RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 LCE3AQ5TA76 89 aa5.62□□□□□ -1.51
SDC3-203ENST00000471567 ROMO1P60602 79 aa5.59□□□□□ -1.51
SDC3-203ENST00000471567 KRTAP19-3Q7Z4W3 81 aa5.59□□□□□ -1.51
SDC3-203ENST00000471567 LCE5AQ5TCM9 118 aa5.57□□□□□ -1.52
SDC3-203ENST00000471567 KRTAP2-2Q9BYT5 123 aa5.56□□□□□ -1.52
SDC3-203ENST00000471567 KRTAP2-1Q9BYU5 128 aa5.56□□□□□ -1.52
SDC3-203ENST00000471567 KRTAP25-1Q3LHN0 102 aa5.55□□□□□ -1.52
SDC3-203ENST00000471567 LCE3BQ5TA77 95 aa5.52□□□□□ -1.53
SDC3-203ENST00000471567 MT1GP13640 62 aa5.5□□□□□ -1.53
SDC3-203ENST00000471567 MT1LQ93083 61 aa5.46□□□□□ -1.54
SDC3-203ENST00000471567 PP632Q6XCG6 107 aa5.45□□□□□ -1.54
SDC3-203ENST00000471567 KRTAP12-3P60328 96 aa5.42□□□□□ -1.54
SDC3-203ENST00000471567 KRTAP23-1A1A580 65 aa5.38□□□□□ -1.55
SDC3-203ENST00000471567 MT1MQ8N339 61 aa5.38□□□□□ -1.55
SDC3-203ENST00000471567 KTN1-AS1Q86SY8 53 aa5.35□□□□□ -1.55
SDC3-203ENST00000471567 DSTQ03001 7570 aaKnown RBP5.31□□□□□ -1.56
SDC3-203ENST00000471567 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
SDC3-203ENST00000471567 KRTAP4-3Q9BYR4 195 aa5.21□□□□□ -1.58
SDC3-203ENST00000471567 PRAC1Q96KF2 57 aa5.19□□□□□ -1.58
SDC3-203ENST00000471567 KRTAP4-7Q9BYR0 210 aa5.17□□□□□ -1.58
SDC3-203ENST00000471567 KRTAP15-1Q3LI76 137 aa5.15□□□□□ -1.59
SDC3-203ENST00000471567 LCE4AQ5TA78 99 aa5.08□□□□□ -1.6
SDC3-203ENST00000471567 SVIPQ8NHG7 77 aa5.05□□□□□ -1.6
SDC3-203ENST00000471567 KRTAP4-9Q9BYQ8 210 aa5.05□□□□□ -1.6
SDC3-203ENST00000471567 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
SDC3-203ENST00000471567 KRTAP5-4Q6L8H1 288 aa5.02□□□□□ -1.61
SDC3-203ENST00000471567 LCE1DQ5T752 114 aa4.98□□□□□ -1.61
SDC3-203ENST00000471567 MT4P47944 62 aa4.94□□□□□ -1.62
SDC3-203ENST00000471567 KRTAP5-5Q701N2 237 aaPredicted RBP4.92□□□□□ -1.62
SDC3-203ENST00000471567 LOC100996750A0A140TA64 210 aa4.88□□□□□ -1.63
SDC3-203ENST00000471567 HMCN1Q96RW7 5635 aa4.86□□□□□ -1.63
SDC3-203ENST00000471567 KRTAP4-6Q9BYQ5 205 aa4.84□□□□□ -1.63
SDC3-203ENST00000471567 KRTAP12-4P60329 112 aa4.76□□□□□ -1.65
SDC3-203ENST00000471567 SPRR5A0A1B0GTR4 108 aa4.74□□□□□ -1.65
SDC3-203ENST00000471567 GPR98Q8WXG9 6306 aa4.71□□□□□ -1.66
SDC3-203ENST00000471567 KRTAP20-2Q3LI61 65 aa4.71□□□□□ -1.66
SDC3-203ENST00000471567 KRTAP9-6A8MVA2 160 aa4.7□□□□□ -1.66
SDC3-203ENST00000471567 SYNE1Q8NF91 8797 aaKnown RBP4.68□□□□□ -1.66
SDC3-203ENST00000471567 MT1AP04731 61 aa4.66□□□□□ -1.66
SDC3-203ENST00000471567 AHNAK2Q8IVF2 5795 aa4.6□□□□□ -1.67
SDC3-203ENST00000471567 KRTAP6-1Q3LI64 71 aa4.59□□□□□ -1.67
SDC3-203ENST00000471567 KRTAP5-3Q6L8H2 238 aa4.57□□□□□ -1.68
SDC3-203ENST00000471567 KRTAP5-10Q6L8G5 202 aa4.52□□□□□ -1.69
SDC3-203ENST00000471567 KRTAP9-4Q9BYQ2 154 aa4.49□□□□□ -1.69
SDC3-203ENST00000471567 KRTAP5-2Q701N4 177 aa4.44□□□□□ -1.7
SDC3-203ENST00000471567 LUZP6Q538Z0 58 aa4.42□□□□□ -1.7
SDC3-203ENST00000471567 KRTAP6-2Q3LI66 62 aa4.35□□□□□ -1.71
SDC3-203ENST00000471567 KRTAP5-7Q6L8G8 165 aa4.33□□□□□ -1.72
SDC3-203ENST00000471567 MT3P25713 68 aa4.26□□□□□ -1.73
SDC3-203ENST00000471567 KRTAP4-11Q9BYQ6 195 aa4.25□□□□□ -1.73
SDC3-203ENST00000471567 KRTAP5-8O75690 187 aa4.1□□□□□ -1.75
SDC3-203ENST00000471567 NDUFAF8A1L188 74 aa4.08□□□□□ -1.76
SDC3-203ENST00000471567 OBSCNQ5VST9 7968 aa4.04□□□□□ -1.76
SDC3-203ENST00000471567 KRTAP5-1Q6L8H4 278 aa3.93□□□□□ -1.78
SDC3-203ENST00000471567 LCE1EQ5T753 118 aa3.88□□□□□ -1.79
SDC3-203ENST00000471567 KRTAP9-9Q9BYP9 154 aa3.86□□□□□ -1.79
SDC3-203ENST00000471567 MUC5ACP98088 5654 aa3.8□□□□□ -1.8
SDC3-203ENST00000471567 MUC5BQ9HC84 5762 aaPredicted RBP3.75□□□□□ -1.81
SDC3-203ENST00000471567 AHNAKQ09666 5890 aaKnown RBP3.72□□□□□ -1.81
SDC3-203ENST00000471567 LCE3DQ9BYE3 92 aa3.67□□□□□ -1.82
SDC3-203ENST00000471567 A0A0A0MQY5 61 aa3.66□□□□□ -1.82
SDC3-203ENST00000471567 KRTAP4-2Q9BYR5 136 aa3.61□□□□□ -1.83
SDC3-203ENST00000471567 LCE1CQ5T751 118 aa3.59□□□□□ -1.83
SDC3-203ENST00000471567 LCE1BQ5T7P3 118 aa3.59□□□□□ -1.83
SDC3-203ENST00000471567 LCE3EQ5T5B0 92 aa3.49□□□□□ -1.85
SDC3-203ENST00000471567 INE1O15225 51 aa3.47□□□□□ -1.85
SDC3-203ENST00000471567 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.3□□□□□ -1.88
SDC3-203ENST00000471567 H3BS24 57 aa3.29□□□□□ -1.88
SDC3-203ENST00000471567 KRTAP5-11Q6L8G4 156 aa3.22□□□□□ -1.89
SDC3-203ENST00000471567 KRTAP4-12Q9BQ66 201 aa3.16□□□□□ -1.9
SDC3-203ENST00000471567 LCE1FQ5T754 118 aa3.1□□□□□ -1.91
SDC3-203ENST00000471567 KRTAP21-2Q3LI59 83 aa3.03□□□□□ -1.92
SDC3-203ENST00000471567 PRM1P04553 51 aa2.87□□□□□ -1.95
SDC3-203ENST00000471567 PHGR1C9JFL3 82 aa2.77□□□□□ -1.97
SDC3-203ENST00000471567 KRTAP4-4Q9BYR3 166 aa2.71□□□□□ -1.98
SDC3-203ENST00000471567 MUC19Q7Z5P9 8384 aa2.48□□□□□ -2.01
SDC3-203ENST00000471567 KRTAP21-1Q3LI58 79 aa2□□□□□ -2.09
SDC3-203ENST00000471567 MUC16Q8WXI7 14507 aa1.83□□□□□ -2.12
Retrieved 78 of 20,778 RNA–protein pairs in 77.1 ms