RNA–Protein interactions for RNA: ENST00000487026.5

LIME1-206, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LIME1, Length 805 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-206ENST00000487026 PP632Q6XCG6 107 aa8.77□□□□□ -1.01
LIME1-206ENST00000487026 LCE1DQ5T752 114 aa8.74□□□□□ -1.01
LIME1-206ENST00000487026 MT1MQ8N339 61 aa8.74□□□□□ -1.01
LIME1-206ENST00000487026 A6NED7 52 aa8.72□□□□□ -1.01
LIME1-206ENST00000487026 MT1LQ93083 61 aa8.72□□□□□ -1.01
LIME1-206ENST00000487026 K7ERS5 55 aa8.64□□□□□ -1.03
LIME1-206ENST00000487026 MT4P47944 62 aa8.64□□□□□ -1.03
LIME1-206ENST00000487026 LCE3AQ5TA76 89 aa8.64□□□□□ -1.03
LIME1-206ENST00000487026 LCE4AQ5TA78 99 aa8.63□□□□□ -1.03
LIME1-206ENST00000487026 KRTAP4-3Q9BYR4 195 aa8.62□□□□□ -1.03
LIME1-206ENST00000487026 C10orf95Q9H7T3 257 aa8.62□□□□□ -1.03
LIME1-206ENST00000487026 HMCN1Q96RW7 5635 aa8.61□□□□□ -1.03
LIME1-206ENST00000487026 TNP1P09430 55 aa8.56□□□□□ -1.04
LIME1-206ENST00000487026 KRTAP5-4Q6L8H1 288 aa8.43□□□□□ -1.06
LIME1-206ENST00000487026 CDC42SE1Q9NRR8 79 aa8.43□□□□□ -1.06
LIME1-206ENST00000487026 AHNAK2Q8IVF2 5795 aa8.39□□□□□ -1.07
LIME1-206ENST00000487026 KRTAP4-6Q9BYQ5 205 aa8.38□□□□□ -1.07
LIME1-206ENST00000487026 KRTAP4-7Q9BYR0 210 aa8.35□□□□□ -1.07
LIME1-206ENST00000487026 KRTAP12-3P60328 96 aa8.28□□□□□ -1.08
LIME1-206ENST00000487026 KRTAP5-10Q6L8G5 202 aa8.22□□□□□ -1.09
LIME1-206ENST00000487026 KRTAP25-1Q3LHN0 102 aa8.14□□□□□ -1.11
LIME1-206ENST00000487026 BRK1Q8WUW1 75 aa8.12□□□□□ -1.11
LIME1-206ENST00000487026 ROMO1P60602 79 aa8.07□□□□□ -1.12
LIME1-206ENST00000487026 KRTAP5-5Q701N2 237 aaPredicted RBP8.02□□□□□ -1.13
LIME1-206ENST00000487026 KRTAP20-2Q3LI61 65 aa8□□□□□ -1.13
LIME1-206ENST00000487026 KRTAP5-3Q6L8H2 238 aa7.98□□□□□ -1.13
LIME1-206ENST00000487026 LOC100996750A0A140TA64 210 aa7.92□□□□□ -1.14
LIME1-206ENST00000487026 KRTAP5-7Q6L8G8 165 aa7.91□□□□□ -1.14
LIME1-206ENST00000487026 SPRR5A0A1B0GTR4 108 aa7.9□□□□□ -1.14
LIME1-206ENST00000487026 KRTAP23-1A1A580 65 aa7.89□□□□□ -1.15
LIME1-206ENST00000487026 KRTAP12-4P60329 112 aa7.86□□□□□ -1.15
LIME1-206ENST00000487026 SYNE1Q8NF91 8797 aaKnown RBP7.79□□□□□ -1.16
LIME1-206ENST00000487026 PMAIP1Q13794 54 aa7.71□□□□□ -1.18
LIME1-206ENST00000487026 KRTAP19-4Q3LI73 84 aa7.69□□□□□ -1.18
LIME1-206ENST00000487026 KRTAP15-1Q3LI76 137 aa7.65□□□□□ -1.18
LIME1-206ENST00000487026 PRO0628Q9UI54 55 aa7.64□□□□□ -1.19
LIME1-206ENST00000487026 LCE3CQ5T5A8 94 aa7.61□□□□□ -1.19
LIME1-206ENST00000487026 KRTAP6-1Q3LI64 71 aa7.41□□□□□ -1.22
LIME1-206ENST00000487026 MT1AP04731 61 aa7.39□□□□□ -1.23
LIME1-206ENST00000487026 KRTAP4-11Q9BYQ6 195 aa7.36□□□□□ -1.23
LIME1-206ENST00000487026 KRTAP5-2Q701N4 177 aa7.35□□□□□ -1.23
LIME1-206ENST00000487026 KRTAP9-6A8MVA2 160 aa7.23□□□□□ -1.25
LIME1-206ENST00000487026 KRTAP9-4Q9BYQ2 154 aa7.19□□□□□ -1.26
LIME1-206ENST00000487026 KTN1-AS1Q86SY8 53 aa7.16□□□□□ -1.26
LIME1-206ENST00000487026 PRAC1Q96KF2 57 aa7.16□□□□□ -1.26
LIME1-206ENST00000487026 KRTAP6-2Q3LI66 62 aa7.13□□□□□ -1.27
LIME1-206ENST00000487026 KRTAP5-8O75690 187 aa7.12□□□□□ -1.27
LIME1-206ENST00000487026 AHNAKQ09666 5890 aaKnown RBP6.95□□□□□ -1.3
LIME1-206ENST00000487026 MUC5BQ9HC84 5762 aaPredicted RBP6.95□□□□□ -1.3
LIME1-206ENST00000487026 OBSCNQ5VST9 7968 aa6.94□□□□□ -1.3
LIME1-206ENST00000487026 MUC5ACP98088 5654 aa6.91□□□□□ -1.3
LIME1-206ENST00000487026 SVIPQ8NHG7 77 aa6.81□□□□□ -1.32
LIME1-206ENST00000487026 MT3P25713 68 aa6.78□□□□□ -1.32
LIME1-206ENST00000487026 KRTAP9-9Q9BYP9 154 aa6.78□□□□□ -1.32
LIME1-206ENST00000487026 KRTAP5-1Q6L8H4 278 aa6.65□□□□□ -1.34
LIME1-206ENST00000487026 LCE1EQ5T753 118 aa6.24□□□□□ -1.41
LIME1-206ENST00000487026 LUZP6Q538Z0 58 aa6.15□□□□□ -1.42
LIME1-206ENST00000487026 LCE1BQ5T7P3 118 aa5.99□□□□□ -1.45
LIME1-206ENST00000487026 KRTAP4-2Q9BYR5 136 aa5.97□□□□□ -1.45
LIME1-206ENST00000487026 LCE1CQ5T751 118 aa5.81□□□□□ -1.48
LIME1-206ENST00000487026 KRTAP4-12Q9BQ66 201 aa5.56□□□□□ -1.52
LIME1-206ENST00000487026 LCE3DQ9BYE3 92 aa5.43□□□□□ -1.54
LIME1-206ENST00000487026 NDUFAF8A1L188 74 aa5.41□□□□□ -1.54
LIME1-206ENST00000487026 KRTAP5-11Q6L8G4 156 aa5.27□□□□□ -1.57
LIME1-206ENST00000487026 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.23□□□□□ -1.57
LIME1-206ENST00000487026 LCE1FQ5T754 118 aa5.16□□□□□ -1.58
LIME1-206ENST00000487026 LCE3EQ5T5B0 92 aa5.1□□□□□ -1.59
LIME1-206ENST00000487026 KRTAP21-2Q3LI59 83 aa4.88□□□□□ -1.63
LIME1-206ENST00000487026 PHGR1C9JFL3 82 aa4.81□□□□□ -1.64
LIME1-206ENST00000487026 A0A0A0MQY5 61 aa4.72□□□□□ -1.65
LIME1-206ENST00000487026 KRTAP4-4Q9BYR3 166 aa4.57□□□□□ -1.68
LIME1-206ENST00000487026 INE1O15225 51 aa4.55□□□□□ -1.68
LIME1-206ENST00000487026 MUC19Q7Z5P9 8384 aa4.33□□□□□ -1.72
LIME1-206ENST00000487026 PRM1P04553 51 aa4.11□□□□□ -1.75
LIME1-206ENST00000487026 H3BS24 57 aa3.62□□□□□ -1.83
LIME1-206ENST00000487026 KRTAP21-1Q3LI58 79 aa3.62□□□□□ -1.83
LIME1-206ENST00000487026 MUC16Q8WXI7 14507 aa3.01□□□□□ -1.93
Retrieved 77 of 20,778 RNA–protein pairs in 5.1 ms