RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 KRTAP19-3Q7Z4W3 81 aa7.07□□□□□ -1.28
COL7A1-207ENST00000467985 TNP1P09430 55 aa7.05□□□□□ -1.28
COL7A1-207ENST00000467985 DSTQ03001 7570 aaKnown RBP7.04□□□□□ -1.28
COL7A1-207ENST00000467985 KRTAP19-5Q3LI72 72 aa6.97□□□□□ -1.29
COL7A1-207ENST00000467985 MT1GP13640 62 aa6.92□□□□□ -1.3
COL7A1-207ENST00000467985 ROMO1P60602 79 aa6.91□□□□□ -1.3
COL7A1-207ENST00000467985 KRTAP25-1Q3LHN0 102 aa6.9□□□□□ -1.3
COL7A1-207ENST00000467985 PP632Q6XCG6 107 aa6.9□□□□□ -1.3
COL7A1-207ENST00000467985 LCE3AQ5TA76 89 aa6.78□□□□□ -1.32
COL7A1-207ENST00000467985 MT1LQ93083 61 aa6.78□□□□□ -1.32
COL7A1-207ENST00000467985 MT1MQ8N339 61 aa6.77□□□□□ -1.33
COL7A1-207ENST00000467985 KRTAP4-9Q9BYQ8 210 aa6.77□□□□□ -1.33
COL7A1-207ENST00000467985 GPR98Q8WXG9 6306 aa6.76□□□□□ -1.33
COL7A1-207ENST00000467985 PMAIP1Q13794 54 aa6.7□□□□□ -1.34
COL7A1-207ENST00000467985 PRO0628Q9UI54 55 aa6.67□□□□□ -1.34
COL7A1-207ENST00000467985 LCE4AQ5TA78 99 aa6.66□□□□□ -1.34
COL7A1-207ENST00000467985 HMCN1Q96RW7 5635 aa6.64□□□□□ -1.35
COL7A1-207ENST00000467985 LCE1DQ5T752 114 aa6.63□□□□□ -1.35
COL7A1-207ENST00000467985 KRTAP23-1A1A580 65 aa6.62□□□□□ -1.35
COL7A1-207ENST00000467985 KRTAP4-3Q9BYR4 195 aa6.56□□□□□ -1.36
COL7A1-207ENST00000467985 KRTAP12-3P60328 96 aa6.55□□□□□ -1.36
COL7A1-207ENST00000467985 MT4P47944 62 aa6.54□□□□□ -1.36
COL7A1-207ENST00000467985 KRTAP5-4Q6L8H1 288 aa6.5□□□□□ -1.37
COL7A1-207ENST00000467985 KRTAP4-7Q9BYR0 210 aa6.4□□□□□ -1.38
COL7A1-207ENST00000467985 AHNAK2Q8IVF2 5795 aa6.38□□□□□ -1.39
COL7A1-207ENST00000467985 KRTAP4-6Q9BYQ5 205 aa6.34□□□□□ -1.39
COL7A1-207ENST00000467985 KRTAP15-1Q3LI76 137 aa6.29□□□□□ -1.4
COL7A1-207ENST00000467985 PRAC1Q96KF2 57 aa6.29□□□□□ -1.4
COL7A1-207ENST00000467985 KRTAP19-4Q3LI73 84 aa6.26□□□□□ -1.41
COL7A1-207ENST00000467985 KTN1-AS1Q86SY8 53 aa6.26□□□□□ -1.41
COL7A1-207ENST00000467985 KRTAP5-5Q701N2 237 aaPredicted RBP6.22□□□□□ -1.41
COL7A1-207ENST00000467985 KRTAP5-10Q6L8G5 202 aa6.2□□□□□ -1.42
COL7A1-207ENST00000467985 SPRR5A0A1B0GTR4 108 aa6.14□□□□□ -1.43
COL7A1-207ENST00000467985 KRTAP20-2Q3LI61 65 aa6.13□□□□□ -1.43
COL7A1-207ENST00000467985 KRTAP12-4P60329 112 aa6.12□□□□□ -1.43
COL7A1-207ENST00000467985 LOC100996750A0A140TA64 210 aa6.06□□□□□ -1.44
COL7A1-207ENST00000467985 LCE3CQ5T5A8 94 aa6.05□□□□□ -1.44
COL7A1-207ENST00000467985 KRTAP5-3Q6L8H2 238 aa6.04□□□□□ -1.44
COL7A1-207ENST00000467985 SVIPQ8NHG7 77 aa6.03□□□□□ -1.44
COL7A1-207ENST00000467985 KRTAP5-7Q6L8G8 165 aa5.98□□□□□ -1.45
COL7A1-207ENST00000467985 SYNE1Q8NF91 8797 aaKnown RBP5.96□□□□□ -1.45
COL7A1-207ENST00000467985 MT1AP04731 61 aa5.78□□□□□ -1.48
COL7A1-207ENST00000467985 KRTAP6-1Q3LI64 71 aa5.72□□□□□ -1.49
COL7A1-207ENST00000467985 KRTAP5-2Q701N4 177 aa5.69□□□□□ -1.5
COL7A1-207ENST00000467985 KRTAP9-6A8MVA2 160 aa5.64□□□□□ -1.51
COL7A1-207ENST00000467985 KRTAP4-11Q9BYQ6 195 aa5.62□□□□□ -1.51
COL7A1-207ENST00000467985 KRTAP9-4Q9BYQ2 154 aa5.6□□□□□ -1.51
COL7A1-207ENST00000467985 KRTAP6-2Q3LI66 62 aa5.5□□□□□ -1.53
COL7A1-207ENST00000467985 KRTAP5-8O75690 187 aa5.42□□□□□ -1.54
COL7A1-207ENST00000467985 OBSCNQ5VST9 7968 aa5.35□□□□□ -1.55
COL7A1-207ENST00000467985 MT3P25713 68 aa5.31□□□□□ -1.56
COL7A1-207ENST00000467985 LUZP6Q538Z0 58 aa5.31□□□□□ -1.56
COL7A1-207ENST00000467985 MUC5BQ9HC84 5762 aaPredicted RBP5.31□□□□□ -1.56
COL7A1-207ENST00000467985 AHNAKQ09666 5890 aaKnown RBP5.3□□□□□ -1.56
COL7A1-207ENST00000467985 MUC5ACP98088 5654 aa5.28□□□□□ -1.56
COL7A1-207ENST00000467985 KRTAP9-9Q9BYP9 154 aa5.19□□□□□ -1.58
COL7A1-207ENST00000467985 KRTAP5-1Q6L8H4 278 aa5.1□□□□□ -1.59
COL7A1-207ENST00000467985 LCE1EQ5T753 118 aa4.91□□□□□ -1.62
COL7A1-207ENST00000467985 NDUFAF8A1L188 74 aa4.79□□□□□ -1.64
COL7A1-207ENST00000467985 KRTAP4-2Q9BYR5 136 aa4.59□□□□□ -1.67
COL7A1-207ENST00000467985 LCE1BQ5T7P3 118 aa4.58□□□□□ -1.68
COL7A1-207ENST00000467985 LCE1CQ5T751 118 aa4.55□□□□□ -1.68
COL7A1-207ENST00000467985 LCE3DQ9BYE3 92 aa4.49□□□□□ -1.69
COL7A1-207ENST00000467985 LCE3EQ5T5B0 92 aa4.32□□□□□ -1.72
COL7A1-207ENST00000467985 KRTAP4-12Q9BQ66 201 aa4.16□□□□□ -1.74
COL7A1-207ENST00000467985 A0A0A0MQY5 61 aa4.15□□□□□ -1.75
COL7A1-207ENST00000467985 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.13□□□□□ -1.75
COL7A1-207ENST00000467985 KRTAP5-11Q6L8G4 156 aa4.12□□□□□ -1.75
COL7A1-207ENST00000467985 LCE1FQ5T754 118 aa4.05□□□□□ -1.76
COL7A1-207ENST00000467985 INE1O15225 51 aa3.94□□□□□ -1.78
COL7A1-207ENST00000467985 KRTAP21-2Q3LI59 83 aa3.78□□□□□ -1.8
COL7A1-207ENST00000467985 H3BS24 57 aa3.73□□□□□ -1.81
COL7A1-207ENST00000467985 PHGR1C9JFL3 82 aa3.62□□□□□ -1.83
COL7A1-207ENST00000467985 PRM1P04553 51 aa3.57□□□□□ -1.84
COL7A1-207ENST00000467985 KRTAP4-4Q9BYR3 166 aa3.44□□□□□ -1.86
COL7A1-207ENST00000467985 MUC19Q7Z5P9 8384 aa3.29□□□□□ -1.88
COL7A1-207ENST00000467985 KRTAP21-1Q3LI58 79 aa2.78□□□□□ -1.96
COL7A1-207ENST00000467985 MUC16Q8WXI7 14507 aa2.33□□□□□ -2.04
Retrieved 78 of 20,778 RNA–protein pairs in 12.6 ms