RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 MUC12Q9UKN1 5478 aa4.44□□□□□ -1.7
SEC13-216ENST00000479868 KRTAP19-3Q7Z4W3 81 aa4.36□□□□□ -1.71
SEC13-216ENST00000479868 KRTAP4-3Q9BYR4 195 aa4.35□□□□□ -1.71
SEC13-216ENST00000479868 KRTAP9-2Q9BYQ4 174 aa4.34□□□□□ -1.72
SEC13-216ENST00000479868 MACF1Q9UPN3 7388 aaKnown RBP4.33□□□□□ -1.72
SEC13-216ENST00000479868 MT1MQ8N339 61 aa4.33□□□□□ -1.72
SEC13-216ENST00000479868 MT1GP13640 62 aa4.32□□□□□ -1.72
SEC13-216ENST00000479868 SPRR2FQ96RM1 72 aa4.31□□□□□ -1.72
SEC13-216ENST00000479868 LOC100996750A0A140TA64 210 aa4.27□□□□□ -1.73
SEC13-216ENST00000479868 KRTAP2-3P0C7H8 128 aa4.26□□□□□ -1.73
SEC13-216ENST00000479868 KRTAP2-4Q9BYR9 128 aa4.26□□□□□ -1.73
SEC13-216ENST00000479868 KRTAP2-1Q9BYU5 128 aa4.26□□□□□ -1.73
SEC13-216ENST00000479868 KRTAP2-2Q9BYT5 123 aa4.26□□□□□ -1.73
SEC13-216ENST00000479868 LCE5AQ5TCM9 118 aa4.25□□□□□ -1.73
SEC13-216ENST00000479868 SYNE2Q8WXH0 6885 aaKnown RBP4.23□□□□□ -1.73
SEC13-216ENST00000479868 CRCT1Q9UGL9 99 aa4.21□□□□□ -1.73
SEC13-216ENST00000479868 DSTQ03001 7570 aaKnown RBP4.17□□□□□ -1.74
SEC13-216ENST00000479868 MDN1Q9NU22 5596 aa4.14□□□□□ -1.75
SEC13-216ENST00000479868 KRTAP9-6A0A140TA67 174 aa4.12□□□□□ -1.75
SEC13-216ENST00000479868 KRTAP5-9P26371 169 aa4.11□□□□□ -1.75
SEC13-216ENST00000479868 LCE1AQ5T7P2 110 aa4.06□□□□□ -1.76
SEC13-216ENST00000479868 KRTAP4-6Q9BYQ5 205 aa4.03□□□□□ -1.76
SEC13-216ENST00000479868 SPRR2EP22531 72 aa3.98□□□□□ -1.77
SEC13-216ENST00000479868 SPRR2BP35325 72 aa3.98□□□□□ -1.77
SEC13-216ENST00000479868 SPRR2AP35326 72 aa3.98□□□□□ -1.77
SEC13-216ENST00000479868 LCE1FQ5T754 118 aa3.96□□□□□ -1.78
SEC13-216ENST00000479868 KRTAP9-4Q9BYQ2 154 aa3.95□□□□□ -1.78
SEC13-216ENST00000479868 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.89□□□□□ -1.79
SEC13-216ENST00000479868 KRTAP6-1Q3LI64 71 aa3.88□□□□□ -1.79
SEC13-216ENST00000479868 LCE3BQ5TA77 95 aa3.87□□□□□ -1.79
SEC13-216ENST00000479868 KRTAP5-5Q701N2 237 aaPredicted RBP3.86□□□□□ -1.79
SEC13-216ENST00000479868 KRTAP6-3Q3LI67 103 aa3.85□□□□□ -1.79
SEC13-216ENST00000479868 MT1AP04731 61 aa3.84□□□□□ -1.79
SEC13-216ENST00000479868 SPRR2DP22532 72 aa3.82□□□□□ -1.8
SEC13-216ENST00000479868 LCE1EQ5T753 118 aa3.8□□□□□ -1.8
SEC13-216ENST00000479868 SYNE1Q8NF91 8797 aaKnown RBP3.76□□□□□ -1.81
SEC13-216ENST00000479868 KRTAP4-9Q9BYQ8 210 aa3.75□□□□□ -1.81
SEC13-216ENST00000479868 KRTAP9-9Q9BYP9 154 aa3.74□□□□□ -1.81
SEC13-216ENST00000479868 KRTAP9-7A8MTY7 169 aa3.73□□□□□ -1.81
SEC13-216ENST00000479868 KRTAP12-4P60329 112 aa3.71□□□□□ -1.82
SEC13-216ENST00000479868 LCE1DQ5T752 114 aa3.63□□□□□ -1.83
SEC13-216ENST00000479868 NEBP20929 6669 aa3.6□□□□□ -1.83
SEC13-216ENST00000479868 LCE3DQ9BYE3 92 aa3.58□□□□□ -1.84
SEC13-216ENST00000479868 KRTAP6-2Q3LI66 62 aa3.51□□□□□ -1.85
SEC13-216ENST00000479868 LCE3EQ5T5B0 92 aa3.51□□□□□ -1.85
SEC13-216ENST00000479868 LCE4AQ5TA78 99 aa3.51□□□□□ -1.85
SEC13-216ENST00000479868 KRTAP5-4Q6L8H1 288 aa3.51□□□□□ -1.85
SEC13-216ENST00000479868 MT3P25713 68 aa3.46□□□□□ -1.86
SEC13-216ENST00000479868 OBSCNQ5VST9 7968 aa3.38□□□□□ -1.87
SEC13-216ENST00000479868 MT4P47944 62 aa3.36□□□□□ -1.87
SEC13-216ENST00000479868 KRTAP20-2Q3LI61 65 aa3.29□□□□□ -1.88
SEC13-216ENST00000479868 KRTAP20-1Q3LI63 56 aa3.29□□□□□ -1.88
SEC13-216ENST00000479868 HMCN1Q96RW7 5635 aa3.25□□□□□ -1.89
SEC13-216ENST00000479868 PRM1P04553 51 aa3.25□□□□□ -1.89
SEC13-216ENST00000479868 KRTAP5-3Q6L8H2 238 aa3.24□□□□□ -1.89
SEC13-216ENST00000479868 KRTAP5-2Q701N4 177 aa3.23□□□□□ -1.89
SEC13-216ENST00000479868 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
SEC13-216ENST00000479868 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
SEC13-216ENST00000479868 MUC5ACP98088 5654 aa2.89□□□□□ -1.95
SEC13-216ENST00000479868 LCE1BQ5T7P3 118 aa2.82□□□□□ -1.96
SEC13-216ENST00000479868 KRTAP5-1Q6L8H4 278 aa2.79□□□□□ -1.96
SEC13-216ENST00000479868 KRTAP4-11Q9BYQ6 195 aa2.78□□□□□ -1.96
SEC13-216ENST00000479868 KRTAP5-10Q6L8G5 202 aa2.76□□□□□ -1.97
SEC13-216ENST00000479868 LCE1CQ5T751 118 aa2.73□□□□□ -1.97
SEC13-216ENST00000479868 GPR98Q8WXG9 6306 aa2.7□□□□□ -1.98
SEC13-216ENST00000479868 AHNAK2Q8IVF2 5795 aa2.69□□□□□ -1.98
SEC13-216ENST00000479868 KRTAP5-8O75690 187 aa2.66□□□□□ -1.98
SEC13-216ENST00000479868 KRTAP5-7Q6L8G8 165 aa2.59□□□□□ -1.99
SEC13-216ENST00000479868 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.57□□□□□ -2
SEC13-216ENST00000479868 KRTAP21-2Q3LI59 83 aa2.52□□□□□ -2.01
SEC13-216ENST00000479868 MUC19Q7Z5P9 8384 aa2.45□□□□□ -2.02
SEC13-216ENST00000479868 KRTAP5-11Q6L8G4 156 aa2.37□□□□□ -2.03
SEC13-216ENST00000479868 MUC5BQ9HC84 5762 aaPredicted RBP2.37□□□□□ -2.03
SEC13-216ENST00000479868 KRTAP4-4Q9BYR3 166 aa2.29□□□□□ -2.04
SEC13-216ENST00000479868 AHNAKQ09666 5890 aaKnown RBP2.16□□□□□ -2.06
SEC13-216ENST00000479868 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
SEC13-216ENST00000479868 PHGR1C9JFL3 82 aa2.05□□□□□ -2.08
SEC13-216ENST00000479868 MUC16Q8WXI7 14507 aa1.32□□□□□ -2.2
Retrieved 78 of 20,778 RNA–protein pairs in 102.5 ms