ENST00000490081 KRTAP8-1Q8IUC2 63 aa4.84□□□□□ -1.63
HDAC1-210ENST00000490081 BRK1Q8WUW1 75 aa4.82□□□□□ -1.64
HDAC1-210ENST00000490081 KRTAP2-3P0C7H8 128 aa4.81□□□□□ -1.64
HDAC1-210ENST00000490081 KRTAP2-4Q9BYR9 128 aa4.81□□□□□ -1.64
HDAC1-210ENST00000490081 SPRR2FQ96RM1 72 aa4.78□□□□□ -1.64
HDAC1-210ENST00000490081 SPRR2EP22531 72 aa4.76□□□□□ -1.65
HDAC1-210ENST00000490081 SPRR2BP35325 72 aa4.76□□□□□ -1.65
HDAC1-210ENST00000490081 SPRR2AP35326 72 aa4.76□□□□□ -1.65
HDAC1-210ENST00000490081 KRTAP25-1Q3LHN0 102 aa4.76□□□□□ -1.65
HDAC1-210ENST00000490081 LCE1AQ5T7P2 110 aa4.72□□□□□ -1.65
HDAC1-210ENST00000490081 PRO0628Q9UI54 55 aa4.72□□□□□ -1.65
HDAC1-210ENST00000490081 KRTAP23-1A1A580 65 aa4.68□□□□□ -1.66
HDAC1-210ENST00000490081 ROMO1P60602 79 aa4.68□□□□□ -1.66
HDAC1-210ENST00000490081 KRTAP19-7Q3SYF9 63 aa4.67□□□□□ -1.66
HDAC1-210ENST00000490081 LCE3AQ5TA76 89 aa4.66□□□□□ -1.66
HDAC1-210ENST00000490081 KRTAP2-2Q9BYT5 123 aa4.65□□□□□ -1.67
HDAC1-210ENST00000490081 KRTAP2-1Q9BYU5 128 aa4.65□□□□□ -1.67
HDAC1-210ENST00000490081 MT1EP04732 61 aa4.61□□□□□ -1.67
HDAC1-210ENST00000490081 KRTAP19-5Q3LI72 72 aa4.61□□□□□ -1.67
HDAC1-210ENST00000490081 SPRR2DP22532 72 aa4.6□□□□□ -1.67
HDAC1-210ENST00000490081 PMAIP1Q13794 54 aa4.56□□□□□ -1.68
HDAC1-210ENST00000490081 PP632Q6XCG6 107 aa4.54□□□□□ -1.68
HDAC1-210ENST00000490081 KRTAP12-3P60328 96 aa4.52□□□□□ -1.69
HDAC1-210ENST00000490081 KRTAP19-3Q7Z4W3 81 aa4.51□□□□□ -1.69
HDAC1-210ENST00000490081 MT1GP13640 62 aa4.48□□□□□ -1.69
HDAC1-210ENST00000490081 MT1LQ93083 61 aa4.46□□□□□ -1.7
HDAC1-210ENST00000490081 KTN1-AS1Q86SY8 53 aa4.37□□□□□ -1.71
HDAC1-210ENST00000490081 MT1MQ8N339 61 aa4.36□□□□□ -1.71
HDAC1-210ENST00000490081 KRTAP15-1Q3LI76 137 aa4.35□□□□□ -1.71
HDAC1-210ENST00000490081 GPR98Q8WXG9 6306 aa4.31□□□□□ -1.72
HDAC1-210ENST00000490081 PRAC1Q96KF2 57 aa4.28□□□□□ -1.72
HDAC1-210ENST00000490081 DSTQ03001 7570 aaKnown RBP4.28□□□□□ -1.72
HDAC1-210ENST00000490081 LCE3CQ5T5A8 94 aa4.21□□□□□ -1.74
HDAC1-210ENST00000490081 KRTAP4-3Q9BYR4 195 aa4.18□□□□□ -1.74
HDAC1-210ENST00000490081 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
HDAC1-210ENST00000490081 MT4P47944 62 aa4.03□□□□□ -1.76
HDAC1-210ENST00000490081 HMCN1Q96RW7 5635 aa4.02□□□□□ -1.77
HDAC1-210ENST00000490081 KRTAP5-4Q6L8H1 288 aa4.02□□□□□ -1.77
HDAC1-210ENST00000490081 KRTAP5-5Q701N2 237 aaPredicted RBP4□□□□□ -1.77
HDAC1-210ENST00000490081 AHNAK2Q8IVF2 5795 aa3.95□□□□□ -1.78
HDAC1-210ENST00000490081 KRTAP9-6A8MVA2 160 aa3.94□□□□□ -1.78
HDAC1-210ENST00000490081 KRTAP5-10Q6L8G5 202 aa3.94□□□□□ -1.78
HDAC1-210ENST00000490081 SPRR5A0A1B0GTR4 108 aa3.87□□□□□ -1.79
HDAC1-210ENST00000490081 MT1AP04731 61 aa3.82□□□□□ -1.8
HDAC1-210ENST00000490081 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.82□□□□□ -1.8
HDAC1-210ENST00000490081 KRTAP12-4P60329 112 aa3.8□□□□□ -1.8
HDAC1-210ENST00000490081 KRTAP5-7Q6L8G8 165 aa3.8□□□□□ -1.8
HDAC1-210ENST00000490081 KRTAP20-2Q3LI61 65 aa3.78□□□□□ -1.8
HDAC1-210ENST00000490081 SYNE1Q8NF91 8797 aaKnown RBP3.77□□□□□ -1.81
HDAC1-210ENST00000490081 KRTAP5-11Q6L8G4 156 aa3.75□□□□□ -1.81
HDAC1-210ENST00000490081 KRTAP6-1Q3LI64 71 aa3.74□□□□□ -1.81
HDAC1-210ENST00000490081 KRTAP5-2Q701N4 177 aa3.58□□□□□ -1.84
HDAC1-210ENST00000490081 KRTAP6-2Q3LI66 62 aa3.5□□□□□ -1.85
HDAC1-210ENST00000490081 LUZP6Q538Z0 58 aa3.49□□□□□ -1.85
HDAC1-210ENST00000490081 MT3P25713 68 aa3.48□□□□□ -1.85
HDAC1-210ENST00000490081 LCE1EQ5T753 118 aa3.45□□□□□ -1.86
HDAC1-210ENST00000490081 KRTAP5-8O75690 187 aa3.39□□□□□ -1.87
HDAC1-210ENST00000490081 NDUFAF8A1L188 74 aa3.35□□□□□ -1.87
HDAC1-210ENST00000490081 KRTAP5-1Q6L8H4 278 aa3.32□□□□□ -1.88
HDAC1-210ENST00000490081 AHNAKQ09666 5890 aaKnown RBP3.27□□□□□ -1.89
HDAC1-210ENST00000490081 MUC5ACP98088 5654 aa3.26□□□□□ -1.89
HDAC1-210ENST00000490081 OBSCNQ5VST9 7968 aa3.25□□□□□ -1.89
HDAC1-210ENST00000490081 MUC5BQ9HC84 5762 aaPredicted RBP3.24□□□□□ -1.89
HDAC1-210ENST00000490081 KRTAP4-4Q9BYR3 166 aa3.19□□□□□ -1.9
HDAC1-210ENST00000490081 LCE3DQ9BYE3 92 aa3.1□□□□□ -1.91
HDAC1-210ENST00000490081 LCE3EQ5T5B0 92 aa2.98□□□□□ -1.93
HDAC1-210ENST00000490081 LCE1CQ5T751 118 aa2.93□□□□□ -1.94
HDAC1-210ENST00000490081 LCE1BQ5T7P3 118 aa2.93□□□□□ -1.94
HDAC1-210ENST00000490081 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
HDAC1-210ENST00000490081 INE1O15225 51 aa2.8□□□□□ -1.96
HDAC1-210ENST00000490081 KRTAP21-2Q3LI59 83 aa2.49□□□□□ -2.01
HDAC1-210ENST00000490081 PRM1P04553 51 aa2.37□□□□□ -2.03
HDAC1-210ENST00000490081 PHGR1C9JFL3 82 aa2.26□□□□□ -2.05
HDAC1-210ENST00000490081 MUC19Q7Z5P9 8384 aa1.97□□□□□ -2.09
HDAC1-210ENST00000490081 KRTAP21-1Q3LI58 79 aa1.72□□□□□ -2.13
HDAC1-210ENST00000490081 MUC16Q8WXI7 14507 aa1.47□□□□□ -2.17
Retrieved 78 of 20,778 RNA–protein pairs in 13.6 ms