RNA–Protein interactions for RNA: ENST00000466410.5

LIMS2-212, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-212ENST00000466410 KRTAP2-4Q9BYR9 128 aa6.59□□□□□ -1.36
LIMS2-212ENST00000466410 KRTAP2-1Q9BYU5 128 aa6.59□□□□□ -1.36
LIMS2-212ENST00000466410 FCGBPQ9Y6R7 5405 aaPredicted RBP6.58□□□□□ -1.36
LIMS2-212ENST00000466410 KRTAP4-3Q9BYR4 195 aa6.39□□□□□ -1.39
LIMS2-212ENST00000466410 MUC12Q9UKN1 5478 aa6.35□□□□□ -1.39
LIMS2-212ENST00000466410 LOC100996750A0A140TA64 210 aa6.35□□□□□ -1.39
LIMS2-212ENST00000466410 MT1GP13640 62 aa6.28□□□□□ -1.4
LIMS2-212ENST00000466410 MT1MQ8N339 61 aa6.27□□□□□ -1.41
LIMS2-212ENST00000466410 KRTAP19-3Q7Z4W3 81 aa6.27□□□□□ -1.41
LIMS2-212ENST00000466410 KRTAP9-2Q9BYQ4 174 aa6.24□□□□□ -1.41
LIMS2-212ENST00000466410 MACF1Q9UPN3 7388 aaKnown RBP6.22□□□□□ -1.41
LIMS2-212ENST00000466410 CRCT1Q9UGL9 99 aa6.15□□□□□ -1.42
LIMS2-212ENST00000466410 SPRR2FQ96RM1 72 aa6.13□□□□□ -1.43
LIMS2-212ENST00000466410 LCE5AQ5TCM9 118 aa6.06□□□□□ -1.44
LIMS2-212ENST00000466410 SYNE2Q8WXH0 6885 aaKnown RBP6.05□□□□□ -1.44
LIMS2-212ENST00000466410 DSTQ03001 7570 aaKnown RBP6.04□□□□□ -1.44
LIMS2-212ENST00000466410 MDN1Q9NU22 5596 aa5.93□□□□□ -1.46
LIMS2-212ENST00000466410 KRTAP5-9P26371 169 aa5.84□□□□□ -1.47
LIMS2-212ENST00000466410 KRTAP12-4P60329 112 aa5.83□□□□□ -1.48
LIMS2-212ENST00000466410 LCE3BQ5TA77 95 aa5.81□□□□□ -1.48
LIMS2-212ENST00000466410 LCE1AQ5T7P2 110 aa5.79□□□□□ -1.48
LIMS2-212ENST00000466410 KRTAP4-9Q9BYQ8 210 aa5.71□□□□□ -1.49
LIMS2-212ENST00000466410 KRTAP6-1Q3LI64 71 aa5.71□□□□□ -1.5
LIMS2-212ENST00000466410 SPRR2EP22531 72 aa5.68□□□□□ -1.5
LIMS2-212ENST00000466410 SPRR2BP35325 72 aa5.68□□□□□ -1.5
LIMS2-212ENST00000466410 SPRR2AP35326 72 aa5.68□□□□□ -1.5
LIMS2-212ENST00000466410 MT1AP04731 61 aa5.62□□□□□ -1.51
LIMS2-212ENST00000466410 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.61□□□□□ -1.51
LIMS2-212ENST00000466410 SYNE1Q8NF91 8797 aaKnown RBP5.6□□□□□ -1.51
LIMS2-212ENST00000466410 KRTAP5-5Q701N2 237 aaPredicted RBP5.55□□□□□ -1.52
LIMS2-212ENST00000466410 KRTAP9-6A0A140TA67 174 aa5.53□□□□□ -1.52
LIMS2-212ENST00000466410 KRTAP6-3Q3LI67 103 aa5.51□□□□□ -1.53
LIMS2-212ENST00000466410 LCE3DQ9BYE3 92 aa5.46□□□□□ -1.54
LIMS2-212ENST00000466410 SPRR2DP22532 72 aa5.44□□□□□ -1.54
LIMS2-212ENST00000466410 LCE3EQ5T5B0 92 aa5.38□□□□□ -1.55
LIMS2-212ENST00000466410 KRTAP9-4Q9BYQ2 154 aa5.3□□□□□ -1.56
LIMS2-212ENST00000466410 KRTAP9-7A8MTY7 169 aa5.25□□□□□ -1.57
LIMS2-212ENST00000466410 NEBP20929 6669 aa5.18□□□□□ -1.58
LIMS2-212ENST00000466410 PRM1P04553 51 aa5.16□□□□□ -1.58
LIMS2-212ENST00000466410 KRTAP6-2Q3LI66 62 aa5.12□□□□□ -1.59
LIMS2-212ENST00000466410 OBSCNQ5VST9 7968 aa5.05□□□□□ -1.6
LIMS2-212ENST00000466410 MT3P25713 68 aa5.05□□□□□ -1.6
LIMS2-212ENST00000466410 KRTAP5-4Q6L8H1 288 aa4.98□□□□□ -1.61
LIMS2-212ENST00000466410 KRTAP4-6Q9BYQ5 205 aa4.85□□□□□ -1.63
LIMS2-212ENST00000466410 MT4P47944 62 aa4.81□□□□□ -1.64
LIMS2-212ENST00000466410 LCE4AQ5TA78 99 aa4.71□□□□□ -1.65
LIMS2-212ENST00000466410 KRTAP20-2Q3LI61 65 aa4.68□□□□□ -1.66
LIMS2-212ENST00000466410 HMCN1Q96RW7 5635 aa4.67□□□□□ -1.66
LIMS2-212ENST00000466410 KRTAP2-2Q9BYT5 123 aa4.66□□□□□ -1.66
LIMS2-212ENST00000466410 LCE1DQ5T752 114 aa4.62□□□□□ -1.67
LIMS2-212ENST00000466410 KRTAP5-2Q701N4 177 aa4.59□□□□□ -1.68
LIMS2-212ENST00000466410 KRTAP20-1Q3LI63 56 aa4.54□□□□□ -1.68
LIMS2-212ENST00000466410 KRTAP5-3Q6L8H2 238 aa4.49□□□□□ -1.69
LIMS2-212ENST00000466410 MUC5ACP98088 5654 aa4.29□□□□□ -1.72
LIMS2-212ENST00000466410 LCE1EQ5T753 118 aa4.11□□□□□ -1.75
LIMS2-212ENST00000466410 LCE1BQ5T7P3 118 aa4.1□□□□□ -1.75
LIMS2-212ENST00000466410 KRTAP5-10Q6L8G5 202 aa4□□□□□ -1.77
LIMS2-212ENST00000466410 KRTAP5-1Q6L8H4 278 aa3.96□□□□□ -1.78
LIMS2-212ENST00000466410 KRTAP4-11Q9BYQ6 195 aa3.96□□□□□ -1.78
LIMS2-212ENST00000466410 KRTAP4-2Q9BYR5 136 aa3.94□□□□□ -1.78
LIMS2-212ENST00000466410 LCE1CQ5T751 118 aa3.89□□□□□ -1.79
LIMS2-212ENST00000466410 AHNAK2Q8IVF2 5795 aa3.89□□□□□ -1.79
LIMS2-212ENST00000466410 KRTAP5-8O75690 187 aa3.81□□□□□ -1.8
LIMS2-212ENST00000466410 KRTAP21-2Q3LI59 83 aa3.68□□□□□ -1.82
LIMS2-212ENST00000466410 KRTAP5-7Q6L8G8 165 aa3.67□□□□□ -1.82
LIMS2-212ENST00000466410 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.67□□□□□ -1.82
LIMS2-212ENST00000466410 LCE1FQ5T754 118 aa3.56□□□□□ -1.84
LIMS2-212ENST00000466410 MUC5BQ9HC84 5762 aaPredicted RBP3.42□□□□□ -1.86
LIMS2-212ENST00000466410 KRTAP4-4Q9BYR3 166 aa3.39□□□□□ -1.87
LIMS2-212ENST00000466410 KRTAP5-11Q6L8G4 156 aa3.35□□□□□ -1.87
LIMS2-212ENST00000466410 GPR98Q8WXG9 6306 aa3.34□□□□□ -1.87
LIMS2-212ENST00000466410 KRTAP9-9Q9BYP9 154 aa3.27□□□□□ -1.89
LIMS2-212ENST00000466410 KRTAP4-12Q9BQ66 201 aa3.26□□□□□ -1.89
LIMS2-212ENST00000466410 KRTAP21-1Q3LI58 79 aa3.23□□□□□ -1.89
LIMS2-212ENST00000466410 MUC19Q7Z5P9 8384 aa3.19□□□□□ -1.9
LIMS2-212ENST00000466410 PHGR1C9JFL3 82 aa2.9□□□□□ -1.94
LIMS2-212ENST00000466410 AHNAKQ09666 5890 aaKnown RBP2.72□□□□□ -1.97
LIMS2-212ENST00000466410 MUC16Q8WXI7 14507 aa1.91□□□□□ -2.1
Retrieved 78 of 20,778 RNA–protein pairs in 82.1 ms