RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 KRTAP20-1Q3LI63 56 aa2.03□□□□□ -2.08
SYNE1-220ENST00000471834 KRTAP9-2Q9BYQ4 174 aa2.03□□□□□ -2.08
SYNE1-220ENST00000471834 KRTAP12-4P60329 112 aa2.03□□□□□ -2.09
SYNE1-220ENST00000471834 MT1HP80294 61 aa2.02□□□□□ -2.09
SYNE1-220ENST00000471834 KMT2DO14686 5537 aa2.01□□□□□ -2.09
SYNE1-220ENST00000471834 KRTAP9-9Q9BYP9 154 aa1.99□□□□□ -2.09
SYNE1-220ENST00000471834 KRTAP9-6A8MVA2 160 aa1.99□□□□□ -2.09
SYNE1-220ENST00000471834 KRTAP19-7Q3SYF9 63 aa1.98□□□□□ -2.09
SYNE1-220ENST00000471834 LCE3CQ5T5A8 94 aa1.93□□□□□ -2.1
SYNE1-220ENST00000471834 LCE1FQ5T754 118 aa1.92□□□□□ -2.1
SYNE1-220ENST00000471834 LCE5AQ5TCM9 118 aa1.91□□□□□ -2.1
SYNE1-220ENST00000471834 KRTAP9-1A8MXZ3 250 aaPredicted RBP1.9□□□□□ -2.11
SYNE1-220ENST00000471834 LCE3EQ5T5B0 92 aa1.9□□□□□ -2.11
SYNE1-220ENST00000471834 SYNE1Q8NF91 8797 aaKnown RBP1.9□□□□□ -2.11
SYNE1-220ENST00000471834 LCE3BQ5TA77 95 aa1.87□□□□□ -2.11
SYNE1-220ENST00000471834 MT1EP04732 61 aa1.85□□□□□ -2.11
SYNE1-220ENST00000471834 MT4P47944 62 aa1.85□□□□□ -2.11
SYNE1-220ENST00000471834 MDN1Q9NU22 5596 aa1.85□□□□□ -2.11
SYNE1-220ENST00000471834 MT1LQ93083 61 aa1.84□□□□□ -2.11
SYNE1-220ENST00000471834 MUC12Q9UKN1 5478 aa1.83□□□□□ -2.12
SYNE1-220ENST00000471834 MT1GP13640 62 aa1.82□□□□□ -2.12
SYNE1-220ENST00000471834 FCGBPQ9Y6R7 5405 aaPredicted RBP1.81□□□□□ -2.12
SYNE1-220ENST00000471834 KRTAP4-12Q9BQ66 201 aa1.78□□□□□ -2.12
SYNE1-220ENST00000471834 KRTAP4-8Q9BYQ9 185 aa1.76□□□□□ -2.13
SYNE1-220ENST00000471834 GPR98Q8WXG9 6306 aa1.76□□□□□ -2.13
SYNE1-220ENST00000471834 KRTAP4-8A0A0G2JLE6 195 aa1.75□□□□□ -2.13
SYNE1-220ENST00000471834 KRTAP19-6Q3LI70 58 aa1.75□□□□□ -2.13
SYNE1-220ENST00000471834 MUC5BQ9HC84 5762 aaPredicted RBP1.74□□□□□ -2.13
SYNE1-220ENST00000471834 KRTAP2-2Q9BYT5 123 aa1.73□□□□□ -2.13
SYNE1-220ENST00000471834 MT1AP04731 61 aa1.73□□□□□ -2.13
SYNE1-220ENST00000471834 KRTAP6-3Q3LI67 103 aa1.73□□□□□ -2.13
SYNE1-220ENST00000471834 LCE3DQ9BYE3 92 aa1.73□□□□□ -2.13
SYNE1-220ENST00000471834 SYNE2Q8WXH0 6885 aaKnown RBP1.72□□□□□ -2.13
SYNE1-220ENST00000471834 MT3P25713 68 aa1.71□□□□□ -2.14
SYNE1-220ENST00000471834 LCE1BQ5T7P3 118 aa1.69□□□□□ -2.14
SYNE1-220ENST00000471834 KRTAP4-7Q9BYR0 210 aa1.69□□□□□ -2.14
SYNE1-220ENST00000471834 LOC100996750A0A140TA64 210 aa1.67□□□□□ -2.14
SYNE1-220ENST00000471834 LCE1DQ5T752 114 aa1.67□□□□□ -2.14
SYNE1-220ENST00000471834 MT1MQ8N339 61 aa1.67□□□□□ -2.14
SYNE1-220ENST00000471834 KRTAP4-6Q9BYQ5 205 aa1.66□□□□□ -2.14
SYNE1-220ENST00000471834 KRTAP5-5Q701N2 237 aaPredicted RBP1.65□□□□□ -2.15
SYNE1-220ENST00000471834 KRTAP19-3Q7Z4W3 81 aa1.65□□□□□ -2.15
SYNE1-220ENST00000471834 LCE1CQ5T751 118 aa1.64□□□□□ -2.15
SYNE1-220ENST00000471834 LCE1EQ5T753 118 aa1.64□□□□□ -2.15
SYNE1-220ENST00000471834 LCE1AQ5T7P2 110 aa1.64□□□□□ -2.15
SYNE1-220ENST00000471834 HMCN1Q96RW7 5635 aa1.61□□□□□ -2.15
SYNE1-220ENST00000471834 KRTAP4-3Q9BYR4 195 aa1.61□□□□□ -2.15
SYNE1-220ENST00000471834 PRM1P04553 51 aa1.6□□□□□ -2.15
SYNE1-220ENST00000471834 DSTQ03001 7570 aaKnown RBP1.58□□□□□ -2.16
SYNE1-220ENST00000471834 KRTAP4-9Q9BYQ8 210 aa1.58□□□□□ -2.16
SYNE1-220ENST00000471834 NEBP20929 6669 aa1.57□□□□□ -2.16
SYNE1-220ENST00000471834 OBSCNQ5VST9 7968 aa1.56□□□□□ -2.16
SYNE1-220ENST00000471834 KRTAP5-9P26371 169 aa1.56□□□□□ -2.16
SYNE1-220ENST00000471834 FSIP2Q5CZC0 6907 aa1.56□□□□□ -2.16
SYNE1-220ENST00000471834 MACF1Q9UPN3 7388 aaKnown RBP1.54□□□□□ -2.16
SYNE1-220ENST00000471834 KRTAP4-11Q9BYQ6 195 aa1.5□□□□□ -2.17
SYNE1-220ENST00000471834 KRTAP4-2Q9BYR5 136 aa1.5□□□□□ -2.17
SYNE1-220ENST00000471834 KRTAP6-1Q3LI64 71 aa1.47□□□□□ -2.17
SYNE1-220ENST00000471834 KRTAP5-4Q6L8H1 288 aa1.47□□□□□ -2.17
SYNE1-220ENST00000471834 MUC5ACP98088 5654 aa1.42□□□□□ -2.18
SYNE1-220ENST00000471834 KRTAP5-2Q701N4 177 aa1.4□□□□□ -2.19
SYNE1-220ENST00000471834 KRTAP6-2Q3LI66 62 aa1.39□□□□□ -2.19
SYNE1-220ENST00000471834 KRTAP5-1Q6L8H4 278 aa1.32□□□□□ -2.2
SYNE1-220ENST00000471834 KRTAP5-10Q6L8G5 202 aa1.29□□□□□ -2.2
SYNE1-220ENST00000471834 AHNAK2Q8IVF2 5795 aa1.28□□□□□ -2.2
SYNE1-220ENST00000471834 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.27□□□□□ -2.21
SYNE1-220ENST00000471834 KRTAP5-3Q6L8H2 238 aa1.23□□□□□ -2.21
SYNE1-220ENST00000471834 AHNAKQ09666 5890 aaKnown RBP1.22□□□□□ -2.21
SYNE1-220ENST00000471834 KRTAP20-2Q3LI61 65 aa1.21□□□□□ -2.22
SYNE1-220ENST00000471834 KRTAP5-7Q6L8G8 165 aa1.2□□□□□ -2.22
SYNE1-220ENST00000471834 MUC19Q7Z5P9 8384 aa1.19□□□□□ -2.22
SYNE1-220ENST00000471834 KRTAP5-8O75690 187 aa1.16□□□□□ -2.22
SYNE1-220ENST00000471834 KRTAP5-11Q6L8G4 156 aa1.16□□□□□ -2.22
SYNE1-220ENST00000471834 KRTAP4-4Q9BYR3 166 aa1.14□□□□□ -2.23
SYNE1-220ENST00000471834 KRTAP21-1Q3LI58 79 aa1.14□□□□□ -2.23
SYNE1-220ENST00000471834 PHGR1C9JFL3 82 aa1.13□□□□□ -2.23
SYNE1-220ENST00000471834 KRTAP21-2Q3LI59 83 aa1.09□□□□□ -2.23
SYNE1-220ENST00000471834 MUC16Q8WXI7 14507 aa0.67□□□□□ -2.3
Retrieved 78 of 20,778 RNA–protein pairs in 65.1 ms