RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 PRM1P04553 51 aa5.03□□□□□ -1.6
COL7A1-210ENST00000487017 KRTAP4-3Q9BYR4 195 aa4.98□□□□□ -1.61
COL7A1-210ENST00000487017 MT3P25713 68 aa4.98□□□□□ -1.61
COL7A1-210ENST00000487017 ABCA13Q86UQ4 5058 aa4.98□□□□□ -1.61
COL7A1-210ENST00000487017 LCE1BQ5T7P3 118 aa4.98□□□□□ -1.61
COL7A1-210ENST00000487017 KRTAP9-2Q9BYQ4 174 aa4.98□□□□□ -1.61
COL7A1-210ENST00000487017 KRTAP19-7Q3SYF9 63 aa4.94□□□□□ -1.62
COL7A1-210ENST00000487017 LCE1DQ5T752 114 aa4.92□□□□□ -1.62
COL7A1-210ENST00000487017 EPPK1P58107 5090 aaKnown RBP4.91□□□□□ -1.62
COL7A1-210ENST00000487017 KRTAP2-3P0C7H8 128 aa4.86□□□□□ -1.63
COL7A1-210ENST00000487017 KRTAP2-4Q9BYR9 128 aa4.86□□□□□ -1.63
COL7A1-210ENST00000487017 KRTAP2-1Q9BYU5 128 aa4.86□□□□□ -1.63
COL7A1-210ENST00000487017 HMCN2Q8NDA2 5059 aa4.83□□□□□ -1.64
COL7A1-210ENST00000487017 FAT4Q6V0I7 4981 aa4.81□□□□□ -1.64
COL7A1-210ENST00000487017 KRTAP9-6A0A140TA67 174 aa4.8□□□□□ -1.64
COL7A1-210ENST00000487017 MT1AP04731 61 aa4.78□□□□□ -1.64
COL7A1-210ENST00000487017 LCE2AQ5TA79 106 aaPredicted RBP4.78□□□□□ -1.64
COL7A1-210ENST00000487017 RNF213Q63HN8 5207 aa4.78□□□□□ -1.64
COL7A1-210ENST00000487017 KRTAP4-9Q9BYQ8 210 aa4.73□□□□□ -1.65
COL7A1-210ENST00000487017 UBR4Q5T4S7 5183 aa4.72□□□□□ -1.65
COL7A1-210ENST00000487017 SYNE1Q8NF91 8797 aaKnown RBP4.71□□□□□ -1.66
COL7A1-210ENST00000487017 FSIP2Q5CZC0 6907 aa4.65□□□□□ -1.67
COL7A1-210ENST00000487017 LCE5AQ5TCM9 118 aa4.64□□□□□ -1.67
COL7A1-210ENST00000487017 KRTAP20-1Q3LI63 56 aa4.63□□□□□ -1.67
COL7A1-210ENST00000487017 KRTAP9-6A8MVA2 160 aa4.62□□□□□ -1.67
COL7A1-210ENST00000487017 SYNE2Q8WXH0 6885 aaKnown RBP4.54□□□□□ -1.68
COL7A1-210ENST00000487017 KRTAP9-7A8MTY7 169 aa4.53□□□□□ -1.68
COL7A1-210ENST00000487017 KRTAP6-1Q3LI64 71 aa4.5□□□□□ -1.69
COL7A1-210ENST00000487017 MUC2Q02817 5179 aa4.45□□□□□ -1.7
COL7A1-210ENST00000487017 LCE1AQ5T7P2 110 aa4.43□□□□□ -1.7
COL7A1-210ENST00000487017 KRTAP6-2Q3LI66 62 aa4.42□□□□□ -1.7
COL7A1-210ENST00000487017 KRTAP9-4Q9BYQ2 154 aa4.41□□□□□ -1.7
COL7A1-210ENST00000487017 KRTAP6-3Q3LI67 103 aa4.33□□□□□ -1.72
COL7A1-210ENST00000487017 OBSCNQ5VST9 7968 aa4.32□□□□□ -1.72
COL7A1-210ENST00000487017 LCE1CQ5T751 118 aa4.3□□□□□ -1.72
COL7A1-210ENST00000487017 LCE1EQ5T753 118 aa4.3□□□□□ -1.72
COL7A1-210ENST00000487017 LCE1FQ5T754 118 aa4.3□□□□□ -1.72
COL7A1-210ENST00000487017 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.24□□□□□ -1.73
COL7A1-210ENST00000487017 LCE4AQ5TA78 99 aa4.2□□□□□ -1.74
COL7A1-210ENST00000487017 KRTAP2-2Q9BYT5 123 aa4.2□□□□□ -1.74
COL7A1-210ENST00000487017 USH2AO75445 5202 aa4.04□□□□□ -1.76
COL7A1-210ENST00000487017 FCGBPQ9Y6R7 5405 aaPredicted RBP4.01□□□□□ -1.77
COL7A1-210ENST00000487017 KMT2DO14686 5537 aa3.91□□□□□ -1.78
COL7A1-210ENST00000487017 KRTAP9-9Q9BYP9 154 aa3.85□□□□□ -1.79
COL7A1-210ENST00000487017 DSTQ03001 7570 aaKnown RBP3.82□□□□□ -1.8
COL7A1-210ENST00000487017 MACF1Q9UPN3 7388 aaKnown RBP3.75□□□□□ -1.81
COL7A1-210ENST00000487017 KRTAP5-9P26371 169 aa3.75□□□□□ -1.81
COL7A1-210ENST00000487017 SSPOA2VEC9 5147 aa3.73□□□□□ -1.81
COL7A1-210ENST00000487017 KRTAP4-11Q9BYQ6 195 aa3.73□□□□□ -1.81
COL7A1-210ENST00000487017 NEBP20929 6669 aa3.62□□□□□ -1.83
COL7A1-210ENST00000487017 KRTAP4-6Q9BYQ5 205 aa3.61□□□□□ -1.83
COL7A1-210ENST00000487017 GPR98Q8WXG9 6306 aa3.6□□□□□ -1.83
COL7A1-210ENST00000487017 KRTAP20-2Q3LI61 65 aa3.57□□□□□ -1.84
COL7A1-210ENST00000487017 MUC12Q9UKN1 5478 aa3.56□□□□□ -1.84
COL7A1-210ENST00000487017 KRTAP4-4Q9BYR3 166 aa3.5□□□□□ -1.85
COL7A1-210ENST00000487017 MUC19Q7Z5P9 8384 aa3.5□□□□□ -1.85
COL7A1-210ENST00000487017 KRTAP5-5Q701N2 237 aaPredicted RBP3.48□□□□□ -1.85
COL7A1-210ENST00000487017 KRTAP4-12Q9BQ66 201 aa3.42□□□□□ -1.86
COL7A1-210ENST00000487017 KRTAP4-2Q9BYR5 136 aa3.42□□□□□ -1.86
COL7A1-210ENST00000487017 MDN1Q9NU22 5596 aa3.35□□□□□ -1.87
COL7A1-210ENST00000487017 KRTAP5-4Q6L8H1 288 aa3.31□□□□□ -1.88
COL7A1-210ENST00000487017 KRTAP5-3Q6L8H2 238 aa2.88□□□□□ -1.95
COL7A1-210ENST00000487017 MUC5ACP98088 5654 aa2.87□□□□□ -1.95
COL7A1-210ENST00000487017 AHNAK2Q8IVF2 5795 aa2.78□□□□□ -1.96
COL7A1-210ENST00000487017 KRTAP5-10Q6L8G5 202 aa2.75□□□□□ -1.97
COL7A1-210ENST00000487017 HMCN1Q96RW7 5635 aa2.7□□□□□ -1.98
COL7A1-210ENST00000487017 KRTAP5-2Q701N4 177 aa2.66□□□□□ -1.98
COL7A1-210ENST00000487017 KRTAP5-8O75690 187 aa2.59□□□□□ -1.99
COL7A1-210ENST00000487017 PHGR1C9JFL3 82 aa2.57□□□□□ -2
COL7A1-210ENST00000487017 MUC5BQ9HC84 5762 aaPredicted RBP2.41□□□□□ -2.02
COL7A1-210ENST00000487017 KRTAP5-1Q6L8H4 278 aa2.4□□□□□ -2.03
COL7A1-210ENST00000487017 KRTAP5-11Q6L8G4 156 aa2.39□□□□□ -2.03
COL7A1-210ENST00000487017 KRTAP21-2Q3LI59 83 aa2.32□□□□□ -2.04
COL7A1-210ENST00000487017 AHNAKQ09666 5890 aaKnown RBP2.28□□□□□ -2.04
COL7A1-210ENST00000487017 KRTAP21-1Q3LI58 79 aa2.21□□□□□ -2.06
COL7A1-210ENST00000487017 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.16□□□□□ -2.06
COL7A1-210ENST00000487017 KRTAP5-7Q6L8G8 165 aa1.85□□□□□ -2.11
COL7A1-210ENST00000487017 MUC16Q8WXI7 14507 aa1.4□□□□□ -2.19
Retrieved 78 of 20,778 RNA–protein pairs in 102.5 ms