RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 A6NED7 52 aa4.59□□□□□ -1.67
VPS13D-204ENST00000469054 NEBP20929 6669 aa4.59□□□□□ -1.67
VPS13D-204ENST00000469054 K7ERS5 55 aa4.56□□□□□ -1.68
VPS13D-204ENST00000469054 MDN1Q9NU22 5596 aa4.55□□□□□ -1.68
VPS13D-204ENST00000469054 TNP1P09430 55 aa4.55□□□□□ -1.68
VPS13D-204ENST00000469054 SPRR2EP22531 72 aa4.53□□□□□ -1.68
VPS13D-204ENST00000469054 SPRR2BP35325 72 aa4.53□□□□□ -1.68
VPS13D-204ENST00000469054 SPRR2AP35326 72 aa4.53□□□□□ -1.68
VPS13D-204ENST00000469054 KRTAP19-7Q3SYF9 63 aa4.48□□□□□ -1.69
VPS13D-204ENST00000469054 LCE3AQ5TA76 89 aa4.44□□□□□ -1.7
VPS13D-204ENST00000469054 CDC42SE1Q9NRR8 79 aa4.43□□□□□ -1.7
VPS13D-204ENST00000469054 MT1EP04732 61 aa4.42□□□□□ -1.7
VPS13D-204ENST00000469054 KRTAP19-5Q3LI72 72 aa4.42□□□□□ -1.7
VPS13D-204ENST00000469054 KRTAP25-1Q3LHN0 102 aa4.4□□□□□ -1.71
VPS13D-204ENST00000469054 KRTAP20-1Q3LI63 56 aa4.4□□□□□ -1.71
VPS13D-204ENST00000469054 A0A0A0MQY5 61 aa4.39□□□□□ -1.71
VPS13D-204ENST00000469054 SPRR2DP22532 72 aa4.37□□□□□ -1.71
VPS13D-204ENST00000469054 KRTAP2-3P0C7H8 128 aa4.35□□□□□ -1.71
VPS13D-204ENST00000469054 KRTAP19-3Q7Z4W3 81 aa4.35□□□□□ -1.71
VPS13D-204ENST00000469054 KRTAP2-4Q9BYR9 128 aa4.35□□□□□ -1.71
VPS13D-204ENST00000469054 ROMO1P60602 79 aa4.3□□□□□ -1.72
VPS13D-204ENST00000469054 KRTAP2-2Q9BYT5 123 aa4.3□□□□□ -1.72
VPS13D-204ENST00000469054 MT1GP13640 62 aa4.28□□□□□ -1.72
VPS13D-204ENST00000469054 KRTAP12-3P60328 96 aa4.28□□□□□ -1.72
VPS13D-204ENST00000469054 MT1LQ93083 61 aa4.27□□□□□ -1.73
VPS13D-204ENST00000469054 KRTAP2-1Q9BYU5 128 aa4.24□□□□□ -1.73
VPS13D-204ENST00000469054 PP632Q6XCG6 107 aa4.23□□□□□ -1.73
VPS13D-204ENST00000469054 BRK1Q8WUW1 75 aa4.2□□□□□ -1.74
VPS13D-204ENST00000469054 MT1MQ8N339 61 aa4.19□□□□□ -1.74
VPS13D-204ENST00000469054 KRTAP4-3Q9BYR4 195 aa4.08□□□□□ -1.76
VPS13D-204ENST00000469054 DSTQ03001 7570 aaKnown RBP4.07□□□□□ -1.76
VPS13D-204ENST00000469054 MT3P25713 68 aa4.01□□□□□ -1.77
VPS13D-204ENST00000469054 PRO0628Q9UI54 55 aa3.99□□□□□ -1.77
VPS13D-204ENST00000469054 PMAIP1Q13794 54 aa3.96□□□□□ -1.78
VPS13D-204ENST00000469054 LCE3CQ5T5A8 94 aa3.96□□□□□ -1.78
VPS13D-204ENST00000469054 KRTAP5-11Q6L8G4 156 aa3.92□□□□□ -1.78
VPS13D-204ENST00000469054 KRTAP5-4Q6L8H1 288 aa3.87□□□□□ -1.79
VPS13D-204ENST00000469054 LCE1EQ5T753 118 aa3.83□□□□□ -1.8
VPS13D-204ENST00000469054 KRTAP5-5Q701N2 237 aaPredicted RBP3.83□□□□□ -1.8
VPS13D-204ENST00000469054 MT4P47944 62 aa3.81□□□□□ -1.8
VPS13D-204ENST00000469054 LCE1FQ5T754 118 aa3.8□□□□□ -1.8
VPS13D-204ENST00000469054 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.77□□□□□ -1.81
VPS13D-204ENST00000469054 PRAC1Q96KF2 57 aa3.76□□□□□ -1.81
VPS13D-204ENST00000469054 KRTAP9-6A8MVA2 160 aa3.72□□□□□ -1.81
VPS13D-204ENST00000469054 HMCN1Q96RW7 5635 aa3.7□□□□□ -1.82
VPS13D-204ENST00000469054 KRTAP12-4P60329 112 aa3.68□□□□□ -1.82
VPS13D-204ENST00000469054 SYNE1Q8NF91 8797 aaKnown RBP3.65□□□□□ -1.82
VPS13D-204ENST00000469054 SPRR5A0A1B0GTR4 108 aa3.64□□□□□ -1.83
VPS13D-204ENST00000469054 MT1AP04731 61 aa3.64□□□□□ -1.83
VPS13D-204ENST00000469054 KTN1-AS1Q86SY8 53 aa3.64□□□□□ -1.83
VPS13D-204ENST00000469054 KRTAP20-2Q3LI61 65 aa3.63□□□□□ -1.83
VPS13D-204ENST00000469054 KRTAP6-1Q3LI64 71 aa3.6□□□□□ -1.83
VPS13D-204ENST00000469054 NDUFAF8A1L188 74 aa3.5□□□□□ -1.85
VPS13D-204ENST00000469054 AHNAK2Q8IVF2 5795 aa3.48□□□□□ -1.85
VPS13D-204ENST00000469054 GPR98Q8WXG9 6306 aa3.48□□□□□ -1.85
VPS13D-204ENST00000469054 KRTAP5-10Q6L8G5 202 aa3.43□□□□□ -1.86
VPS13D-204ENST00000469054 KRTAP5-2Q701N4 177 aa3.43□□□□□ -1.86
VPS13D-204ENST00000469054 KRTAP6-2Q3LI66 62 aa3.39□□□□□ -1.87
VPS13D-204ENST00000469054 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
VPS13D-204ENST00000469054 LCE3EQ5T5B0 92 aa3.26□□□□□ -1.89
VPS13D-204ENST00000469054 KRTAP5-7Q6L8G8 165 aa3.26□□□□□ -1.89
VPS13D-204ENST00000469054 KRTAP4-4Q9BYR3 166 aa3.16□□□□□ -1.9
VPS13D-204ENST00000469054 LUZP6Q538Z0 58 aa3.15□□□□□ -1.91
VPS13D-204ENST00000469054 KRTAP5-8O75690 187 aa3.14□□□□□ -1.91
VPS13D-204ENST00000469054 OBSCNQ5VST9 7968 aa3.09□□□□□ -1.91
VPS13D-204ENST00000469054 MUC5ACP98088 5654 aa2.94□□□□□ -1.94
VPS13D-204ENST00000469054 LCE3DQ9BYE3 92 aa2.9□□□□□ -1.95
VPS13D-204ENST00000469054 MUC5BQ9HC84 5762 aaPredicted RBP2.83□□□□□ -1.96
VPS13D-204ENST00000469054 LCE1BQ5T7P3 118 aa2.8□□□□□ -1.96
VPS13D-204ENST00000469054 AHNAKQ09666 5890 aaKnown RBP2.78□□□□□ -1.96
VPS13D-204ENST00000469054 LCE1CQ5T751 118 aa2.77□□□□□ -1.97
VPS13D-204ENST00000469054 INE1O15225 51 aa2.5□□□□□ -2.01
VPS13D-204ENST00000469054 KRTAP21-2Q3LI59 83 aa2.37□□□□□ -2.03
VPS13D-204ENST00000469054 PRM1P04553 51 aa2.21□□□□□ -2.06
VPS13D-204ENST00000469054 PHGR1C9JFL3 82 aa2.14□□□□□ -2.07
VPS13D-204ENST00000469054 MUC19Q7Z5P9 8384 aa2.05□□□□□ -2.08
VPS13D-204ENST00000469054 KRTAP21-1Q3LI58 79 aa1.51□□□□□ -2.17
VPS13D-204ENST00000469054 MUC16Q8WXI7 14507 aa1.44□□□□□ -2.18
Retrieved 78 of 20,778 RNA–protein pairs in 10.1 ms