RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 PP632Q6XCG6 107 aa3.29□□□□□ -1.88
HDAC3-209ENST00000486618 KRTAP4-4Q9BYR3 166 aa3.29□□□□□ -1.88
HDAC3-209ENST00000486618 TP53AIP1Q9HCN2 124 aa3.28□□□□□ -1.88
HDAC3-209ENST00000486618 CRIPTQ9P021 101 aa3.27□□□□□ -1.89
HDAC3-209ENST00000486618 KRTAP12-2P59991 146 aa3.23□□□□□ -1.89
HDAC3-209ENST00000486618 NEBP20929 6669 aa3.21□□□□□ -1.9
HDAC3-209ENST00000486618 K7EQZ3 153 aa3.21□□□□□ -1.9
HDAC3-209ENST00000486618 KRTAP20-1Q3LI63 56 aa3.21□□□□□ -1.9
HDAC3-209ENST00000486618 KRTAP5-9P26371 169 aa3.2□□□□□ -1.9
HDAC3-209ENST00000486618 MRPL34Q9BQ48 92 aaKnown RBP3.17□□□□□ -1.9
HDAC3-209ENST00000486618 WFDC13Q8IUB5 93 aa3.16□□□□□ -1.9
HDAC3-209ENST00000486618 H0YAA0 97 aa3.11□□□□□ -1.91
HDAC3-209ENST00000486618 H1FX-AS1Q4G0G2 97 aa3.1□□□□□ -1.91
HDAC3-209ENST00000486618 LCE3EQ5T5B0 92 aa3.09□□□□□ -1.91
HDAC3-209ENST00000486618 MUC12Q9UKN1 5478 aa3.08□□□□□ -1.92
HDAC3-209ENST00000486618 KRTAP2-3P0C7H8 128 aa3.08□□□□□ -1.92
HDAC3-209ENST00000486618 KRTAP2-4Q9BYR9 128 aa3.08□□□□□ -1.92
HDAC3-209ENST00000486618 OBSCNQ5VST9 7968 aa3.01□□□□□ -1.93
HDAC3-209ENST00000486618 MT1BP07438 61 aa3□□□□□ -1.93
HDAC3-209ENST00000486618 KMT2DO14686 5537 aa2.99□□□□□ -1.93
HDAC3-209ENST00000486618 MMP24-AS1A0A0U1RRL7 71 aa2.99□□□□□ -1.93
HDAC3-209ENST00000486618 S4R3F8 94 aa2.99□□□□□ -1.93
HDAC3-209ENST00000486618 KRTAP19-8Q3LI54 63 aa2.98□□□□□ -1.93
HDAC3-209ENST00000486618 C10orf95Q9H7T3 257 aa2.97□□□□□ -1.93
HDAC3-209ENST00000486618 LCE3AQ5TA76 89 aa2.96□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2GQ9BYE4 73 aa2.96□□□□□ -1.94
HDAC3-209ENST00000486618 KRTAP2-1Q9BYU5 128 aa2.96□□□□□ -1.94
HDAC3-209ENST00000486618 MDN1Q9NU22 5596 aa2.96□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2EP22531 72 aa2.95□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2BP35325 72 aa2.95□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2AP35326 72 aa2.95□□□□□ -1.94
HDAC3-209ENST00000486618 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
HDAC3-209ENST00000486618 KRTAP13-4Q3LI77 160 aa2.93□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2FQ96RM1 72 aa2.93□□□□□ -1.94
HDAC3-209ENST00000486618 SPRR2DP22532 72 aa2.86□□□□□ -1.95
HDAC3-209ENST00000486618 SPRR5A0A1B0GTR4 108 aa2.85□□□□□ -1.95
HDAC3-209ENST00000486618 KRTAP8-1Q8IUC2 63 aa2.85□□□□□ -1.95
HDAC3-209ENST00000486618 MT1XP80297 61 aa2.76□□□□□ -1.97
HDAC3-209ENST00000486618 GPR98Q8WXG9 6306 aa2.76□□□□□ -1.97
HDAC3-209ENST00000486618 KRTAP5-5Q701N2 237 aaPredicted RBP2.74□□□□□ -1.97
HDAC3-209ENST00000486618 M0QZ58 72 aa2.73□□□□□ -1.97
HDAC3-209ENST00000486618 KRTAP5-2Q701N4 177 aa2.71□□□□□ -1.98
HDAC3-209ENST00000486618 DSTQ03001 7570 aaKnown RBP2.63□□□□□ -1.99
HDAC3-209ENST00000486618 KRTAP12-1P59990 96 aa2.62□□□□□ -1.99
HDAC3-209ENST00000486618 LCE1CQ5T751 118 aa2.57□□□□□ -2
HDAC3-209ENST00000486618 LCE1BQ5T7P3 118 aa2.57□□□□□ -2
HDAC3-209ENST00000486618 A0A0D9SG42 100 aa2.53□□□□□ -2
HDAC3-209ENST00000486618 MT4P47944 62 aa2.51□□□□□ -2.01
HDAC3-209ENST00000486618 KRTAP19-3Q7Z4W3 81 aa2.51□□□□□ -2.01
HDAC3-209ENST00000486618 KRTAP5-10Q6L8G5 202 aa2.5□□□□□ -2.01
HDAC3-209ENST00000486618 HMCN1Q96RW7 5635 aa2.47□□□□□ -2.01
HDAC3-209ENST00000486618 LCE3DQ9BYE3 92 aa2.47□□□□□ -2.01
HDAC3-209ENST00000486618 AHNAK2Q8IVF2 5795 aa2.46□□□□□ -2.02
HDAC3-209ENST00000486618 MT1EP04732 61 aa2.46□□□□□ -2.02
HDAC3-209ENST00000486618 KRTAP12-4P60329 112 aa2.46□□□□□ -2.02
HDAC3-209ENST00000486618 KRTAP19-7Q3SYF9 63 aa2.46□□□□□ -2.02
HDAC3-209ENST00000486618 KRTAP5-7Q6L8G8 165 aa2.45□□□□□ -2.02
HDAC3-209ENST00000486618 MT1GP13640 62 aa2.44□□□□□ -2.02
HDAC3-209ENST00000486618 MT1MQ8N339 61 aa2.37□□□□□ -2.03
HDAC3-209ENST00000486618 KRTAP19-5Q3LI72 72 aa2.35□□□□□ -2.03
HDAC3-209ENST00000486618 TNP1P09430 55 aa2.31□□□□□ -2.04
HDAC3-209ENST00000486618 MT1LQ93083 61 aa2.31□□□□□ -2.04
HDAC3-209ENST00000486618 KRTAP20-2Q3LI61 65 aa2.28□□□□□ -2.04
HDAC3-209ENST00000486618 KRTAP5-8O75690 187 aa2.21□□□□□ -2.06
HDAC3-209ENST00000486618 KRTAP12-3P60328 96 aa2.17□□□□□ -2.06
HDAC3-209ENST00000486618 MUC19Q7Z5P9 8384 aa2.12□□□□□ -2.07
HDAC3-209ENST00000486618 AHNAKQ09666 5890 aaKnown RBP2.11□□□□□ -2.07
HDAC3-209ENST00000486618 SYNE1Q8NF91 8797 aaKnown RBP2.11□□□□□ -2.07
HDAC3-209ENST00000486618 MUC5ACP98088 5654 aa2.08□□□□□ -2.08
HDAC3-209ENST00000486618 MUC5BQ9HC84 5762 aaPredicted RBP2.07□□□□□ -2.08
HDAC3-209ENST00000486618 MT1AP04731 61 aa1.98□□□□□ -2.09
HDAC3-209ENST00000486618 KRTAP6-1Q3LI64 71 aa1.96□□□□□ -2.1
HDAC3-209ENST00000486618 KRTAP6-2Q3LI66 62 aa1.93□□□□□ -2.1
HDAC3-209ENST00000486618 KRTAP21-2Q3LI59 83 aa1.85□□□□□ -2.11
HDAC3-209ENST00000486618 PRM1P04553 51 aa1.76□□□□□ -2.13
HDAC3-209ENST00000486618 PHGR1C9JFL3 82 aa1.48□□□□□ -2.17
HDAC3-209ENST00000486618 KRTAP21-1Q3LI58 79 aa1.32□□□□□ -2.2
HDAC3-209ENST00000486618 MUC16Q8WXI7 14507 aa0.95□□□□□ -2.26
Retrieved 78 of 20,778 RNA–protein pairs in 63.8 ms