RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 LCE4AQ5TA78 99 aa6.89□□□□□ -1.31
VIM-205ENST00000485947 KRTAP8-1Q8IUC2 63 aa6.89□□□□□ -1.31
VIM-205ENST00000485947 SPRR2FQ96RM1 72 aa6.89□□□□□ -1.31
VIM-205ENST00000485947 C10orf95Q9H7T3 257 aa6.88□□□□□ -1.31
VIM-205ENST00000485947 ROMO1P60602 79 aa6.87□□□□□ -1.31
VIM-205ENST00000485947 GPR98Q8WXG9 6306 aa6.86□□□□□ -1.31
VIM-205ENST00000485947 KRTAP19-4Q3LI73 84 aa6.81□□□□□ -1.32
VIM-205ENST00000485947 KRTAP4-9Q9BYQ8 210 aa6.8□□□□□ -1.32
VIM-205ENST00000485947 LCE1AQ5T7P2 110 aa6.78□□□□□ -1.32
VIM-205ENST00000485947 KRTAP10-12P60413 245 aa6.77□□□□□ -1.33
VIM-205ENST00000485947 TNP1P09430 55 aa6.76□□□□□ -1.33
VIM-205ENST00000485947 KRTAP25-1Q3LHN0 102 aa6.74□□□□□ -1.33
VIM-205ENST00000485947 KRTAP10-7P60409 375 aaPredicted RBP6.72□□□□□ -1.33
VIM-205ENST00000485947 SPRR2DP22532 72 aa6.7□□□□□ -1.34
VIM-205ENST00000485947 KRTAP4-2Q9BYR5 136 aa6.64□□□□□ -1.35
VIM-205ENST00000485947 KTN1-AS1Q86SY8 53 aa6.58□□□□□ -1.36
VIM-205ENST00000485947 KRTAP4-11Q9BYQ6 195 aa6.57□□□□□ -1.36
VIM-205ENST00000485947 KRTAP23-1A1A580 65 aa6.55□□□□□ -1.36
VIM-205ENST00000485947 LCE5AQ5TCM9 118 aa6.51□□□□□ -1.37
VIM-205ENST00000485947 PP632Q6XCG6 107 aa6.49□□□□□ -1.37
VIM-205ENST00000485947 SVIPQ8NHG7 77 aa6.48□□□□□ -1.37
VIM-205ENST00000485947 DSTQ03001 7570 aaKnown RBP6.48□□□□□ -1.37
VIM-205ENST00000485947 LCE3AQ5TA76 89 aa6.46□□□□□ -1.38
VIM-205ENST00000485947 PRAC1Q96KF2 57 aa6.43□□□□□ -1.38
VIM-205ENST00000485947 KRTAP19-7Q3SYF9 63 aa6.33□□□□□ -1.4
VIM-205ENST00000485947 MT1EP04732 61 aa6.28□□□□□ -1.4
VIM-205ENST00000485947 KRTAP19-3Q7Z4W3 81 aa6.26□□□□□ -1.41
VIM-205ENST00000485947 KRTAP19-5Q3LI72 72 aa6.24□□□□□ -1.41
VIM-205ENST00000485947 KRTAP12-3P60328 96 aa6.22□□□□□ -1.41
VIM-205ENST00000485947 MT1GP13640 62 aa6.15□□□□□ -1.42
VIM-205ENST00000485947 AHNAK2Q8IVF2 5795 aa6.09□□□□□ -1.44
VIM-205ENST00000485947 KRTAP5-10Q6L8G5 202 aa6.08□□□□□ -1.44
VIM-205ENST00000485947 KRTAP15-1Q3LI76 137 aa6.07□□□□□ -1.44
VIM-205ENST00000485947 HMCN1Q96RW7 5635 aa6.06□□□□□ -1.44
VIM-205ENST00000485947 MT1LQ93083 61 aa6□□□□□ -1.45
VIM-205ENST00000485947 MT1MQ8N339 61 aa5.98□□□□□ -1.45
VIM-205ENST00000485947 KRTAP5-7Q6L8G8 165 aa5.94□□□□□ -1.46
VIM-205ENST00000485947 MT4P47944 62 aa5.92□□□□□ -1.46
VIM-205ENST00000485947 KRTAP5-3Q6L8H2 238 aa5.85□□□□□ -1.47
VIM-205ENST00000485947 LCE3CQ5T5A8 94 aa5.8□□□□□ -1.48
VIM-205ENST00000485947 KRTAP5-4Q6L8H1 288 aa5.75□□□□□ -1.49
VIM-205ENST00000485947 KRTAP4-3Q9BYR4 195 aa5.73□□□□□ -1.49
VIM-205ENST00000485947 SPRR5A0A1B0GTR4 108 aa5.69□□□□□ -1.5
VIM-205ENST00000485947 KRTAP5-5Q701N2 237 aaPredicted RBP5.5□□□□□ -1.53
VIM-205ENST00000485947 KRTAP9-6A8MVA2 160 aa5.42□□□□□ -1.54
VIM-205ENST00000485947 KRTAP12-4P60329 112 aa5.41□□□□□ -1.54
VIM-205ENST00000485947 KRTAP20-2Q3LI61 65 aa5.4□□□□□ -1.54
VIM-205ENST00000485947 A0A0A0MQY5 61 aa5.38□□□□□ -1.55
VIM-205ENST00000485947 LUZP6Q538Z0 58 aa5.36□□□□□ -1.55
VIM-205ENST00000485947 AHNAKQ09666 5890 aaKnown RBP5.22□□□□□ -1.57
VIM-205ENST00000485947 SYNE1Q8NF91 8797 aaKnown RBP5.2□□□□□ -1.58
VIM-205ENST00000485947 MUC5ACP98088 5654 aa5.15□□□□□ -1.59
VIM-205ENST00000485947 MT1AP04731 61 aa5.14□□□□□ -1.59
VIM-205ENST00000485947 MUC5BQ9HC84 5762 aaPredicted RBP5.1□□□□□ -1.59
VIM-205ENST00000485947 KRTAP6-1Q3LI64 71 aa5.04□□□□□ -1.6
VIM-205ENST00000485947 KRTAP5-2Q701N4 177 aa5.04□□□□□ -1.6
VIM-205ENST00000485947 NDUFAF8A1L188 74 aa5.02□□□□□ -1.61
VIM-205ENST00000485947 KRTAP5-8O75690 187 aa5.01□□□□□ -1.61
VIM-205ENST00000485947 KRTAP6-2Q3LI66 62 aa4.83□□□□□ -1.64
VIM-205ENST00000485947 OBSCNQ5VST9 7968 aa4.76□□□□□ -1.65
VIM-205ENST00000485947 MT3P25713 68 aa4.73□□□□□ -1.65
VIM-205ENST00000485947 KRTAP5-1Q6L8H4 278 aa4.5□□□□□ -1.69
VIM-205ENST00000485947 KRTAP5-11Q6L8G4 156 aa4.44□□□□□ -1.7
VIM-205ENST00000485947 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.42□□□□□ -1.7
VIM-205ENST00000485947 LCE1EQ5T753 118 aa4.39□□□□□ -1.71
VIM-205ENST00000485947 LCE3DQ9BYE3 92 aa4.33□□□□□ -1.72
VIM-205ENST00000485947 INE1O15225 51 aa4.22□□□□□ -1.73
VIM-205ENST00000485947 LCE3EQ5T5B0 92 aa4.2□□□□□ -1.74
VIM-205ENST00000485947 LCE1FQ5T754 118 aa4.1□□□□□ -1.75
VIM-205ENST00000485947 LCE1CQ5T751 118 aa4.05□□□□□ -1.76
VIM-205ENST00000485947 LCE1BQ5T7P3 118 aa4.05□□□□□ -1.76
VIM-205ENST00000485947 KRTAP4-4Q9BYR3 166 aa3.68□□□□□ -1.82
VIM-205ENST00000485947 PHGR1C9JFL3 82 aa3.54□□□□□ -1.84
VIM-205ENST00000485947 PRM1P04553 51 aa3.54□□□□□ -1.84
VIM-205ENST00000485947 KRTAP21-2Q3LI59 83 aa3.35□□□□□ -1.87
VIM-205ENST00000485947 MUC19Q7Z5P9 8384 aa3□□□□□ -1.93
VIM-205ENST00000485947 KRTAP21-1Q3LI58 79 aa2.7□□□□□ -1.98
VIM-205ENST00000485947 MUC16Q8WXI7 14507 aa2.07□□□□□ -2.08
Retrieved 78 of 20,778 RNA–protein pairs in 88.8 ms