RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 SPATA8Q6RVD6 105 aa6.59□□□□□ -1.35
PDLIM1-202ENST00000477757 KRTAP4-11Q9BYQ6 195 aa6.55□□□□□ -1.36
PDLIM1-202ENST00000477757 MUC5BQ9HC84 5762 aaPredicted RBP6.55□□□□□ -1.36
PDLIM1-202ENST00000477757 TNP1P09430 55 aa6.49□□□□□ -1.37
PDLIM1-202ENST00000477757 KRTAP12-3P60328 96 aa6.45□□□□□ -1.38
PDLIM1-202ENST00000477757 SPANXA2-OT1Q8N9U9 137 aa6.44□□□□□ -1.38
PDLIM1-202ENST00000477757 SEC61GP60059 68 aa6.43□□□□□ -1.38
PDLIM1-202ENST00000477757 SERP1Q9Y6X1 66 aa6.43□□□□□ -1.38
PDLIM1-202ENST00000477757 A0A1B0GU33 70 aa6.41□□□□□ -1.38
PDLIM1-202ENST00000477757 SMIM20Q8N5G0 67 aa6.4□□□□□ -1.38
PDLIM1-202ENST00000477757 PCP4L1A6NKN8 68 aa6.38□□□□□ -1.39
PDLIM1-202ENST00000477757 SNURFQ9Y675 71 aa6.38□□□□□ -1.39
PDLIM1-202ENST00000477757 KRTAP5-8O75690 187 aa6.36□□□□□ -1.39
PDLIM1-202ENST00000477757 KRTAP5-2Q701N4 177 aa6.34□□□□□ -1.39
PDLIM1-202ENST00000477757 COA5Q86WW8 74 aa6.29□□□□□ -1.4
PDLIM1-202ENST00000477757 KRTAP9-9Q9BYP9 154 aa6.28□□□□□ -1.4
PDLIM1-202ENST00000477757 KRTAP9-4Q9BYQ2 154 aa6.28□□□□□ -1.4
PDLIM1-202ENST00000477757 PCP4P48539 62 aa6.25□□□□□ -1.41
PDLIM1-202ENST00000477757 SMIM26A0A096LP01 95 aa6.24□□□□□ -1.41
PDLIM1-202ENST00000477757 J3QR89 54 aa6.24□□□□□ -1.41
PDLIM1-202ENST00000477757 A8MU10 97 aa6.2□□□□□ -1.42
PDLIM1-202ENST00000477757 OBSCNQ5VST9 7968 aa6.16□□□□□ -1.42
PDLIM1-202ENST00000477757 MT1AP04731 61 aa6.06□□□□□ -1.44
PDLIM1-202ENST00000477757 KRTAP6-1Q3LI64 71 aa6.06□□□□□ -1.44
PDLIM1-202ENST00000477757 KRTAP15-1Q3LI76 137 aa6.04□□□□□ -1.44
PDLIM1-202ENST00000477757 A0A1B0GV90 55 aa6□□□□□ -1.45
PDLIM1-202ENST00000477757 A0A1B0GU69 56 aa5.98□□□□□ -1.45
PDLIM1-202ENST00000477757 SERP2Q8N6R1 65 aa5.98□□□□□ -1.45
PDLIM1-202ENST00000477757 KRTAP6-2Q3LI66 62 aa5.93□□□□□ -1.46
PDLIM1-202ENST00000477757 A0A0A0MQY5 61 aa5.88□□□□□ -1.47
PDLIM1-202ENST00000477757 LCE3CQ5T5A8 94 aa5.86□□□□□ -1.47
PDLIM1-202ENST00000477757 KRTAP25-1Q3LHN0 102 aa5.84□□□□□ -1.47
PDLIM1-202ENST00000477757 KRTAP5-1Q6L8H4 278 aa5.8□□□□□ -1.48
PDLIM1-202ENST00000477757 H7BZZ5 65 aa5.65□□□□□ -1.5
PDLIM1-202ENST00000477757 K7ERU9 68 aa5.65□□□□□ -1.5
PDLIM1-202ENST00000477757 PRR15LQ9BU68 103 aa5.62□□□□□ -1.51
PDLIM1-202ENST00000477757 KRTAP9-6A8MVA2 160 aa5.58□□□□□ -1.52
PDLIM1-202ENST00000477757 KRTAP4-2Q9BYR5 136 aa5.57□□□□□ -1.52
PDLIM1-202ENST00000477757 MT3P25713 68 aa5.55□□□□□ -1.52
PDLIM1-202ENST00000477757 COX7CP15954 63 aa5.52□□□□□ -1.53
PDLIM1-202ENST00000477757 UQCR11O14957 56 aa5.38□□□□□ -1.55
PDLIM1-202ENST00000477757 LINC01558Q9Y6Z2 57 aa5.36□□□□□ -1.55
PDLIM1-202ENST00000477757 LCE1EQ5T753 118 aa5.29□□□□□ -1.56
PDLIM1-202ENST00000477757 K7ERS5 55 aa5.22□□□□□ -1.57
PDLIM1-202ENST00000477757 MIR22HGQ0VDD5 57 aa5.18□□□□□ -1.58
PDLIM1-202ENST00000477757 ATP5EP56381 51 aaPredicted RBP5.06□□□□□ -1.6
PDLIM1-202ENST00000477757 RPS28P62857 69 aaKnown RBP5.04□□□□□ -1.6
PDLIM1-202ENST00000477757 ANAPC13Q9BS18 74 aa5.02□□□□□ -1.61
PDLIM1-202ENST00000477757 LCE1BQ5T7P3 118 aa5.01□□□□□ -1.61
PDLIM1-202ENST00000477757 LCE1CQ5T751 118 aa4.91□□□□□ -1.62
PDLIM1-202ENST00000477757 CCDC179H3BU77 68 aa4.89□□□□□ -1.63
PDLIM1-202ENST00000477757 CDC42SE1Q9NRR8 79 aa4.86□□□□□ -1.63
PDLIM1-202ENST00000477757 PRAC1Q96KF2 57 aa4.84□□□□□ -1.63
PDLIM1-202ENST00000477757 Q1T7F1 81 aa4.78□□□□□ -1.64
PDLIM1-202ENST00000477757 TMEM258P61165 79 aa4.76□□□□□ -1.65
PDLIM1-202ENST00000477757 ROMO1P60602 79 aa4.73□□□□□ -1.65
PDLIM1-202ENST00000477757 PSPHP1O15172 72 aa4.67□□□□□ -1.66
PDLIM1-202ENST00000477757 NDUFAF8A1L188 74 aa4.65□□□□□ -1.67
PDLIM1-202ENST00000477757 KRTAP5-11Q6L8G4 156 aa4.64□□□□□ -1.67
PDLIM1-202ENST00000477757 LCE1FQ5T754 118 aa4.56□□□□□ -1.68
PDLIM1-202ENST00000477757 V9GYY9 64 aa4.54□□□□□ -1.68
PDLIM1-202ENST00000477757 A6NED7 52 aa4.46□□□□□ -1.7
PDLIM1-202ENST00000477757 PHGR1C9JFL3 82 aa4.46□□□□□ -1.7
PDLIM1-202ENST00000477757 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.4□□□□□ -1.71
PDLIM1-202ENST00000477757 LCE3DQ9BYE3 92 aa4.07□□□□□ -1.76
PDLIM1-202ENST00000477757 KRTAP21-2Q3LI59 83 aa4.01□□□□□ -1.77
PDLIM1-202ENST00000477757 BRK1Q8WUW1 75 aa3.98□□□□□ -1.77
PDLIM1-202ENST00000477757 MUC19Q7Z5P9 8384 aa3.84□□□□□ -1.8
PDLIM1-202ENST00000477757 PMAIP1Q13794 54 aa3.76□□□□□ -1.81
PDLIM1-202ENST00000477757 PRO0628Q9UI54 55 aa3.76□□□□□ -1.81
PDLIM1-202ENST00000477757 KRTAP4-4Q9BYR3 166 aa3.75□□□□□ -1.81
PDLIM1-202ENST00000477757 LCE3EQ5T5B0 92 aa3.7□□□□□ -1.82
PDLIM1-202ENST00000477757 KTN1-AS1Q86SY8 53 aa3.53□□□□□ -1.84
PDLIM1-202ENST00000477757 KRTAP21-1Q3LI58 79 aa3.41□□□□□ -1.86
PDLIM1-202ENST00000477757 LUZP6Q538Z0 58 aa2.96□□□□□ -1.94
PDLIM1-202ENST00000477757 MUC16Q8WXI7 14507 aa2.67□□□□□ -1.98
PDLIM1-202ENST00000477757 PRM1P04553 51 aa2.37□□□□□ -2.03
PDLIM1-202ENST00000477757 INE1O15225 51 aa2.23□□□□□ -2.05
Retrieved 78 of 20,778 RNA–protein pairs in 13.3 ms