RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 K7ERS5 55 aa2.36□□□□□ -2.03
VPS41-211ENST00000466017 MT1BP07438 61 aa2.36□□□□□ -2.03
VPS41-211ENST00000466017 A0A0D9SG42 100 aa2.35□□□□□ -2.03
VPS41-211ENST00000466017 BRK1Q8WUW1 75 aa2.35□□□□□ -2.03
VPS41-211ENST00000466017 PLAC4Q8WY50 150 aa2.35□□□□□ -2.03
VPS41-211ENST00000466017 LINC01554Q52M75 96 aa2.34□□□□□ -2.03
VPS41-211ENST00000466017 SPINT4Q6UDR6 99 aa2.33□□□□□ -2.04
VPS41-211ENST00000466017 LCE3DQ9BYE3 92 aa2.33□□□□□ -2.04
VPS41-211ENST00000466017 PRO0628Q9UI54 55 aa2.33□□□□□ -2.04
VPS41-211ENST00000466017 KRTAP19-6Q3LI70 58 aa2.28□□□□□ -2.04
VPS41-211ENST00000466017 CAMK2N1Q7Z7J9 78 aa2.28□□□□□ -2.04
VPS41-211ENST00000466017 USH2AO75445 5202 aa2.27□□□□□ -2.05
VPS41-211ENST00000466017 MT1XP80297 61 aa2.26□□□□□ -2.05
VPS41-211ENST00000466017 PRO2289Q9P1D8 64 aa2.26□□□□□ -2.05
VPS41-211ENST00000466017 PMAIP1Q13794 54 aa2.25□□□□□ -2.05
VPS41-211ENST00000466017 C10orf95Q9H7T3 257 aa2.25□□□□□ -2.05
VPS41-211ENST00000466017 ROMO1P60602 79 aa2.24□□□□□ -2.05
VPS41-211ENST00000466017 TNP1P09430 55 aa2.21□□□□□ -2.06
VPS41-211ENST00000466017 KRTAP25-1Q3LHN0 102 aa2.21□□□□□ -2.06
VPS41-211ENST00000466017 LCE1CQ5T751 118 aa2.2□□□□□ -2.06
VPS41-211ENST00000466017 LCE1BQ5T7P3 118 aa2.2□□□□□ -2.06
VPS41-211ENST00000466017 SSPOA2VEC9 5147 aa2.2□□□□□ -2.06
VPS41-211ENST00000466017 CRCT1Q9UGL9 99 aa2.19□□□□□ -2.06
VPS41-211ENST00000466017 PP632Q6XCG6 107 aa2.15□□□□□ -2.07
VPS41-211ENST00000466017 KTN1-AS1Q86SY8 53 aa2.15□□□□□ -2.07
VPS41-211ENST00000466017 FCGBPQ9Y6R7 5405 aaPredicted RBP2.12□□□□□ -2.07
VPS41-211ENST00000466017 FSIP2Q5CZC0 6907 aa2.11□□□□□ -2.07
VPS41-211ENST00000466017 KRTAP8-1Q8IUC2 63 aa2.1□□□□□ -2.07
VPS41-211ENST00000466017 KRTAP5-8O75690 187 aa2.07□□□□□ -2.08
VPS41-211ENST00000466017 KRTAP19-7Q3SYF9 63 aa2.03□□□□□ -2.08
VPS41-211ENST00000466017 KRTAP12-3P60328 96 aa2.02□□□□□ -2.09
VPS41-211ENST00000466017 KRTAP6-3Q3LI67 103 aa2.01□□□□□ -2.09
VPS41-211ENST00000466017 KRTAP19-5Q3LI72 72 aa2.01□□□□□ -2.09
VPS41-211ENST00000466017 MACF1Q9UPN3 7388 aaKnown RBP2□□□□□ -2.09
VPS41-211ENST00000466017 KMT2DO14686 5537 aa2□□□□□ -2.09
VPS41-211ENST00000466017 MT1EP04732 61 aa1.99□□□□□ -2.09
VPS41-211ENST00000466017 SPRR5A0A1B0GTR4 108 aa1.95□□□□□ -2.1
VPS41-211ENST00000466017 SPRR2FQ96RM1 72 aa1.95□□□□□ -2.1
VPS41-211ENST00000466017 MT1GP13640 62 aa1.94□□□□□ -2.1
VPS41-211ENST00000466017 KRTAP19-3Q7Z4W3 81 aa1.94□□□□□ -2.1
VPS41-211ENST00000466017 MT1LQ93083 61 aa1.94□□□□□ -2.1
VPS41-211ENST00000466017 SYNE2Q8WXH0 6885 aaKnown RBP1.91□□□□□ -2.1
VPS41-211ENST00000466017 MUC19Q7Z5P9 8384 aa1.9□□□□□ -2.1
VPS41-211ENST00000466017 KRTAP5-7Q6L8G8 165 aa1.88□□□□□ -2.11
VPS41-211ENST00000466017 MUC12Q9UKN1 5478 aa1.87□□□□□ -2.11
VPS41-211ENST00000466017 SPRR2EP22531 72 aa1.87□□□□□ -2.11
VPS41-211ENST00000466017 SPRR2BP35325 72 aa1.87□□□□□ -2.11
VPS41-211ENST00000466017 SPRR2AP35326 72 aa1.87□□□□□ -2.11
VPS41-211ENST00000466017 MT1MQ8N339 61 aa1.87□□□□□ -2.11
VPS41-211ENST00000466017 MDN1Q9NU22 5596 aa1.82□□□□□ -2.12
VPS41-211ENST00000466017 NEBP20929 6669 aa1.81□□□□□ -2.12
VPS41-211ENST00000466017 SPRR2DP22532 72 aa1.8□□□□□ -2.12
VPS41-211ENST00000466017 KRTAP2-3P0C7H8 128 aa1.77□□□□□ -2.13
VPS41-211ENST00000466017 KRTAP2-4Q9BYR9 128 aa1.77□□□□□ -2.13
VPS41-211ENST00000466017 LUZP6Q538Z0 58 aa1.75□□□□□ -2.13
VPS41-211ENST00000466017 KRTAP2-1Q9BYU5 128 aa1.73□□□□□ -2.13
VPS41-211ENST00000466017 DSTQ03001 7570 aaKnown RBP1.73□□□□□ -2.13
VPS41-211ENST00000466017 KRTAP20-1Q3LI63 56 aa1.7□□□□□ -2.14
VPS41-211ENST00000466017 MT1AP04731 61 aa1.67□□□□□ -2.14
VPS41-211ENST00000466017 KRTAP21-2Q3LI59 83 aa1.62□□□□□ -2.15
VPS41-211ENST00000466017 KRTAP6-1Q3LI64 71 aa1.62□□□□□ -2.15
VPS41-211ENST00000466017 KRTAP12-4P60329 112 aa1.61□□□□□ -2.15
VPS41-211ENST00000466017 SYNE1Q8NF91 8797 aaKnown RBP1.6□□□□□ -2.15
VPS41-211ENST00000466017 KRTAP20-2Q3LI61 65 aa1.54□□□□□ -2.16
VPS41-211ENST00000466017 MT4P47944 62 aa1.53□□□□□ -2.16
VPS41-211ENST00000466017 KRTAP6-2Q3LI66 62 aa1.49□□□□□ -2.17
VPS41-211ENST00000466017 HMCN1Q96RW7 5635 aa1.46□□□□□ -2.18
VPS41-211ENST00000466017 INE1O15225 51 aa1.42□□□□□ -2.18
VPS41-211ENST00000466017 KRTAP5-10Q6L8G5 202 aa1.34□□□□□ -2.19
VPS41-211ENST00000466017 AHNAK2Q8IVF2 5795 aa1.34□□□□□ -2.2
VPS41-211ENST00000466017 GPR98Q8WXG9 6306 aa1.31□□□□□ -2.2
VPS41-211ENST00000466017 MUC5ACP98088 5654 aa1.22□□□□□ -2.21
VPS41-211ENST00000466017 PRM1P04553 51 aa1.13□□□□□ -2.23
VPS41-211ENST00000466017 MUC5BQ9HC84 5762 aaPredicted RBP1.06□□□□□ -2.24
VPS41-211ENST00000466017 AHNAKQ09666 5890 aaKnown RBP1.02□□□□□ -2.25
VPS41-211ENST00000466017 PHGR1C9JFL3 82 aa0.95□□□□□ -2.26
VPS41-211ENST00000466017 MUC16Q8WXI7 14507 aa0.88□□□□□ -2.27
VPS41-211ENST00000466017 KRTAP21-1Q3LI58 79 aa0.73□□□□□ -2.29
Retrieved 78 of 20,778 RNA–protein pairs in 71.5 ms