RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 KRTAP19-7Q3SYF9 63 aa4.62□□□□□ -1.67
PTPRF-213ENST00000481019 KRTAP2-3P0C7H8 128 aa4.61□□□□□ -1.67
PTPRF-213ENST00000481019 KRTAP2-4Q9BYR9 128 aa4.61□□□□□ -1.67
PTPRF-213ENST00000481019 SPRR2DP22532 72 aa4.59□□□□□ -1.67
PTPRF-213ENST00000481019 PRAC1Q96KF2 57 aa4.59□□□□□ -1.67
PTPRF-213ENST00000481019 MT1EP04732 61 aa4.56□□□□□ -1.68
PTPRF-213ENST00000481019 KRTAP19-5Q3LI72 72 aa4.53□□□□□ -1.68
PTPRF-213ENST00000481019 LCE3AQ5TA76 89 aa4.53□□□□□ -1.68
PTPRF-213ENST00000481019 LCE5AQ5TCM9 118 aa4.47□□□□□ -1.69
PTPRF-213ENST00000481019 KRTAP2-2Q9BYT5 123 aa4.47□□□□□ -1.69
PTPRF-213ENST00000481019 KRTAP2-1Q9BYU5 128 aa4.47□□□□□ -1.69
PTPRF-213ENST00000481019 LCE3BQ5TA77 95 aa4.46□□□□□ -1.7
PTPRF-213ENST00000481019 KRTAP19-3Q7Z4W3 81 aa4.46□□□□□ -1.7
PTPRF-213ENST00000481019 KRTAP12-3P60328 96 aa4.42□□□□□ -1.7
PTPRF-213ENST00000481019 DSTQ03001 7570 aaKnown RBP4.4□□□□□ -1.71
PTPRF-213ENST00000481019 MT1LQ93083 61 aa4.37□□□□□ -1.71
PTPRF-213ENST00000481019 KRTAP19-4Q3LI73 84 aa4.36□□□□□ -1.71
PTPRF-213ENST00000481019 MT1GP13640 62 aa4.34□□□□□ -1.71
PTPRF-213ENST00000481019 KRTAP15-1Q3LI76 137 aa4.33□□□□□ -1.72
PTPRF-213ENST00000481019 MT1MQ8N339 61 aa4.32□□□□□ -1.72
PTPRF-213ENST00000481019 KRTAP4-3Q9BYR4 195 aa4.29□□□□□ -1.72
PTPRF-213ENST00000481019 GPR98Q8WXG9 6306 aa4.25□□□□□ -1.73
PTPRF-213ENST00000481019 H3BS24 57 aa4.23□□□□□ -1.73
PTPRF-213ENST00000481019 KRTAP4-7Q9BYR0 210 aa4.23□□□□□ -1.73
PTPRF-213ENST00000481019 KRTAP4-9Q9BYQ8 210 aa4.18□□□□□ -1.74
PTPRF-213ENST00000481019 HMCN1Q96RW7 5635 aa4.13□□□□□ -1.75
PTPRF-213ENST00000481019 LCE3CQ5T5A8 94 aa4.12□□□□□ -1.75
PTPRF-213ENST00000481019 LCE1DQ5T752 114 aa4.07□□□□□ -1.76
PTPRF-213ENST00000481019 LCE4AQ5TA78 99 aa4.04□□□□□ -1.76
PTPRF-213ENST00000481019 KRTAP5-4Q6L8H1 288 aa4.04□□□□□ -1.76
PTPRF-213ENST00000481019 MT4P47944 62 aa4.03□□□□□ -1.76
PTPRF-213ENST00000481019 LOC100996750A0A140TA64 210 aa4□□□□□ -1.77
PTPRF-213ENST00000481019 SPRR5A0A1B0GTR4 108 aa4□□□□□ -1.77
PTPRF-213ENST00000481019 LUZP6Q538Z0 58 aa3.99□□□□□ -1.77
PTPRF-213ENST00000481019 KRTAP5-5Q701N2 237 aaPredicted RBP3.97□□□□□ -1.77
PTPRF-213ENST00000481019 KRTAP4-6Q9BYQ5 205 aa3.97□□□□□ -1.77
PTPRF-213ENST00000481019 AHNAK2Q8IVF2 5795 aa3.97□□□□□ -1.77
PTPRF-213ENST00000481019 A0A0A0MQY5 61 aa3.87□□□□□ -1.79
PTPRF-213ENST00000481019 SYNE1Q8NF91 8797 aaKnown RBP3.84□□□□□ -1.79
PTPRF-213ENST00000481019 KRTAP9-6A8MVA2 160 aa3.81□□□□□ -1.8
PTPRF-213ENST00000481019 KRTAP20-2Q3LI61 65 aa3.81□□□□□ -1.8
PTPRF-213ENST00000481019 KRTAP12-4P60329 112 aa3.74□□□□□ -1.81
PTPRF-213ENST00000481019 KRTAP6-1Q3LI64 71 aa3.72□□□□□ -1.81
PTPRF-213ENST00000481019 KRTAP5-10Q6L8G5 202 aa3.71□□□□□ -1.82
PTPRF-213ENST00000481019 KRTAP5-3Q6L8H2 238 aa3.71□□□□□ -1.82
PTPRF-213ENST00000481019 MT1AP04731 61 aa3.7□□□□□ -1.82
PTPRF-213ENST00000481019 NDUFAF8A1L188 74 aa3.66□□□□□ -1.82
PTPRF-213ENST00000481019 KRTAP5-7Q6L8G8 165 aa3.61□□□□□ -1.83
PTPRF-213ENST00000481019 KRTAP5-2Q701N4 177 aa3.58□□□□□ -1.84
PTPRF-213ENST00000481019 KRTAP9-4Q9BYQ2 154 aa3.57□□□□□ -1.84
PTPRF-213ENST00000481019 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
PTPRF-213ENST00000481019 KRTAP4-11Q9BYQ6 195 aa3.43□□□□□ -1.86
PTPRF-213ENST00000481019 KRTAP5-8O75690 187 aa3.34□□□□□ -1.87
PTPRF-213ENST00000481019 MT3P25713 68 aa3.34□□□□□ -1.87
PTPRF-213ENST00000481019 OBSCNQ5VST9 7968 aa3.31□□□□□ -1.88
PTPRF-213ENST00000481019 MUC5ACP98088 5654 aa3.29□□□□□ -1.88
PTPRF-213ENST00000481019 AHNAKQ09666 5890 aaKnown RBP3.26□□□□□ -1.89
PTPRF-213ENST00000481019 MUC5BQ9HC84 5762 aaPredicted RBP3.25□□□□□ -1.89
PTPRF-213ENST00000481019 KRTAP5-1Q6L8H4 278 aa3.19□□□□□ -1.9
PTPRF-213ENST00000481019 INE1O15225 51 aa3.15□□□□□ -1.91
PTPRF-213ENST00000481019 LCE3DQ9BYE3 92 aa3.11□□□□□ -1.91
PTPRF-213ENST00000481019 KRTAP9-9Q9BYP9 154 aa3.08□□□□□ -1.92
PTPRF-213ENST00000481019 LCE1EQ5T753 118 aa3.04□□□□□ -1.92
PTPRF-213ENST00000481019 LCE3EQ5T5B0 92 aa3.02□□□□□ -1.93
PTPRF-213ENST00000481019 KRTAP4-2Q9BYR5 136 aa2.92□□□□□ -1.94
PTPRF-213ENST00000481019 LCE1BQ5T7P3 118 aa2.89□□□□□ -1.95
PTPRF-213ENST00000481019 LCE1CQ5T751 118 aa2.83□□□□□ -1.96
PTPRF-213ENST00000481019 KRTAP4-12Q9BQ66 201 aa2.63□□□□□ -1.99
PTPRF-213ENST00000481019 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.6□□□□□ -1.99
PTPRF-213ENST00000481019 KRTAP5-11Q6L8G4 156 aa2.56□□□□□ -2
PTPRF-213ENST00000481019 PRM1P04553 51 aa2.52□□□□□ -2.01
PTPRF-213ENST00000481019 KRTAP21-2Q3LI59 83 aa2.45□□□□□ -2.02
PTPRF-213ENST00000481019 LCE1FQ5T754 118 aa2.42□□□□□ -2.02
PTPRF-213ENST00000481019 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
PTPRF-213ENST00000481019 PHGR1C9JFL3 82 aa2.23□□□□□ -2.05
PTPRF-213ENST00000481019 MUC19Q7Z5P9 8384 aa2.02□□□□□ -2.09
PTPRF-213ENST00000481019 KRTAP21-1Q3LI58 79 aa1.68□□□□□ -2.14
PTPRF-213ENST00000481019 MUC16Q8WXI7 14507 aa1.53□□□□□ -2.16
Retrieved 78 of 20,778 RNA–protein pairs in 12.4 ms