RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 MT1LQ93083 61 aa3.75□□□□□ -1.81
VPS52-217ENST00000478934 KRTAP19-6Q3LI70 58 aa3.7□□□□□ -1.82
VPS52-217ENST00000478934 KRTAP4-3Q9BYR4 195 aa3.69□□□□□ -1.82
VPS52-217ENST00000478934 DSTQ03001 7570 aaKnown RBP3.63□□□□□ -1.83
VPS52-217ENST00000478934 KRTAP9-6A0A140TA67 174 aa3.63□□□□□ -1.83
VPS52-217ENST00000478934 KRTAP9-2Q9BYQ4 174 aa3.62□□□□□ -1.83
VPS52-217ENST00000478934 KRTAP2-3P0C7H8 128 aa3.61□□□□□ -1.83
VPS52-217ENST00000478934 KRTAP2-4Q9BYR9 128 aa3.61□□□□□ -1.83
VPS52-217ENST00000478934 KRTAP2-1Q9BYU5 128 aa3.61□□□□□ -1.83
VPS52-217ENST00000478934 CRCT1Q9UGL9 99 aa3.58□□□□□ -1.84
VPS52-217ENST00000478934 MT1GP13640 62 aa3.57□□□□□ -1.84
VPS52-217ENST00000478934 MACF1Q9UPN3 7388 aaKnown RBP3.54□□□□□ -1.84
VPS52-217ENST00000478934 MT1MQ8N339 61 aa3.52□□□□□ -1.85
VPS52-217ENST00000478934 SYNE2Q8WXH0 6885 aaKnown RBP3.51□□□□□ -1.85
VPS52-217ENST00000478934 KRTAP19-3Q7Z4W3 81 aa3.5□□□□□ -1.85
VPS52-217ENST00000478934 KRTAP19-4Q3LI73 84 aa3.49□□□□□ -1.85
VPS52-217ENST00000478934 SPRR2FQ96RM1 72 aa3.46□□□□□ -1.86
VPS52-217ENST00000478934 MDN1Q9NU22 5596 aa3.44□□□□□ -1.86
VPS52-217ENST00000478934 LCE5AQ5TCM9 118 aa3.4□□□□□ -1.87
VPS52-217ENST00000478934 SYNE1Q8NF91 8797 aaKnown RBP3.37□□□□□ -1.87
VPS52-217ENST00000478934 KRTAP5-3Q6L8H2 238 aa3.37□□□□□ -1.87
VPS52-217ENST00000478934 LCE3BQ5TA77 95 aa3.31□□□□□ -1.88
VPS52-217ENST00000478934 KRTAP4-9Q9BYQ8 210 aa3.3□□□□□ -1.88
VPS52-217ENST00000478934 KRTAP12-4P60329 112 aa3.28□□□□□ -1.88
VPS52-217ENST00000478934 KRTAP6-1Q3LI64 71 aa3.23□□□□□ -1.89
VPS52-217ENST00000478934 KRTAP9-7A8MTY7 169 aa3.22□□□□□ -1.89
VPS52-217ENST00000478934 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.22□□□□□ -1.89
VPS52-217ENST00000478934 LCE1AQ5T7P2 110 aa3.21□□□□□ -1.9
VPS52-217ENST00000478934 OBSCNQ5VST9 7968 aa3.19□□□□□ -1.9
VPS52-217ENST00000478934 SPRR2EP22531 72 aa3.14□□□□□ -1.91
VPS52-217ENST00000478934 KRTAP5-9P26371 169 aa3.14□□□□□ -1.91
VPS52-217ENST00000478934 SPRR2BP35325 72 aa3.14□□□□□ -1.91
VPS52-217ENST00000478934 SPRR2AP35326 72 aa3.14□□□□□ -1.91
VPS52-217ENST00000478934 MT1AP04731 61 aa3.11□□□□□ -1.91
VPS52-217ENST00000478934 KRTAP5-5Q701N2 237 aaPredicted RBP3.09□□□□□ -1.91
VPS52-217ENST00000478934 KRTAP4-2Q9BYR5 136 aa3.06□□□□□ -1.92
VPS52-217ENST00000478934 KRTAP9-9Q9BYP9 154 aa3.06□□□□□ -1.92
VPS52-217ENST00000478934 KRTAP9-4Q9BYQ2 154 aa3.06□□□□□ -1.92
VPS52-217ENST00000478934 LCE3DQ9BYE3 92 aa3.03□□□□□ -1.92
VPS52-217ENST00000478934 LCE1DQ5T752 114 aa3□□□□□ -1.93
VPS52-217ENST00000478934 SPRR2DP22532 72 aa2.99□□□□□ -1.93
VPS52-217ENST00000478934 LCE3EQ5T5B0 92 aa2.97□□□□□ -1.93
VPS52-217ENST00000478934 PRM1P04553 51 aa2.92□□□□□ -1.94
VPS52-217ENST00000478934 KRTAP4-12Q9BQ66 201 aa2.92□□□□□ -1.94
VPS52-217ENST00000478934 KRTAP6-2Q3LI66 62 aa2.9□□□□□ -1.94
VPS52-217ENST00000478934 KRTAP6-3Q3LI67 103 aa2.9□□□□□ -1.94
VPS52-217ENST00000478934 KRTAP20-1Q3LI63 56 aa2.83□□□□□ -1.96
VPS52-217ENST00000478934 NEBP20929 6669 aa2.8□□□□□ -1.96
VPS52-217ENST00000478934 MT3P25713 68 aa2.79□□□□□ -1.96
VPS52-217ENST00000478934 KRTAP4-11Q9BYQ6 195 aa2.74□□□□□ -1.97
VPS52-217ENST00000478934 MT4P47944 62 aa2.72□□□□□ -1.97
VPS52-217ENST00000478934 KRTAP5-4Q6L8H1 288 aa2.71□□□□□ -1.98
VPS52-217ENST00000478934 GPR98Q8WXG9 6306 aa2.68□□□□□ -1.98
VPS52-217ENST00000478934 HMCN1Q96RW7 5635 aa2.64□□□□□ -1.99
VPS52-217ENST00000478934 KRTAP20-2Q3LI61 65 aa2.59□□□□□ -1.99
VPS52-217ENST00000478934 KRTAP2-2Q9BYT5 123 aa2.58□□□□□ -2
VPS52-217ENST00000478934 LCE4AQ5TA78 99 aa2.53□□□□□ -2
VPS52-217ENST00000478934 KRTAP5-2Q701N4 177 aa2.52□□□□□ -2.01
VPS52-217ENST00000478934 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.47□□□□□ -2.01
VPS52-217ENST00000478934 MUC5ACP98088 5654 aa2.46□□□□□ -2.02
VPS52-217ENST00000478934 LCE1FQ5T754 118 aa2.46□□□□□ -2.02
VPS52-217ENST00000478934 LCE1BQ5T7P3 118 aa2.36□□□□□ -2.03
VPS52-217ENST00000478934 MUC5BQ9HC84 5762 aaPredicted RBP2.26□□□□□ -2.05
VPS52-217ENST00000478934 LCE1EQ5T753 118 aa2.24□□□□□ -2.05
VPS52-217ENST00000478934 KRTAP5-10Q6L8G5 202 aa2.21□□□□□ -2.05
VPS52-217ENST00000478934 KRTAP5-7Q6L8G8 165 aa2.2□□□□□ -2.06
VPS52-217ENST00000478934 KRTAP5-1Q6L8H4 278 aa2.2□□□□□ -2.06
VPS52-217ENST00000478934 AHNAK2Q8IVF2 5795 aa2.18□□□□□ -2.06
VPS52-217ENST00000478934 AHNAKQ09666 5890 aaKnown RBP2.14□□□□□ -2.07
VPS52-217ENST00000478934 LCE1CQ5T751 118 aa2.14□□□□□ -2.07
VPS52-217ENST00000478934 KRTAP5-8O75690 187 aa2.06□□□□□ -2.08
VPS52-217ENST00000478934 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
VPS52-217ENST00000478934 KRTAP4-4Q9BYR3 166 aa2.01□□□□□ -2.09
VPS52-217ENST00000478934 MUC19Q7Z5P9 8384 aa2□□□□□ -2.09
VPS52-217ENST00000478934 KRTAP5-11Q6L8G4 156 aa1.83□□□□□ -2.12
VPS52-217ENST00000478934 KRTAP21-1Q3LI58 79 aa1.76□□□□□ -2.13
VPS52-217ENST00000478934 PHGR1C9JFL3 82 aa1.61□□□□□ -2.15
VPS52-217ENST00000478934 MUC16Q8WXI7 14507 aa1.05□□□□□ -2.24
Retrieved 78 of 20,778 RNA–protein pairs in 84.7 ms