RNA–Protein interactions for RNA: ENST00000472119.1

SCN9A-206, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 2

Gene SCN9A, Length 905 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-206ENST00000472119 KRTAP13-4Q3LI77 160 aa2.83□□□□□ -1.96
SCN9A-206ENST00000472119 A0A1B0GU69 56 aa2.81□□□□□ -1.96
SCN9A-206ENST00000472119 A0A1B0GU33 70 aa2.8□□□□□ -1.96
SCN9A-206ENST00000472119 MT1XP80297 61 aa2.8□□□□□ -1.96
SCN9A-206ENST00000472119 SPATA8Q6RVD6 105 aa2.79□□□□□ -1.96
SCN9A-206ENST00000472119 A0A0D9SG42 100 aa2.78□□□□□ -1.96
SCN9A-206ENST00000472119 PRO2289Q9P1D8 64 aa2.77□□□□□ -1.97
SCN9A-206ENST00000472119 LINC01558Q9Y6Z2 57 aa2.76□□□□□ -1.97
SCN9A-206ENST00000472119 PRR15LQ9BU68 103 aa2.75□□□□□ -1.97
SCN9A-206ENST00000472119 SPINT4Q6UDR6 99 aa2.72□□□□□ -1.97
SCN9A-206ENST00000472119 CAMK2N1Q7Z7J9 78 aa2.72□□□□□ -1.97
SCN9A-206ENST00000472119 SMIM26A0A096LP01 95 aa2.71□□□□□ -1.98
SCN9A-206ENST00000472119 SVIPQ8NHG7 77 aa2.71□□□□□ -1.98
SCN9A-206ENST00000472119 KRTAP12-1P59990 96 aa2.7□□□□□ -1.98
SCN9A-206ENST00000472119 KRTAP6-3Q3LI67 103 aa2.69□□□□□ -1.98
SCN9A-206ENST00000472119 MACF1Q9UPN3 7388 aaKnown RBP2.69□□□□□ -1.98
SCN9A-206ENST00000472119 PSPHP1O15172 72 aa2.67□□□□□ -1.98
SCN9A-206ENST00000472119 Q1T7F1 81 aa2.67□□□□□ -1.98
SCN9A-206ENST00000472119 V9GYY9 64 aa2.67□□□□□ -1.98
SCN9A-206ENST00000472119 UQCR11O14957 56 aa2.66□□□□□ -1.98
SCN9A-206ENST00000472119 RPS28P62857 69 aaKnown RBP2.65□□□□□ -1.99
SCN9A-206ENST00000472119 MIR22HGQ0VDD5 57 aa2.63□□□□□ -1.99
SCN9A-206ENST00000472119 KRTAP8-1Q8IUC2 63 aa2.63□□□□□ -1.99
SCN9A-206ENST00000472119 KMT2DO14686 5537 aa2.61□□□□□ -1.99
SCN9A-206ENST00000472119 SYNE2Q8WXH0 6885 aaKnown RBP2.61□□□□□ -1.99
SCN9A-206ENST00000472119 SPRR2FQ96RM1 72 aa2.6□□□□□ -1.99
SCN9A-206ENST00000472119 A6NED7 52 aa2.58□□□□□ -2
SCN9A-206ENST00000472119 C10orf95Q9H7T3 257 aa2.58□□□□□ -2
SCN9A-206ENST00000472119 K7ERS5 55 aa2.54□□□□□ -2
SCN9A-206ENST00000472119 TNP1P09430 55 aa2.53□□□□□ -2
SCN9A-206ENST00000472119 SPRR2EP22531 72 aa2.52□□□□□ -2.01
SCN9A-206ENST00000472119 SPRR2BP35325 72 aa2.52□□□□□ -2.01
SCN9A-206ENST00000472119 SPRR2AP35326 72 aa2.52□□□□□ -2.01
SCN9A-206ENST00000472119 MUC12Q9UKN1 5478 aa2.52□□□□□ -2.01
SCN9A-206ENST00000472119 KRTAP19-7Q3SYF9 63 aa2.49□□□□□ -2.01
SCN9A-206ENST00000472119 KRTAP19-5Q3LI72 72 aa2.48□□□□□ -2.01
SCN9A-206ENST00000472119 CDC42SE1Q9NRR8 79 aa2.47□□□□□ -2.01
SCN9A-206ENST00000472119 MDN1Q9NU22 5596 aa2.47□□□□□ -2.01
SCN9A-206ENST00000472119 MT1EP04732 61 aa2.46□□□□□ -2.02
SCN9A-206ENST00000472119 NEBP20929 6669 aa2.45□□□□□ -2.02
SCN9A-206ENST00000472119 KRTAP25-1Q3LHN0 102 aa2.45□□□□□ -2.02
SCN9A-206ENST00000472119 SPRR2DP22532 72 aa2.44□□□□□ -2.02
SCN9A-206ENST00000472119 KRTAP20-1Q3LI63 56 aa2.44□□□□□ -2.02
SCN9A-206ENST00000472119 KRTAP2-3P0C7H8 128 aa2.41□□□□□ -2.02
SCN9A-206ENST00000472119 KRTAP19-3Q7Z4W3 81 aa2.41□□□□□ -2.02
SCN9A-206ENST00000472119 KRTAP2-4Q9BYR9 128 aa2.41□□□□□ -2.02
SCN9A-206ENST00000472119 ROMO1P60602 79 aa2.4□□□□□ -2.03
SCN9A-206ENST00000472119 KRTAP12-3P60328 96 aa2.39□□□□□ -2.03
SCN9A-206ENST00000472119 MT1LQ93083 61 aa2.38□□□□□ -2.03
SCN9A-206ENST00000472119 MT1GP13640 62 aa2.37□□□□□ -2.03
SCN9A-206ENST00000472119 BRK1Q8WUW1 75 aa2.37□□□□□ -2.03
SCN9A-206ENST00000472119 MT1MQ8N339 61 aa2.34□□□□□ -2.03
SCN9A-206ENST00000472119 KRTAP2-1Q9BYU5 128 aa2.34□□□□□ -2.03
SCN9A-206ENST00000472119 HMCN1Q96RW7 5635 aa2.32□□□□□ -2.04
SCN9A-206ENST00000472119 PMAIP1Q13794 54 aa2.24□□□□□ -2.05
SCN9A-206ENST00000472119 SPRR5A0A1B0GTR4 108 aa2.23□□□□□ -2.05
SCN9A-206ENST00000472119 DSTQ03001 7570 aaKnown RBP2.23□□□□□ -2.05
SCN9A-206ENST00000472119 PRO0628Q9UI54 55 aa2.16□□□□□ -2.06
SCN9A-206ENST00000472119 KRTAP12-4P60329 112 aa2.15□□□□□ -2.07
SCN9A-206ENST00000472119 MT4P47944 62 aa2.14□□□□□ -2.07
SCN9A-206ENST00000472119 KTN1-AS1Q86SY8 53 aa2.04□□□□□ -2.08
SCN9A-206ENST00000472119 SYNE1Q8NF91 8797 aaKnown RBP2.03□□□□□ -2.08
SCN9A-206ENST00000472119 MT1AP04731 61 aa2.02□□□□□ -2.09
SCN9A-206ENST00000472119 KRTAP6-1Q3LI64 71 aa2.02□□□□□ -2.09
SCN9A-206ENST00000472119 KRTAP20-2Q3LI61 65 aa2.01□□□□□ -2.09
SCN9A-206ENST00000472119 KRTAP6-2Q3LI66 62 aa1.9□□□□□ -2.11
SCN9A-206ENST00000472119 KRTAP5-10Q6L8G5 202 aa1.9□□□□□ -2.11
SCN9A-206ENST00000472119 AHNAK2Q8IVF2 5795 aa1.89□□□□□ -2.11
SCN9A-206ENST00000472119 GPR98Q8WXG9 6306 aa1.87□□□□□ -2.11
SCN9A-206ENST00000472119 LUZP6Q538Z0 58 aa1.76□□□□□ -2.13
SCN9A-206ENST00000472119 MUC5ACP98088 5654 aa1.57□□□□□ -2.16
SCN9A-206ENST00000472119 MUC5BQ9HC84 5762 aaPredicted RBP1.52□□□□□ -2.17
SCN9A-206ENST00000472119 AHNAKQ09666 5890 aaKnown RBP1.48□□□□□ -2.17
SCN9A-206ENST00000472119 MUC16Q8WXI7 14507 aa1.33□□□□□ -2.2
SCN9A-206ENST00000472119 PRM1P04553 51 aa1.25□□□□□ -2.21
SCN9A-206ENST00000472119 INE1O15225 51 aa1.24□□□□□ -2.21
SCN9A-206ENST00000472119 PHGR1C9JFL3 82 aa1.18□□□□□ -2.22
SCN9A-206ENST00000472119 KRTAP21-1Q3LI58 79 aa0.82□□□□□ -2.28
Retrieved 78 of 20,778 RNA–protein pairs in 90.5 ms